mRNA_E-fasciculatus_F_contig14982.3527.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14982.3527.1
Unique NamemRNA_E-fasciculatus_F_contig14982.3527.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14982.3527.1 vs. uniprot
Match: D7G0R7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R7_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 2.000e-37
Identity = 96/109 (88.07%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:  577 GCMPGAGRSTSGAGVLGRLGGXXXXXXXXXXXXSYDREKVVTVIVTGVEADQVEIVEVSRAVVVDEAGVEIPAMTTAVVGLEIMEDFSDHESLDGRGTTSPIHSPAAMA 903
            G MPG GR+  GAGVLGR+GG XXXXXXXXXX SYDREKVVTVIVTGVEADQVEIVEVSRAV +DEAGVEIPAMTTAVVGLEIMEDFSDHES+DGR  TSPIHSPAAMA
Sbjct:  353 GWMPGVGRNAIGAGVLGRVGGGXXXXXXXXXX-SYDREKVVTVIVTGVEADQVEIVEVSRAVALDEAGVEIPAMTTAVVGLEIMEDFSDHESMDGRVATSPIHSPAAMA 460
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BLAST of mRNA_E-fasciculatus_F_contig14982.3527.1 vs. uniprot
Match: A0A6H5JA45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA45_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 4.390e-36
Identity = 237/289 (82.01%), Postives = 239/289 (82.70%), Query Frame = 1 
Query:   46 GVYPTAAAALGLGLAPHHSMEEKSETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GXGRRHSGRGAVAGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWYSRQSSLVDFAALLGRAXXXXXXXXXXXXXXXXXVPESGGGCMPGAGRSTSGAGVLGRLGGXXXXXXXXXXXX--SYDREKVVTVIVTGVEADQVEIVEVSRAVVVDEAGVEIPAMTTAVVGLEIMEDFSDHESLDGRGTTSPIHSPAAMA 903
            GVYPTAAAALGLGLAPH SMEEKSET  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G GRR SGRG VAGRGXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXX     G  M GA R+ SGAGVLGRLGGXXXXXXXXXXXX  SYDREKVVTVIVTGVEADQVEIV+VSRAV VDEAGV IPAMTT VVGLE MED SDHESLDGRG  SPIHSPAAMA
Sbjct: 1125 GVYPTAAAALGLGLAPHLSMEEKSETAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGFGGGRRLSGRGGVAGRGXXRVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-WMTGAVRNASGAGVLGRLGGXXXXXXXXXXXXXXSYDREKVVTVIVTGVEADQVEIVQVSRAVAVDEAGVAIPAMTTGVVGLETMEDLSDHESLDGRGAMSPIHSPAAMA 1412
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14982.3527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R7_ECTSI2.000e-3788.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA45_9PHAE4.390e-3682.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14982contigE-fasciculatus_F_contig14982:245..2400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1530
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14982.3527.1prot_E-fasciculatus_F_contig14982.3527.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14982 347..1776 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927976.302766-UTR-E-fasciculatus_F_contig14982:244..3461622927976.302766-UTR-E-fasciculatus_F_contig14982:244..346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14982 245..346 +
1695995775.084016-UTR-E-fasciculatus_F_contig14982:244..3461695995775.084016-UTR-E-fasciculatus_F_contig14982:244..346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14982 245..346 +
1622927976.3563352-UTR-E-fasciculatus_F_contig14982:1776..24001622927976.3563352-UTR-E-fasciculatus_F_contig14982:1776..2400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14982 1777..2400 +
1695995775.1385896-UTR-E-fasciculatus_F_contig14982:1776..24001695995775.1385896-UTR-E-fasciculatus_F_contig14982:1776..2400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14982 1777..2400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927976.3157628-CDS-E-fasciculatus_F_contig14982:346..6381622927976.3157628-CDS-E-fasciculatus_F_contig14982:346..638Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14982 347..638 +
1695995775.0966513-CDS-E-fasciculatus_F_contig14982:346..6381695995775.0966513-CDS-E-fasciculatus_F_contig14982:346..638Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14982 347..638 +
1622927976.3273845-CDS-E-fasciculatus_F_contig14982:921..12971622927976.3273845-CDS-E-fasciculatus_F_contig14982:921..1297Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14982 922..1297 +
1695995775.1139662-CDS-E-fasciculatus_F_contig14982:921..12971695995775.1139662-CDS-E-fasciculatus_F_contig14982:921..1297Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14982 922..1297 +
1622927976.3412209-CDS-E-fasciculatus_F_contig14982:1640..17761622927976.3412209-CDS-E-fasciculatus_F_contig14982:1640..1776Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14982 1641..1776 +
1695995775.1263852-CDS-E-fasciculatus_F_contig14982:1640..17761695995775.1263852-CDS-E-fasciculatus_F_contig14982:1640..1776Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14982 1641..1776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14982.3527.1

>prot_E-fasciculatus_F_contig14982.3527.1 ID=prot_E-fasciculatus_F_contig14982.3527.1|Name=mRNA_E-fasciculatus_F_contig14982.3527.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=268bp
MEEKSETAATTGGTAAASGVGGEGGEGDSSAASTSSNNNNNLDGFAGFGG
GRRHSGRGAVAGRGGGRVAGGGGGGNLADGGFFFIPASGAIAPGAAPGGN
AAAVAPADDSNSAPSASWYSRQSSLVDFAALLGRAENSNSNNNNNGGGGS
GGVPESGGGCMPGAGRSTSGAGVLGRLGGGGGSGGSGGGSGSYDREKVVT
VIVTGVEADQVEIVEVSRAVVVDEAGVEIPAMTTAVVGLEIMEDFSDHES
LDGRGTTSPIHSPAAMA*
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mRNA from alignment at E-fasciculatus_F_contig14982:245..2400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14982.3527.1 ID=mRNA_E-fasciculatus_F_contig14982.3527.1|Name=mRNA_E-fasciculatus_F_contig14982.3527.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2156bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14982:245..2400+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGAAGCATCGGCCGGCGGAGCGGCGGTAGGAGAGACGGGGGCGGTGT
CTACCCCACCGCAGCAGCTGCCCTGGGGCTCGGGTTAGCGCCGCACCATA
GCATGGAAGAGAAGTCTGAAACCGCTGCAACGACCGGGGGCACCGCAGCT
GCAAGCGGCGTTGGCGGGGAGGGAGGGGAAGGAGACTCGTCCGCCGCGTC
TACATCCTCGAACAACAACAACAACTTGGATGGATTCGCGGGTTTTGGAG
GAGGGAGGAGGCATTCCGGTCGGGGGGCGGTGGCGGGGAGAGGCGGCGGA
AGAGTCGCCGGTGGTGGTGGTGGCGGTAATCTAGCCGACGGCGGTTTCTT
TTTTATTCCTGCTTCGGGAGCGATCGCACCGGGGGCAGCACCAGGTACGC
AACTATCGCACCGCACCGGGTGTTTAGTCGTCGGTACCGTTCATGGTACC
GTTCATGGTACCGTTCATGGTGGGGGGTTCATTTAGGATAGGGAAGACAT
TTTTGACCCACCTTGGCCATTAGGAAAAGAGACGATTTGGCCGTCAGTGG
GCATCGGTCCTGTGGCAACCAATGCTCCGTCCTCTCGAGTACGCGTGGTC
TGACAGAAGTACAAGGCACGCGAAACAAGAGTACGCCCCCTCCCCCCTCC
CCCCTCCCCGTTGCGCATACCACACAGGAGGAAACGCGGCGGCGGTGGCC
CCGGCGGACGACAGCAATAGTGCACCCTCTGCATCGTGGTACTCGAGGCA
ATCCTCGCTAGTAGACTTCGCTGCGTTGCTCGGGCGGGCGGAAAACAGCA
ATAGCAACAACAACAACAACGGCGGGGGCGGAAGCGGCGGTGTACCGGAG
AGCGGGGGCGGCTGCATGCCCGGCGCGGGCAGGAGTACGAGCGGCGCGGG
GGTGCTGGGGAGGCTCGGCGGCGGCGGTGGCAGCGGCGGAAGCGGCGGCG
GAAGTGGGAGCTACGACAGGGAGAAAGTCGTGACTGTCATCGTTACGGGG
GTGGAGGCGGACCAGGTCGAGATCGTCGAGGTCTCTCGGGCCGTCGTCGT
CGAGTGAGTTATGTATGAGCCGCGCGAGTGGTGGAGTTGTGCATGGTGGA
GGCGTGAAATTGTACTCGGGGGGTCCCGCATGCTTTTGCAAGGAAGTGCG
CCGCACGCGGAGTTTGTACTACCGTAGGTGTGTATGCTTGAGGCATAAAA
ACTGTGTATTGTACGGGGGGGGGGAGTCTTGCTTCATCTGATTTTCTCGC
CAGAGAGAGTGCTGATATTGTATTTGCTTGTTGTGGTTTGACGTATCTTG
CAGGGTCGCCTTGATTTTTCCCCCTCTCTGTTTCCATTACCCATCTCCCC
CCCTCCCGCCCCGTCTTTTTTGTTTTCGTTTTTGTCATTTTTACAGCGAG
GCCGGCGTAGAAATACCGGCCATGACGACAGCGGTCGTGGGCTTGGAGAT
CATGGAAGACTTCTCGGACCACGAGTCGCTGGACGGCAGGGGCACGACGA
GTCCGATTCACTCCCCGGCTGCCATGGCGTAGTCGGTCGGTCTGCTCCCT
TGCCGCCGACAGAGGACGGGAGGGATAGCACCTTTAGCGTTACCCCCGTC
TCGTTGCCGCGGTGGCGGGGGGGGGCACGCAGAAAAGACGGGAGTTTTTG
TTTCTTCTTTTTTTTCGTGTGTGTTGTCTGTGTGTGTTGTGCTAGTGGTC
TCCTACCTCAACACCTCAACATTCGTAAGCGTTGCGCGGGGGACGGCCGT
GGAGCAAGTAGCTGGTCCATCTCTCACCAAAGGGGGCTCTGAAGCGCTCT
TGTAGCTAGCTCATCCTCTCATCCTTTCTATATCGGCCGGCTGGCTGGCT
GGCATCGATACCTATATCAATATCATCGCTTTTGAGCGTTTCTTGAACTT
GAGACGACCAATTTTTTTCTGGAGACGCATGTGGACAACCCAGACGCCTC
TTTCCAAGAGGCGCTACAATAGTCGCCAGGGGCACGGGGGGGGGGGTCTG
CTGGCCGCCGCGTGTGGTCGGGTATGCAATCAGTTTGCTGTCTGTTTGCT
AGATCTGATGGGTGTCACCTACGCATCATGTCCTTCGGTTCATCGAAGAA
CAAGTGTTGAGCCGATTTCGGACCCAAAAAAAAAGAGTGTCGCGTGTTTC
AACCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14982:245..2400+

>mRNA_E-fasciculatus_F_contig14982.3527.1 ID=mRNA_E-fasciculatus_F_contig14982.3527.1|Name=mRNA_E-fasciculatus_F_contig14982.3527.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1608bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14982:245..2400+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGAGAAGTCTGAAACCGCTGCAACGACCGGGGGCACCGCAGCTGC
AAGCGGCGTTGGCGGGGAGGGAGGGGAAGGAGACTCGTCCGCCGCGTCTA
CATCCTCGAACAACAACAACAACTTGGATGGATTCGCGGGTTTTGGAGGA
GGGAGGAGGCATTCCGGTCGGGGGGCGGTGGCGGGGAGAGGCGGCGGAAG
AGTCGCCGGTGGTGGTGGTGGCGGTAATCTAGCCGACGGCGGTTTCTTTT
TTATTCCTGCTTCGGGAGCGATCGCACCGGGGGCAGCACCAGATGGAAGA
GAAGTCTGAAACCGCTGCAACGACCGGGGGCACCGCAGCTGCAAGCGGCG
TTGGCGGGGAGGGAGGGGAAGGAGACTCGTCCGCCGCGTCTACATCCTCG
AACAACAACAACAACTTGGATGGATTCGCGGGTTTTGGAGGAGGGAGGAG
GCATTCCGGTCGGGGGGCGGTGGCGGGGAGAGGCGGCGGAAGAGTCGCCG
GTGGTGGTGGTGGCGGTAATCTAGCCGACGGCGGTTTCTTTTTTATTCCT
GCTTCGGGAGCGATCGCACCGGGGGCAGCACCAGGAGGAAACGCGGCGGC
GGTGGCCCCGGCGGACGACAGCAATAGTGCACCCTCTGCATCGTGGTACT
CGAGGCAATCCTCGCTAGTAGACTTCGCTGCGTTGCTCGGGCGGGCGGAA
AACAGCAATAGCAACAACAACAACAACGGCGGGGGCGGAAGCGGCGGTGT
ACCGGAGAGCGGGGGCGGCTGCATGCCCGGCGCGGGCAGGAGTACGAGCG
GCGCGGGGGTGCTGGGGAGGCTCGGCGGCGGCGGTGGCAGCGGCGGAAGC
GGCGGCGGAAGTGGGAGCTACGACAGGGAGAAAGTCGTGACTGTCATCGT
TACGGGGGTGGAGGCGGACCAGGTCGAGATCGTCGAGGTCTCTCGGGCCG
TCGTCGTCGAGAGGAAACGCGGCGGCGGTGGCCCCGGCGGACGACAGCAA
TAGTGCACCCTCTGCATCGTGGTACTCGAGGCAATCCTCGCTAGTAGACT
TCGCTGCGTTGCTCGGGCGGGCGGAAAACAGCAATAGCAACAACAACAAC
AACGGCGGGGGCGGAAGCGGCGGTGTACCGGAGAGCGGGGGCGGCTGCAT
GCCCGGCGCGGGCAGGAGTACGAGCGGCGCGGGGGTGCTGGGGAGGCTCG
GCGGCGGCGGTGGCAGCGGCGGAAGCGGCGGCGGAAGTGGGAGCTACGAC
AGGGAGAAAGTCGTGACTGTCATCGTTACGGGGGTGGAGGCGGACCAGGT
CGAGATCGTCGAGGTCTCTCGGGCCGTCGTCGTCGACGAGGCCGGCGTAG
AAATACCGGCCATGACGACAGCGGTCGTGGGCTTGGAGATCATGGAAGAC
TTCTCGGACCACGAGTCGCTGGACGGCAGGGGCACGACGAGTCCGATTCA
CTCCCCGGCTGCCATGGCGTAGCGAGGCCGGCGTAGAAATACCGGCCATG
ACGACAGCGGTCGTGGGCTTGGAGATCATGGAAGACTTCTCGGACCACGA
GTCGCTGGACGGCAGGGGCACGACGAGTCCGATTCACTCCCCGGCTGCCA
TGGCGTAG
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