mRNA_E-fasciculatus_F_contig14987.3531.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14987.3531.1
Unique NamemRNA_E-fasciculatus_F_contig14987.3531.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14987.3531.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.840e-37
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = 1 
Query:   10 EQEDAEFEFREEVDDEATLDAEAALAGDGDDVADELAALRAEADLPIEELRRLAAAGHGGGEEEEAFSSDGFDSELDLEGEADDAYRGG 276
            EQEDAEFEFREEVDDE TL+AEAALAGDGDDVADELAALRAEADLPIEELRRLAAAGH G EEEE FSSDGFDSELDLEGE DDAYRGG
Sbjct: 1036 EQEDAEFEFREEVDDETTLEAEAALAGDGDDVADELAALRAEADLPIEELRRLAAAGHDG-EEEEPFSSDGFDSELDLEGEDDDAYRGG 1123
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BLAST of mRNA_E-fasciculatus_F_contig14987.3531.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 8.650e-36
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    7 DEQEDAEFEFREEVDDEATLDAEAALAGDGDDVADELAALRAEADLPIEELRRLAAAGHGGGEEEEAFSSDGFDSELDLEGEADDAYRGG 276
            DE+EDAEFEFREE DDE TLDAEAALAGDGDDVADELAALRAEADLPIEELRRLAAAGH G EE+E FSSDGFDSELDLEGE DDAYR G
Sbjct:  748 DEKEDAEFEFREEADDETTLDAEAALAGDGDDVADELAALRAEADLPIEELRRLAAAGHDG-EEDEPFSSDGFDSELDLEGEDDDAYRRG 836
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14987.3531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKD6_9PHAE2.840e-3793.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTP0_ECTSI8.650e-3690.00Similar to E1a binding protein P400 (Partial) (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14987contigE-fasciculatus_F_contig14987:159..1079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.8e-31
Seed eggNOG ortholog2880.D7FTP0
KEGG koko:K11320
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0391@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927976.9992602-CDS-E-fasciculatus_F_contig14987:159..3601622927976.9992602-CDS-E-fasciculatus_F_contig14987:159..360Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14987 160..360 -
1695995775.2662742-CDS-E-fasciculatus_F_contig14987:159..3601695995775.2662742-CDS-E-fasciculatus_F_contig14987:159..360Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14987 160..360 -
1622927977.0162997-CDS-E-fasciculatus_F_contig14987:1004..10791622927977.0162997-CDS-E-fasciculatus_F_contig14987:1004..1079Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14987 1005..1079 -
1695995775.277108-CDS-E-fasciculatus_F_contig14987:1004..10791695995775.277108-CDS-E-fasciculatus_F_contig14987:1004..1079Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14987 1005..1079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14987.3531.1prot_E-fasciculatus_F_contig14987.3531.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14987 160..1079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14987.3531.1

>prot_E-fasciculatus_F_contig14987.3531.1 ID=prot_E-fasciculatus_F_contig14987.3531.1|Name=mRNA_E-fasciculatus_F_contig14987.3531.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
DGDEQEDAEFEFREEVDDEATLDAEAALAGDGDDVADELAALRAEADLPI
EELRRLAAAGHGGGEEEEAFSSDGFDSELDLEGEADDAYRGG
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mRNA from alignment at E-fasciculatus_F_contig14987:159..1079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14987.3531.1 ID=mRNA_E-fasciculatus_F_contig14987.3531.1|Name=mRNA_E-fasciculatus_F_contig14987.3531.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=921bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14987:159..1079- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGGTGATGAGCAGGAGGACGCTGAGTTTGAGTTCCGAGAAGAAGTGGA
CGACGAAGCCACCCTCGACGCAGAGGTGAGCGAGGTTTAGTCTTAGTCGG
GGCTGGAAGGGAAAAGAGGGGCGGGTTTTAGCCACGTTGGTATGGCACAG
AGGTTGTGGTTGGATGAGATAAGGGGGGGAGTTGGGGGGGGTTGGGCAGG
TGCTGTAGTGTTGCGGTTGGCGCTGCTTGCACGAAGCTGTTTCCTGGGGA
GCGTGTTGGTAGCACACGAGCGCTGCAACCGGAAACCGGTGGATTGAGAG
TATTATTATAGTTTTTGAGAAGACGTGTGATGTCCGTCGATGACGGCTGT
ATCTCAAAGAAGCTCCACACATTTTTTCAGGGTTAGAATGTTAGAATTGC
ACGTGCTCGTGGTTATTCGTCTCTGAAATCACCAAAGCACCTCCCTCCCC
TGTTGGAGACGAACAAGTGCGGAACGTTTGAAAACGGTAGTCGTACAGCA
GTCGATCACCGGACCGAGAGACGTTGGATGCCCGGTTTGCCCGTGTTCTT
CTATCACGAAAAGCGATCACCCATCAACTTCACCCCCGTCCCATCCAGAG
GCGTTGAACACCCGGGTTGCTCGTGTCATTTTATCATCACGGCAGCGAGC
ACCAATCGACTTCACCTCCACCCGATTCCCGCGCGGCACGTGCGTGCTTG
TTTGTTGTGCTTGTGACAGGCCGCCCTTGCCGGCGACGGCGACGACGTGG
CAGACGAGCTGGCCGCCCTTCGGGCGGAGGCCGACCTCCCTATCGAGGAG
CTCAGGCGTCTCGCCGCGGCCGGGCACGGCGGCGGGGAGGAAGAGGAGGC
GTTTTCGTCCGACGGTTTCGATTCAGAGCTCGACCTAGAGGGTGAAGCCG
ACGACGCGTACAGAGGAGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14987:159..1079-

>mRNA_E-fasciculatus_F_contig14987.3531.1 ID=mRNA_E-fasciculatus_F_contig14987.3531.1|Name=mRNA_E-fasciculatus_F_contig14987.3531.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14987:159..1079- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGGTGATGAGCAGGAGGACGCTGAGTTTGAGTTCCGAGAAGAAGTGGA
CGACGAAGCCACCCTCGACGCAGAGGATGGTGATGAGCAGGAGGACGCTG
AGTTTGAGTTCCGAGAAGAAGTGGACGACGAAGCCACCCTCGACGCAGAG
GCCGCCCTTGCCGGCGACGGCGACGACGTGGCAGACGAGCTGGCCGCCCT
TCGGGCGGAGGCCGACCTCCCTATCGAGGAGCTCAGGCGTCTCGCCGCGG
CCGGGCACGGCGGCGGGGAGGAAGAGGAGGCGTTTTCGTCCGACGGTTTC
GATTCAGAGCTCGACCTAGAGGGTGAAGCCGACGACGCGTACAGAGGAGG
GGCCGCCCTTGCCGGCGACGGCGACGACGTGGCAGACGAGCTGGCCGCCC
TTCGGGCGGAGGCCGACCTCCCTATCGAGGAGCTCAGGCGTCTCGCCGCG
GCCGGGCACGGCGGCGGGGAGGAAGAGGAGGCGTTTTCGTCCGACGGTTT
CGATTCAGAGCTCGACCTAGAGGGTGAAGCCGACGACGCGTACAGAGGAG
GG
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