mRNA_E-fasciculatus_F_contig14987.3533.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14987.3533.1
Unique NamemRNA_E-fasciculatus_F_contig14987.3533.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14987.3533.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.090e-46
Identity = 154/232 (66.38%), Postives = 160/232 (68.97%), Query Frame = -2 
Query:   21 LDARQGRRDDGKDNGRSDASGGXXXAANAALAELRALQEDVELPVAAVVDKLYPATQLAPPQQXXXPSTAAGGVPSPAEAEAVEA--------SQLQAGKQGDTATENEATQKXXXXXXPVANGHAGASPSAAT-------NGPARGVAVVXXXXXXXXXXXXXXXKESAAGLTASPRQKDAASMAVQPLRRRSRSSDGAPTAAAPXXXXXXAAADGLEGWIERATRDDGVG 671
            LDARQGRRDDGKD+ R D  GG X AA AALAELRALQ DVELPVAAVVDKLYPATQLAPP +   PSTAA GVPSPAE EA EA         Q QAGK+GDTA ENEAT +XXXXXX                      NGP RG A  XXXXXXXXXXXXXXX     G T SP QKDA SMAV+P RRRSRSSDGAPTA  P      A+ADGLEGWIERA RDDGVG
Sbjct:  580 LDARQGRRDDGKDSDREDVPGGGX-AAGAALAELRALQADVELPVAAVVDKLYPATQLAPPPEQQ-PSTAADGVPSPAEVEAAEAFGAVPALAPQRQAGKKGDTAAENEATPEXXXXXXXXXXXXXXXXXXXXXXXXXXXPNGPVRGDAXXXXXXXXXXXXXXXXXXX---GQTTSPLQKDAGSMAVKPPRRRSRSSDGAPTADPPTPGAGTASADGLEGWIERAARDDGVG 806
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BLAST of mRNA_E-fasciculatus_F_contig14987.3533.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.670e-19
Identity = 88/225 (39.11%), Postives = 90/225 (40.00%), Query Frame = -2 
Query:    3 AALDARQGRRDDGKDNGRSDASGGXXXAANAALAELRALQEDVELPVAAVVDKLYPATQLAPPQQXXXPSTAAGGVPSPAEAEAVEASQLQAGKQGDTATENEATQKXXXXXXPVANGHAGASPSAATNGPARGVAVVXXXXXXXXXXXXXXXKESAAGLTASPRQKDAASMAVQPLRRRSRSSDGAPTAAAPXXXXXXAAADGLEGWIERATRDDGVGVGGGAG 677
            AALDARQGR DDGKD+ R D SGG   A  AALAELRALQEDVELPVAAVVDKLYPATQLAPP             P P                                                                                                       SSDGAPTA A       A+ADGLEGWIERA RDDGVGVGGGAG
Sbjct:  436 AALDARQGRSDDGKDSDRGDVSGGGGVA-GAALAELRALQEDVELPVAAVVDKLYPATQLAPP-------------PPPT------------------------------------------------------------------------------------------------------SSDGAPTAGAQAPGAGAASADGLEGWIERAARDDGVGVGGGAG 544
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14987.3533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKD6_9PHAE1.090e-4666.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTP0_ECTSI2.670e-1939.11Similar to E1a binding protein P400 (Partial) (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14987contigE-fasciculatus_F_contig14987:2377..3066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size691
Cds size690
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927976.951664-CDS-E-fasciculatus_F_contig14987:2376..30661622927976.951664-CDS-E-fasciculatus_F_contig14987:2376..3066Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14987 2377..3066 +
1695995775.256606-CDS-E-fasciculatus_F_contig14987:2376..30661695995775.256606-CDS-E-fasciculatus_F_contig14987:2376..3066Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14987 2377..3066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14987.3533.1prot_E-fasciculatus_F_contig14987.3533.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14987 2377..3066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14987.3533.1

>prot_E-fasciculatus_F_contig14987.3533.1 ID=prot_E-fasciculatus_F_contig14987.3533.1|Name=mRNA_E-fasciculatus_F_contig14987.3533.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=230bp
LPAPPPTPTPSSRVARSIHPSRPSAAAAPAPGAGAAAVGAPSLLLDRRRR
GWTAIEAASFCRGEAVSPAALSLPPSAPPPPPPPPPLATTATPLAGPLVA
AEGEAPAWPFATGCCCCCCFCVASFSVAVSPCFPACSCDASTASASAGLG
TPPAAVDGCCCCCGGASCVAGYSLSTTAATGSSTSSWRARSSARAALAAP
PPPPEASLLPLSFPSSLRPCLASRAARRSS
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mRNA from alignment at E-fasciculatus_F_contig14987:2377..3066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14987.3533.1 ID=mRNA_E-fasciculatus_F_contig14987.3533.1|Name=mRNA_E-fasciculatus_F_contig14987.3533.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14987:2377..3066+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTACCCGCACCCCCGCCAACACCGACACCATCGTCCCGCGTCGCCCGCTC
GATCCACCCTTCCAGGCCGTCTGCCGCCGCTGCCCCAGCACCAGGAGCGG
GGGCGGCGGCGGTGGGGGCTCCGTCGCTGCTCCTAGATCGTCGTCGGAGG
GGCTGGACTGCCATCGAAGCGGCGTCTTTTTGTCGCGGCGAGGCGGTCAG
TCCAGCTGCGCTTTCCTTGCCACCGTCGGCACCACCACCACCACCGCCAC
CGCCACCGCTAGCGACCACTGCAACGCCTCTTGCCGGTCCGTTGGTCGCG
GCAGAGGGAGAGGCACCGGCGTGGCCGTTCGCCACCGGCTGCTGCTGTTG
CTGCTGCTTCTGTGTAGCCTCGTTCTCCGTGGCGGTGTCCCCCTGCTTCC
CCGCTTGTAGTTGTGATGCTTCCACCGCCTCCGCCTCCGCCGGACTTGGT
ACCCCACCGGCTGCAGTCGATGGCTGCTGCTGCTGCTGCGGCGGCGCCAG
CTGCGTCGCCGGGTACAGCTTGTCCACGACCGCCGCCACCGGGAGTTCAA
CGTCCTCCTGGAGGGCTCGGAGCTCCGCCAGGGCCGCGTTGGCCGCCCCC
CCTCCCCCCCCCGAGGCATCGCTCCTGCCGTTGTCCTTTCCGTCATCTCT
ACGGCCTTGTCTGGCGTCCAGGGCGGCTCGTCGCTCCTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14987:2377..3066+

>mRNA_E-fasciculatus_F_contig14987.3533.1 ID=mRNA_E-fasciculatus_F_contig14987.3533.1|Name=mRNA_E-fasciculatus_F_contig14987.3533.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1380bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14987:2377..3066+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTACCCGCACCCCCGCCAACACCGACACCATCGTCCCGCGTCGCCCGCTC
GATCCACCCTTCCAGGCCGTCTGCCGCCGCTGCCCCAGCACCAGGAGCGG
GGGCGGCGGCGGTGGGGGCTCCGTCGCTGCTCCTAGATCGTCGTCGGAGG
GGCTGGACTGCCATCGAAGCGGCGTCTTTTTGTCGCGGCGAGGCGGTCAG
TCCAGCTGCGCTTTCCTTGCCACCGTCGGCACCACCACCACCACCGCCAC
CGCCACCGCTAGCGACCACTGCAACGCCTCTTGCCGGTCCGTTGGTCGCG
GCAGAGGGAGAGGCACCGGCGTGGCCGTTCGCCACCGGCTGCTGCTGTTG
CTGCTGCTTCTGTGTAGCCTCGTTCTCCGTGGCGGTGTCCCCCTGCTTCC
CCGCTTGTAGTTGTGATGCTTCCACCGCCTCCGCCTCCGCCGGACTTGGT
ACCCCACCGGCTGCAGTCGATGGCTGCTGCTGCTGCTGCGGCGGCGCCAG
CTGCGTCGCCGGGTACAGCTTGTCCACGACCGCCGCCACCGGGAGTTCAA
CGTCCTCCTGGAGGGCTCGGAGCTCCGCCAGGGCCGCGTTGGCCGCCCCC
CCTCCCCCCCCCGAGGCATCGCTCCTGCCGTTGTCCTTTCCGTCATCTCT
ACGGCCTTGTCTGGCGTCCAGGGCGGCTCGTCGCTCCTCCCTACCCGCAC
CCCCGCCAACACCGACACCATCGTCCCGCGTCGCCCGCTCGATCCACCCT
TCCAGGCCGTCTGCCGCCGCTGCCCCAGCACCAGGAGCGGGGGCGGCGGC
GGTGGGGGCTCCGTCGCTGCTCCTAGATCGTCGTCGGAGGGGCTGGACTG
CCATCGAAGCGGCGTCTTTTTGTCGCGGCGAGGCGGTCAGTCCAGCTGCG
CTTTCCTTGCCACCGTCGGCACCACCACCACCACCGCCACCGCCACCGCT
AGCGACCACTGCAACGCCTCTTGCCGGTCCGTTGGTCGCGGCAGAGGGAG
AGGCACCGGCGTGGCCGTTCGCCACCGGCTGCTGCTGTTGCTGCTGCTTC
TGTGTAGCCTCGTTCTCCGTGGCGGTGTCCCCCTGCTTCCCCGCTTGTAG
TTGTGATGCTTCCACCGCCTCCGCCTCCGCCGGACTTGGTACCCCACCGG
CTGCAGTCGATGGCTGCTGCTGCTGCTGCGGCGGCGCCAGCTGCGTCGCC
GGGTACAGCTTGTCCACGACCGCCGCCACCGGGAGTTCAACGTCCTCCTG
GAGGGCTCGGAGCTCCGCCAGGGCCGCGTTGGCCGCCCCCCCTCCCCCCC
CCGAGGCATCGCTCCTGCCGTTGTCCTTTCCGTCATCTCTACGGCCTTGT
CTGGCGTCCAGGGCGGCTCGTCGCTCCTCC
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