mRNA_E-fasciculatus_F_contig14987.3532.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14987.3532.1
Unique NamemRNA_E-fasciculatus_F_contig14987.3532.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14987.3532.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.000e-17
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 2 
Query:    2 PMGEEVDDETTLDAEEALARGAGEAGPXXXXXXXXXXXXXXXXXXLARLKAEAELPIEELMRLYAAQDGG 211
            PMGE+VDDETTLDAE+ALARGAGEA       XXXXXXXXXXX  LARLKAEAELPIEELMRLYAAQDGG
Sbjct:  556 PMGEDVDDETTLDAEDALARGAGEAVSGGSSGXXXXXXXXXXXAELARLKAEAELPIEELMRLYAAQDGG 625
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BLAST of mRNA_E-fasciculatus_F_contig14987.3532.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.040e-16
Identity = 54/70 (77.14%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:    2 PMGEEVDDETTLDAEEALARGAGEAGPXXXXXXXXXXXXXXXXXXLARLKAEAELPIEELMRLYAAQDGG 211
            P+GE+VDDETTLDAEEALARGA +AGP    XXXXXXX       LARLKAEAELPIEELMRLYAAQD G
Sbjct:  828 PVGEDVDDETTLDAEEALARGAEQAGPGDSSXXXXXXXAATEAAELARLKAEAELPIEELMRLYAAQDVG 897
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14987.3532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTP0_ECTSI3.000e-1784.29Similar to E1a binding protein P400 (Partial) (Fra... [more]
A0A6H5KKD6_9PHAE1.040e-1677.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14987contigE-fasciculatus_F_contig14987:1392..2346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue7.7e-14
Seed eggNOG ortholog2880.D7FTP0
KEGG koko:K11320
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0391@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size307
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14987.3532.1prot_E-fasciculatus_F_contig14987.3532.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14987 1392..2342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927977.052827-CDS-E-fasciculatus_F_contig14987:1391..16521622927977.052827-CDS-E-fasciculatus_F_contig14987:1391..1652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14987 1392..1652 -
1695995775.287341-CDS-E-fasciculatus_F_contig14987:1391..16521695995775.287341-CDS-E-fasciculatus_F_contig14987:1391..1652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14987 1392..1652 -
1622927977.0673437-CDS-E-fasciculatus_F_contig14987:2300..23421622927977.0673437-CDS-E-fasciculatus_F_contig14987:2300..2342Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14987 2301..2342 -
1695995775.2995996-CDS-E-fasciculatus_F_contig14987:2300..23421695995775.2995996-CDS-E-fasciculatus_F_contig14987:2300..2342Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14987 2301..2342 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927977.0805776-UTR-E-fasciculatus_F_contig14987:2342..23461622927977.0805776-UTR-E-fasciculatus_F_contig14987:2342..2346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14987 2343..2346 -
1695995775.309024-UTR-E-fasciculatus_F_contig14987:2342..23461695995775.309024-UTR-E-fasciculatus_F_contig14987:2342..2346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14987 2343..2346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14987.3532.1

>prot_E-fasciculatus_F_contig14987.3532.1 ID=prot_E-fasciculatus_F_contig14987.3532.1|Name=mRNA_E-fasciculatus_F_contig14987.3532.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MGEEVDDETTLDAEEALARGAGEAGPGGSSGAGPSSAAAAEAAELARLKA
EAELPIEELMRLYAAQDGGGGGGGGDTDFDDDDDVDAFSGGDVSSMEEEE
E
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mRNA from alignment at E-fasciculatus_F_contig14987:1392..2346-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14987.3532.1 ID=mRNA_E-fasciculatus_F_contig14987.3532.1|Name=mRNA_E-fasciculatus_F_contig14987.3532.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=955bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14987:1392..2346- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGATGGGAGAGGAGGTGGACGACGAAACCACGCTTGATGCCGAGGTGC
CTGACTTGTTCTGACTAGTAATAATCGACAGCAATGATGTATCTACGGCC
TTCCTGCGTGCCTGTCTGCCTCCCTCAAGAGTGCGTCCAGAACATCATGC
ATGTGCGAAGATAGGGAAGCGACTTGGGTCGGGAAAATACACGCGGCCCA
CGCCTTTTTACCATTGATTCGAGACTTTTGGGAAATAGTTCGTCATCCTT
CGTTTCGATTTGGAAGTGATTTTTCTGGTGCACTGTGAAGGTGTAGTTTC
GAGCAATGTTTGATCTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAC
GCCATCGGTGTGGTGTGTCGACTGACAATCTTCGTTTGTGCACACTCTTC
GGACGGGAACACTAGTACATTCGATTCCTTCGTGCAACGATTGTGTATAG
GTCTTCTCTTGCAACGCCCTCCCTCAGCCGCCGCTGCTGGCTCCAATTGT
CCGTTCGTATCCAAAACCTTTTCCGTGGGCTCAAATCCATTCAGTTCCTT
CATATTTTCGTGGAGATTCGGTTGTATGATCTCTGTCGTATCCACCCGCT
CAAACGTAGGTTCCCCCCCCCCACACACACACAGTGATGACAAAAAAAAA
GAGAAACACACATACACACACACACACACGTCACGATTTGGCAGGAGGCG
CTAGCAAGAGGGGCCGGAGAAGCCGGTCCCGGTGGCAGCAGCGGTGCCGG
GCCCTCGTCCGCTGCTGCCGCAGAAGCGGCGGAGCTGGCTCGCCTCAAGG
CCGAAGCAGAGCTGCCGATCGAAGAGCTGATGCGCTTGTACGCCGCGCAG
GACGGAGGAGGAGGAGGAGGAGGAGGAGATACTGACTTCGACGACGACGA
CGACGTCGACGCCTTTAGCGGCGGTGATGTCTCCTCCATGGAAGAAGAAG
AGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14987:1392..2346-

>mRNA_E-fasciculatus_F_contig14987.3532.1 ID=mRNA_E-fasciculatus_F_contig14987.3532.1|Name=mRNA_E-fasciculatus_F_contig14987.3532.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14987:1392..2346- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGAGAGGAGGTGGACGACGAAACCACGCTTGATGCCGAGATGGGAGA
GGAGGTGGACGACGAAACCACGCTTGATGCCGAGGAGGCGCTAGCAAGAG
GGGCCGGAGAAGCCGGTCCCGGTGGCAGCAGCGGTGCCGGGCCCTCGTCC
GCTGCTGCCGCAGAAGCGGCGGAGCTGGCTCGCCTCAAGGCCGAAGCAGA
GCTGCCGATCGAAGAGCTGATGCGCTTGTACGCCGCGCAGGACGGAGGAG
GAGGAGGAGGAGGAGGAGATACTGACTTCGACGACGACGACGACGTCGAC
GCCTTTAGCGGCGGTGATGTCTCCTCCATGGAAGAAGAAGAGGAGGAGGC
GCTAGCAAGAGGGGCCGGAGAAGCCGGTCCCGGTGGCAGCAGCGGTGCCG
GGCCCTCGTCCGCTGCTGCCGCAGAAGCGGCGGAGCTGGCTCGCCTCAAG
GCCGAAGCAGAGCTGCCGATCGAAGAGCTGATGCGCTTGTACGCCGCGCA
GGACGGAGGAGGAGGAGGAGGAGGAGGAGATACTGACTTCGACGACGACG
ACGACGTCGACGCCTTTAGCGGCGGTGATGTCTCCTCCATGGAAGAAGAA
GAGGAG
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