mRNA_E-fasciculatus_F_contig14971.3525.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14971.3525.1
Unique NamemRNA_E-fasciculatus_F_contig14971.3525.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 5.670e-67
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1
Query:    1 IRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVP 357
            IRRLH+HINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRD+AD  DDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVP
Sbjct:  967 IRRLHSHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDEADRVDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVP 1085          
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.440e-59
Identity = 101/119 (84.87%), Postives = 112/119 (94.12%), Query Frame = 1
Query:    1 IRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVP 357
            +RRLH+HINSFNPVIQFAIRSNMDLK+LLRDSDAKG+LFYILNYSTKTEQTLDVLLPLL PV ERIR+ +DG+ +KELAVRLVRSCLCKQLSSL+IGGPAAASKV D+PDH+ISH  VP
Sbjct:  966 LRRLHSHINSFNPVIQFAIRSNMDLKILLRDSDAKGLLFYILNYSTKTEQTLDVLLPLLAPVAERIREQSDGAPEKELAVRLVRSCLCKQLSSLSIGGPAAASKVFDLPDHRISHPTVP 1084          
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 6.370e-59
Identity = 100/119 (84.03%), Postives = 111/119 (93.28%), Query Frame = 1
Query:    1 IRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVP 357
            +RRLH+HINSFNPVIQFAIRSNMDLK+LLRDSDAKG+LFYILNYSTKTEQ LDVLLPLL PV ERIR+ +DG+ +KELAVRLVRSCLCKQLSSL+IGGPAAASKV D+PDH+ISH  VP
Sbjct:  886 LRRLHSHINSFNPVIQFAIRSNMDLKILLRDSDAKGLLFYILNYSTKTEQNLDVLLPLLAPVAERIREQSDGAPEKELAVRLVRSCLCKQLSSLSIGGPAAASKVFDLPDHRISHPTVP 1004          
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 5.790e-53
Identity = 92/118 (77.97%), Postives = 106/118 (89.83%), Query Frame = 1
Query:    4 RRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVP 357
            +RLH HINSFNPVI FA+RSNMD+KVLL+ SDAKG+L+YILNY+TKTEQTLDVLLPLL+PVVERIR D+  + +KE+AVRLVRSCLCKQLSSL IGGPAAASKVL + D K+SH PVP
Sbjct: 1049 KRLHTHINSFNPVIAFAVRSNMDIKVLLKGSDAKGLLYYILNYATKTEQTLDVLLPLLIPVVERIRADSGDAPEKEMAVRLVRSCLCKQLSSLPIGGPAAASKVLGLSDEKLSHSPVP 1166          
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.600e-48
Identity = 86/119 (72.27%), Postives = 101/119 (84.87%), Query Frame = 1
Query:    1 IRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVP 357
            +R L  HIN +NP+I F IRSNMDL V+LRDSDA+G+L+Y+L+YSTK+EQTLDVLLPLL+PVV+RIRD  +G   KE AVRLVRSCLCKQL+SLNIGGPAAASKV  +PD KISH  VP
Sbjct:  637 LRLLSTHINPYNPIIHFLIRSNMDLNVMLRDSDARGLLYYVLHYSTKSEQTLDVLLPLLLPVVQRIRDHNEGEPAKETAVRLVRSCLCKQLTSLNIGGPAAASKVFGLPDAKISHTTVP 755          
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Match: A0A6H5J5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5A5_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 9.350e-45
Identity = 82/119 (68.91%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 IRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVP 357
            +RRL  HIN +NP+I F IRSNMD KV+LRDSDA+G+L+Y+L+YSTK+EQTLDVLLPLL  VV+R R + +G   KE AVRLVRSCLCKQL+SLNI GPAAASKV  +PD KISH   P
Sbjct:  706 VRRLSTHINPYNPIIHFLIRSNMDSKVMLRDSDARGLLYYVLHYSTKSEQTLDVLLPLLFLVVQRKRCEKEGEPAKETAVRLVRSCLCKQLTSLNIDGPAAASKVFGLPDAKISHTTAP 824          
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.690e-34
Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    4 RRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHK 336
            RR H  +NS+N +I F  RSNMD+K LLRDSDA+G LFYILNYSTKTE T+D LL +L PVVERI+D+A+G+     A +LVR+C CK ++ + +G PAAASKVL+  D K
Sbjct: 3081 RREHRKVNSYNLIIAFCTRSNMDIKALLRDSDARGALFYILNYSTKTETTMDALLNVLAPVVERIKDEAEGAPAAVTAAQLVRACSCKTVAHMPVGAPAAASKVLEYTDAK 3191          
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.150e-34
Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    4 RRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHK 336
            RR H  +NS+N +I F  RSNMD+K LLRDSDA+G LFYILNYSTKTE T+D LL +L PVVERI+D+A+G+     A +LVR+C CK ++ + +G PAAASKVL   D K
Sbjct:  209 RREHRKVNSYNLIIAFCTRSNMDIKALLRDSDARGALFYILNYSTKTETTMDALLNVLAPVVERIKDEAEGAPAAVTAAQLVRACSCKTVAHMPVGAPAAASKVLGYTDAK 319          
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.470e-32
Identity = 69/119 (57.98%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 IRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVP 357
            +RRL  HIN +NP IQF IRSNMDLKVLL D DAKGI+FYILNY+TKT                   +++ G   KE+ VRLVRSCLCKQL+SL+ GGPAAASKV D+ D KIS +  P
Sbjct:  980 LRRLGAHINPYNPFIQFVIRSNMDLKVLLEDIDAKGIMFYILNYATKTA------------------NESQGETSKEMVVRLVRSCLCKQLASLSFGGPAAASKVFDLSDAKISLYTSP 1080          
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Match: A0A6H5K2C0_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.660e-24
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 IRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPV 354
            +RR   HINS+N V+Q AIRSNMD+KV+L + DA+G++FYIL Y+TK+ +T+ ++LPLL   V RI  +     + E   R+VR  LC  LS   +GG AA  K++   D  +SH P+
Sbjct:  453 VRRGSTHINSYNWVVQQAIRSNMDIKVILGNGDARGLVFYILMYTTKSNRTVKLILPLLAEAVTRIDKEDRSEPNDERMRRIVRVSLCHLLSGTELGGAAAVCKLMGWSDTILSHKPI 570          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14971.3525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G3U9_ECTSI5.670e-6796.64ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5L0L4_9PHAE1.440e-5984.87Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K8N9_9PHAE6.370e-5984.03Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KIB1_9PHAE5.790e-5377.97ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K882_9PHAE1.600e-4872.27ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5J5A5_9PHAE9.350e-4568.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTA2_9PHAE1.690e-3459.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT57_9PHAE4.150e-3459.46ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JN07_9PHAE4.470e-3257.98ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K2C0_9PHAE4.660e-2445.76Helitron_like_N domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14971contigE-fasciculatus_F_contig14971:1923..2279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.6
Seed ortholog evalue7.8e-58
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927976.1777363-CDS-E-fasciculatus_F_contig14971:1922..22791622927976.1777363-CDS-E-fasciculatus_F_contig14971:1922..2279Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14971 1923..2279 -
1695995775.030539-CDS-E-fasciculatus_F_contig14971:1922..22791695995775.030539-CDS-E-fasciculatus_F_contig14971:1922..2279Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14971 1923..2279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14971.3525.1prot_E-fasciculatus_F_contig14971.3525.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14971 1923..2279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14971.3525.1

>prot_E-fasciculatus_F_contig14971.3525.1 ID=prot_E-fasciculatus_F_contig14971.3525.1|Name=mRNA_E-fasciculatus_F_contig14971.3525.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
IRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQ
TLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPA
AASKVLDMPDHKISHHPVP
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mRNA from alignment at E-fasciculatus_F_contig14971:1923..2279-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14971.3525.1 ID=mRNA_E-fasciculatus_F_contig14971.3525.1|Name=mRNA_E-fasciculatus_F_contig14971.3525.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=357bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14971:1923..2279- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTCGTCGTCTGCACAACCACATCAACAGCTTCAACCCTGTCATCCAGTT TGCCATTCGGAGTAACATGGACCTCAAGGTTTTGCTCCGGGACAGCGACG CCAAAGGAATTCTCTTCTACATCTTAAACTACAGCACCAAAACTGAGCAA ACTTTGGACGTTTTGCTGCCCCTTCTTGTGCCAGTAGTGGAACGGATTCG GGACGACGCCGACGGATCGGACGACAAAGAACTTGCCGTGCGCCTTGTGA GATCTTGCCTCTGCAAACAGCTATCCAGTCTTAACATTGGCGGGCCGGCG GCTGCTAGCAAAGTGCTCGACATGCCGGACCACAAGATCTCCCACCACCC CGTGCCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14971:1923..2279-

>mRNA_E-fasciculatus_F_contig14971.3525.1 ID=mRNA_E-fasciculatus_F_contig14971.3525.1|Name=mRNA_E-fasciculatus_F_contig14971.3525.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14971:1923..2279- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTCGTCGTCTGCACAACCACATCAACAGCTTCAACCCTGTCATCCAGTT
TGCCATTCGGAGTAACATGGACCTCAAGGTTTTGCTCCGGGACAGCGACG
CCAAAGGAATTCTCTTCTACATCTTAAACTACAGCACCAAAACTGAGCAA
ACTTTGGACGTTTTGCTGCCCCTTCTTGTGCCAGTAGTGGAACGGATTCG
GGACGACGCCGACGGATCGGACGACAAAGAACTTGCCGTGCGCCTTGTGA
GATCTTGCCTCTGCAAACAGCTATCCAGTCTTAACATTGGCGGGCCGGCG
GCTGCTAGCAAAGTGCTCGACATGCCGGACCACAAGATCTCCCACCACCC
CGTGCCAATTCGTCGTCTGCACAACCACATCAACAGCTTCAACCCTGTCA
TCCAGTTTGCCATTCGGAGTAACATGGACCTCAAGGTTTTGCTCCGGGAC
AGCGACGCCAAAGGAATTCTCTTCTACATCTTAAACTACAGCACCAAAAC
TGAGCAAACTTTGGACGTTTTGCTGCCCCTTCTTGTGCCAGTAGTGGAAC
GGATTCGGGACGACGCCGACGGATCGGACGACAAAGAACTTGCCGTGCGC
CTTGTGAGATCTTGCCTCTGCAAACAGCTATCCAGTCTTAACATTGGCGG
GCCGGCGGCTGCTAGCAAAGTGCTCGACATGCCGGACCACAAGATCTCCC
ACCACCCCGTGCCA
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