mRNA_E-fasciculatus_F_contig14983.3528.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14983.3528.1
Unique NamemRNA_E-fasciculatus_F_contig14983.3528.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14983.3528.1 vs. uniprot
Match: D7G965_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G965_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.690e-45
Identity = 109/188 (57.98%), Postives = 120/188 (63.83%), Query Frame = 1 
Query:    1 LSHLFLLAGRVSLRRNKAAIPVALVAVLVGGAAAQTIGPALAATADDLVIGGEACSSRWDANCDGDTTDEILFWLVFWGWKAIRLYWCLRSLWAAAVWLTGTAFFIDARRRASSFLLRWGVGGPAAPGAARVPQLGGPVGXXXXXXXXXXPAMRTLEE-EQDVELAVIPPRPVVEASAAVGQHPLPLP 561
            L+H     G VSL  NK A+ V + A+LVGGA A +  PA+AATADDLVIG EACSSRWDANCDGDT DE+LFWLV W W+  +LY C RS+ AAAVWLTGTAFFIDAR                               XXXXXXXXXX  MR LEE E DVELAVI PR  V A+A   QHPLPLP
Sbjct:   19 LAHFASSGGSVSLGHNKTALVVCMAALLVGGAWADS-SPAMAATADDLVIGEEACSSRWDANCDGDTMDEVLFWLVLWIWRGYKLYACARSVRAAAVWLTGTAFFIDARXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXIMRNLEEKEDDVELAVISPRSPVAAAAVAEQHPLPLP 200
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BLAST of mRNA_E-fasciculatus_F_contig14983.3528.1 vs. uniprot
Match: A0A6H5K376_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K376_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.660e-21
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   76 AVLVGGAAAQTIGPALAATADDLVIGGEACSSRWDANCDGDTTDEILFWLVFWGWKAIRLY 258
            A++VGGA+A    PA+AATADDLVIG EACSSRWDANCDGDT DE+LFWL  W W+A +LY
Sbjct:    3 ALMVGGASADP-SPAMAATADDLVIGEEACSSRWDANCDGDTMDEVLFWLALWIWRAYKLY 62
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14983.3528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G965_ECTSI2.690e-4557.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K376_9PHAE1.660e-2172.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14983contigE-fasciculatus_F_contig14983:1138..3052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_003240.1
Exons3
Model size567
Cds size567
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14983.3528.1prot_E-fasciculatus_F_contig14983.3528.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14983 1138..3052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927976.4015884-CDS-E-fasciculatus_F_contig14983:1137..14431622927976.4015884-CDS-E-fasciculatus_F_contig14983:1137..1443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14983 1138..1443 -
1695995775.1504784-CDS-E-fasciculatus_F_contig14983:1137..14431695995775.1504784-CDS-E-fasciculatus_F_contig14983:1137..1443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14983 1138..1443 -
1622927976.4204032-CDS-E-fasciculatus_F_contig14983:2250..23571622927976.4204032-CDS-E-fasciculatus_F_contig14983:2250..2357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14983 2251..2357 -
1695995775.1597872-CDS-E-fasciculatus_F_contig14983:2250..23571695995775.1597872-CDS-E-fasciculatus_F_contig14983:2250..2357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14983 2251..2357 -
1622927976.435273-CDS-E-fasciculatus_F_contig14983:2898..30521622927976.435273-CDS-E-fasciculatus_F_contig14983:2898..3052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14983 2899..3052 -
1695995775.1676953-CDS-E-fasciculatus_F_contig14983:2898..30521695995775.1676953-CDS-E-fasciculatus_F_contig14983:2898..3052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14983 2899..3052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14983.3528.1

>prot_E-fasciculatus_F_contig14983.3528.1 ID=prot_E-fasciculatus_F_contig14983.3528.1|Name=mRNA_E-fasciculatus_F_contig14983.3528.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=189bp
LSHLFLLAGRVSLRRNKAAIPVALVAVLVGGAAAQTIGPALAATADDLVI
GGEACSSRWDANCDGDTTDEILFWLVFWGWKAIRLYWCLRSLWAAAVWLT
GTAFFIDARRRASSFLLRWGVGGPAAPGAARVPQLGGPVGGGGGGGVAAA
PAMRTLEEEQDVELAVIPPRPVVEASAAVGQHPLPLPP*
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mRNA from alignment at E-fasciculatus_F_contig14983:1138..3052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14983.3528.1 ID=mRNA_E-fasciculatus_F_contig14983.3528.1|Name=mRNA_E-fasciculatus_F_contig14983.3528.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1915bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14983:1138..3052- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTCGCACTTGTTTCTTCTTGCCGGCAGGGTCAGCCTTAGGCGGAACAA
GGCTGCAATCCCTGTGGCGCTCGTGGCAGTGTTGGTCGGGGGAGCTGCCG
CCCAAACAATAGGCCCGGCACTGGCGGCAACCGCTGACGACCTCGTCATC
GGTGGTAAGCCCGATCGCGCGGCGCCCACGGGAATTTATGAGACCACAGC
AGTACGCTTAGTGTGATGTTTGTCACCTTTTTATGCACCTGAAAATCGCA
CCAAGGGAGCGAAGAGGCAACCTTTTTATCTAGATGTTTTAGTACTATGC
TTTATATGACACACAATACATCCATCTAACTCTGTTATCATTACAGAAGG
AGTTTTTTTTAATTGCTTGCCTGATTTGTGCGTGGCTGTCCCCGAGGTAT
TCCGACGGGTCGCCGGGTTGTAAATTGTGTTGTGCTCTCGTTTCCACGGA
ACCTCTTGGACAGAGACACCCCCCCCTCCCATCCTTCCTTCTCTGCTCGA
CCTATTACCTTGCTTAGCGCCTGAGCGCGTGTTCAGCGTTCCTTGTTTAT
AATAAGACAAAGCGGGTGGTGCGCTTGCAGCCCTATTTCACCTTACACCT
TGCTCACCGCCCTGGACTGAGCGCGCTTGCTGTGTGTTTTGTGTTGTTGT
GATGACCGCGATGCTGCTGCTGCTGCTGCTGCTGCTGCTTTCCAGGTGAG
GCTTGCAGCAGCCGCTGGGACGCCAACTGTGACGGGGATACGACAGACGA
GATCCTCTTCTGGCTGGTGTTCTGGGGATGGAAAGCCATCAGGCTCTACT
GGGTGAGCATGCCAAAAAAGGGGGTTGTGTTGACTTTCGGTGTACTACGC
CGCGGTGAATTTTGTCCGCCTTCGCAGGGAGACGGACTCGTTGACATAAA
GATCAAGGCCGATTCTTTCCTATTTGCCGATTTTTTGATACAAATATTGC
CGTCGCATCTCTACGACATGGTCATGTGTTCGCCTTCGCTTCTCGCTGTA
GGAAAAGAGATTCGTCGCCATTTCAAGAAGGTTGGTGAATGCTTGCCATA
ATGTTGCCAAGGTATATCGTGCAGTAGTACGAAAATGTCGGGGAATATTG
CACCCACCCGTGTCGTTCCTTCGAACCACGACGTCGTGGTTGGAAAACAA
AATACAAACAACGTCGACATGGCAGCCTTCGCAACTCTGTAGCAGTTGGA
TTCATTCGTCGCCTTCAACGAAGGTGTTGTGGTGGTGGTGCTTGCCATTC
AGTAAAGAGTCAGGCATTTTGGCGCTTTTTTCTCTTCTTCTTTTCTACAA
AGTACAATGCCGTCCTCCGGTATTACTCTCGCCTTCTTCGTGAGCATGCG
TGATGGTATCAATATTAATCATCCGTCGTTGCTGCTGCCTTCTGCCGCTG
ACGGAGCCCCTTTTTTTTGCAAACGGTATGGAGAAAACCGTCCCAGTTTC
CATTTCTCGGGCATATGGAAGAACCATGCTCTGGCCGAAACTCGTACATA
CACAACGCGGCGAGATGATTAACTATGGCTTCTCCCGTCTCCGTCCACCA
ATCACTCTGCGCGGCGCATTTTCTTTTTCCGACCGCCCCAAAATCGTGAT
CTTCAAAAGTGTCTGCGGAGCCTGTGGGCGGCTGCGGTGTGGCTGACGGG
AACGGCCTTCTTCATCGATGCGAGGCGGAGAGCGTCCTCGTTTCTCCTCC
GCTGGGGGGTGGGAGGGCCGGCGGCTCCGGGGGCAGCTCGCGTGCCGCAA
CTTGGTGGCCCGGTAGGGGGCGGAGGAGGCGGTGGTGTTGCCGCCGCCCC
CGCCATGCGAACCTTGGAGGAGGAGCAGGATGTTGAGCTAGCCGTTATCC
CGCCGCGACCGGTAGTGGAGGCGTCGGCGGCGGTCGGGCAGCATCCGCTT
CCTTTGCCGCCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14983:1138..3052-

>mRNA_E-fasciculatus_F_contig14983.3528.1 ID=mRNA_E-fasciculatus_F_contig14983.3528.1|Name=mRNA_E-fasciculatus_F_contig14983.3528.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14983:1138..3052- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTCGCACTTGTTTCTTCTTGCCGGCAGGGTCAGCCTTAGGCGGAACAA
GGCTGCAATCCCTGTGGCGCTCGTGGCAGTGTTGGTCGGGGGAGCTGCCG
CCCAAACAATAGGCCCGGCACTGGCGGCAACCGCTGACGACCTCGTCATC
GGTGCTGTCGCACTTGTTTCTTCTTGCCGGCAGGGTCAGCCTTAGGCGGA
ACAAGGCTGCAATCCCTGTGGCGCTCGTGGCAGTGTTGGTCGGGGGAGCT
GCCGCCCAAACAATAGGCCCGGCACTGGCGGCAACCGCTGACGACCTCGT
CATCGGTGGTGAGGCTTGCAGCAGCCGCTGGGACGCCAACTGTGACGGGG
ATACGACAGACGAGATCCTCTTCTGGCTGGTGTTCTGGGGATGGAAAGCC
ATCAGGCTCTACTGGGTGAGGCTTGCAGCAGCCGCTGGGACGCCAACTGT
GACGGGGATACGACAGACGAGATCCTCTTCTGGCTGGTGTTCTGGGGATG
GAAAGCCATCAGGCTCTACTGGTGTCTGCGGAGCCTGTGGGCGGCTGCGG
TGTGGCTGACGGGAACGGCCTTCTTCATCGATGCGAGGCGGAGAGCGTCC
TCGTTTCTCCTCCGCTGGGGGGTGGGAGGGCCGGCGGCTCCGGGGGCAGC
TCGCGTGCCGCAACTTGGTGGCCCGGTAGGGGGCGGAGGAGGCGGTGGTG
TTGCCGCCGCCCCCGCCATGCGAACCTTGGAGGAGGAGCAGGATGTTGAG
CTAGCCGTTATCCCGCCGCGACCGGTAGTGGAGGCGTCGGCGGCGGTCGG
GCAGCATCCGCTTCCTTTGCCGCCGTGATGTCTGCGGAGCCTGTGGGCGG
CTGCGGTGTGGCTGACGGGAACGGCCTTCTTCATCGATGCGAGGCGGAGA
GCGTCCTCGTTTCTCCTCCGCTGGGGGGTGGGAGGGCCGGCGGCTCCGGG
GGCAGCTCGCGTGCCGCAACTTGGTGGCCCGGTAGGGGGCGGAGGAGGCG
GTGGTGTTGCCGCCGCCCCCGCCATGCGAACCTTGGAGGAGGAGCAGGAT
GTTGAGCTAGCCGTTATCCCGCCGCGACCGGTAGTGGAGGCGTCGGCGGC
GGTCGGGCAGCATCCGCTTCCTTTGCCGCCGTGA
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