mRNA_E-fasciculatus_F_contig14971.3524.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14971.3524.1
Unique NamemRNA_E-fasciculatus_F_contig14971.3524.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 912 bits (2357), Expect = 2.200e-304
Identity = 572/982 (58.25%), Postives = 618/982 (62.93%), Query Frame = 2
Query:   65 WVFGYNDFASFRDLMDRTPARYTELAQYLDNIIFNQVATLADITRVMHGAVEGTSTLPVGDTCQKDPNHRHAKECLPTAPPTDCFQRDGEDRCPIHDQAYARLMYLDLAEITPGANLHKCQATCTKYNHLNSCRFGYGEEGKPLVAETVVKRGRCVFDTKGQH------------------------------------------DYRWSRVFRSLNRRCRRRCIHSSLPESFR*VHCNTHRGRRTAGSVVR*VQRR------YSSSAQPHQQLQPCHPVCHSE*HGPQGFAPGQRRQRN----------------SLLHLKLQHQN*ANFGRFAAPSCASSGTDSGRRRRIGRQRTCRAPCEILPLQTAIQS*HWRAGGC*QSARHAGPQDLPPPRAMPNVTIA---DVGI--FKRRPSGC*HQSSGR*ERQRHGRPYGR*CQHHTIQREANGGATCVLAVPQSLPSW*HRPRTSR-DVLRL----LAQACPRR-TV*PAGQQKTGPPPVFRCVRP*LRL*HRAAGRPC*PLRTTCTFPG-GETPRVSV*LRWGVQAQVATGSAGETGDGQHHARHTAQGHSTRRALPSSSLQFVPFFTLDNPKATGMLAQKLAAAEENAKRESQNASFNASPDQQQDNSDKAEVHLCDYGDDEPGRSVIPTSARRLETEFFVNDALRSFLAAGFSGDDSLPDTAFPLLSGRTRQQTMEDASKITLGTEVPASTLSVARQESLLEQKSTSCASSMADVAQPVSSPSYSTGTDGGPRIQPYLIQLRDASHEGLSDQARGERGARRLATNATVFNTEVGRTSSLPHSVAVSIAQEFGLNRKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECQAIAAKVPRGRLLTVAYQGKQAASVGGTTVHSVCSTGSRDGGNLSGDHDYQSSLPETKAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFPLHKAKPFGNR 2782
            WVFGYNDFASFRDLMDRTPARYTELAQYLDNIIFNQVATLADITRVMHG VEG STLPVGDTCQ DPNHRHAKECLPTAPPT+CF RDGEDRCP+HDQ YARLMYLDLA ITPGANLHKC ATCTKYNHLNSCRFGYGEEGKPLVAETVVKRGRCVFDTKG                                            D    R    + R      +HS +  SF  V     R       ++R    +       + S +  Q L    P+            P   R R+                S L  +L   N         P+ AS   D    +          PC + PL T      W    C +     G    P              DV I  FK + +            QR    Y   C         +G          S   W    R  R D L      LAQ+     T       + G P     V P  R      GRP       C +   GE        +W    QV           +   R   Q  +  R L      ++PFFTLD+ K TGMLAQKLAAAEE AKRE+QNASF ASPD+QQDNSDKAEVHLCDYGDDEPGRSVIPTSARRL+TEFFVNDALRSFLAAGFSGDDSLP++AFPLLSGRTRQQTMEDAS ITLGT+V ASTL VARQES L+QKSTSCA+SMAD AQPVSSPSYSTGTDGGP +QPYLI+LR AS EGLSDQARGER ARR+ATNA V  T+VGRTS+L HSVAVSIAQEFGLNR+QRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIEC AIAA+VPRGRLLTVAYQGKQAASVGGTTVHSVCSTGSRDGGNLSGDHD QSSLP+ KAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFP+HKAKPFGNR
Sbjct:  752 WVFGYNDFASFRDLMDRTPARYTELAQYLDNIIFNQVATLADITRVMHGGVEGISTLPVGDTCQTDPNHRHAKECLPTAPPTNCFPRDGEDRCPVHDQDYARLMYLDLAGITPGANLHKCNATCTKYNHLNSCRFGYGEEGKPLVAETVVKRGRCVFDTKGNMIIDGVVYSVHSTDDAAAAASTPAFQTAFDESIATLIGDDGLPDPLSDRFSADIRR------LHSHI-NSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPL----------LVPVVERIRDEADRVDDKELAVRLVRSCLCKQLSSLN------IGGPAAASKVLDMPDHKISHHP----VPCPMSPLLT------W---ACSRDGPLDGDTSRPDDXXXXXXXXXXXXDVIITPFKGKLTVA----------QRAYLLYRNRCHPDDTGHVLHG---------MSYVFWHKLVRVIRYDPLDNRQPDLAQSSDASDTDSDCDTVQPGDP-----VSPSGRRASARTGRP-----RACRYDFVGEYKH-----KW---QQVLREKPAMVNIMRDIPRKDTQPVAHCRLL---LCMYIPFFTLDDLKTTGMLAQKLAAAEETAKREAQNASFTASPDKQQDNSDKAEVHLCDYGDDEPGRSVIPTSARRLQTEFFVNDALRSFLAAGFSGDDSLPESAFPLLSGRTRQQTMEDASHITLGTDVAASTLFVARQESSLQQKSTSCAASMADDAQPVSSPSYSTGTDGGPPVQPYLIRLRAASQEGLSDQARGERDARRVATNAAVAQTDVGRTSNLQHSVAVSIAQEFGLNRRQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECPAIAAEVPRGRLLTVAYQGKQAASVGGTTVHSVCSTGSRDGGNLSGDHDDQSSLPDAKAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFPIHKAKPFGNR 1657          
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 481 bits (1238), Expect = 3.670e-143
Identity = 406/1129 (35.96%), Postives = 510/1129 (45.17%), Query Frame = 2
Query:   65 WVFGYNDFASFRDLMDRTPARYTELAQYLDNIIFNQVATLADITRVMHGAVEGTSTLPVG--DTCQK--DPNHRHAKECLPTAPPTDCFQRDGEDRCPIHDQAYARLMYLDLAEITPGANLHKCQATCTKYNHLNS-------------CRFGYGEEGKPLVAETVVKRGRCVFDTKGQ---------HDYRWSRVFRSLNRRCR----------RRCIHSSLPES--FR*VHCNTHRGRRTAGSVVR*VQRR--------------------YSSSAQPHQQLQPCHPVCH---SE*HGPQGFAPGQRRQRNSLLHLKLQHQN*ANFGRFAAPSCASSGTDSGRRRRIGRQRTCRAPCEILPLQTAIQS*HWRAGGC*QSARHAGPQDLPPPRAMPNVTIADVGIF--------------------KRRPSGC*H---QSSG-------R*ER--QRHGRPYGR*CQHHTIQREANG--------------GATCVLAVPQSLPSW*HRPRTSRDVLRLLAQACPRRTV*PAGQQKTGPPPVFRCVRP*LRL*HRAAGRPC*PLRTTCTFPGG----ETPRVSV*LRWGVQAQVATGSAGETGDGQHHARHTAQGHSTRRALPSSS--------------------------------------LQFVPFFTLDNPKAT-----------------------------GMLAQKLAAAEENAKRESQNASFNASPDQQQDNSDKAEVHLCDYG-DDEPGRSVIPTSARRLETEFFVNDALRSFLAAGFSGDDSLPDTAFPLLSGRTRQQTMEDASKITLGTEVPASTLSVARQESLLEQ------------------------------------------KSTSCASSMA--DVAQPVSSPSYSTGTDGGPRIQPYLIQLRDASHEGLSDQARGERGARRLATNATVFNTEVGRTSSLPHSVAVSIAQEFGLNRKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECQAIAAKVPRGRLLTVAYQGKQAASVGGTTVHSVCSTGSRDGGNLSGDHDYQSSLPETKAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFPLHKAKPFGNR 2782
            W++GYNDF SFR LMD+TP RYTELA+YLDNI+FNQ+ATLADI RVM G         VG  D+ Q   DP  R AKEC+P  P    F   GE        AYARLMYLDLA +TPGANLHKCQATC KYNH +S             CRFG+G++G+PL  ETVV+RGRCVFDT G          H         + N   +          R+ +  S P S  F   H   H    +   V+    R                      + + +  Q L    P+            G AP +      +     +  +    G  AA S     +D        +      PC + PL T      W +     +     P D             D G+                     + RP    H   Q S        R E+    HGRP G+       Q  A G              G  C+   P S PS   R  ++R   R   +A  R  +    Q K     +   VR  L            PL T  TF       E P +S      +   V T             +  A G S+    P  S                                        FVPFFTLD+ K                               GMLAQKLAAAEE AKR ++    +  PD   DN    +V L  YG +DEPG SVIP + RR+ T+ FV+DA R+F+AAGF+GD S PD + PLLSGR+ +    D S +  GT++ A+T  ++RQE+ LE                                           KS+S AS++A  D     +  S S G      I+PY+I+LR AS +GLS +A   R  RR  TNA V +T++G  ++L H  A SIAQEFGLNRKQR AF+IFANGLLAQ RP+PP ALR+YIGGGAGTGK+HVL+AI+AF++   +   +PR RLL VA+QGKQAA+VGGTTVHSVC       G LSG H+ QS+LP +KA HWKG  VLAIEE+SM+ CNLLV+LH  ACSMFPLHK +PFGNR
Sbjct:  816 WIYGYNDFVSFRALMDKTPRRYTELARYLDNIVFNQIATLADINRVMRGVDPAHLPPEVGNHDSAQPALDPLLRDAKECMPVPPARSTFPPQGEPPDEDLRDAYARLMYLDLACVTPGANLHKCQATCHKYNHKDSTRXXXXXXXXXXXCRFGFGDDGRPLAQETVVQRGRCVFDTSGNMTIDGVVYSHSSADDAAAAAANAAFQEAFDNAVADVRQELARSDPVSGRFSVEHKRLHTHINSFNPVIAFAVRSNMDIKVLLKGSDAKGLLYYILNYATKTEQTLDVLLPLLIPVVERIRADSGDAPEKEMAVRLVRSCLCKQLSSLPIGGPAAASKVLGLSDE-------KLSHSPVPCPMTPLLT------WASKRDKPADADNSPGDDXXXXXXXXXXXDDSGVIITPFQGKLTVAQRTHLLYRSRCRPDDTEHPLHQKSYFAWCREVRIEKCPTLHGRPRGK-------QPSARGNDDDDVDDVDDGHPGDECLDDDPVS-PSG--RTASTRAPRRGRPRAT-RYELVGEYQNKWEQGALHPYVRTRLY-----------PLCTCLTFARTHIVREKPAIS-----NIIKDVPTSDT----------QPVAHGFSSFPLFPCLSSARRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLLICMFVPFFTLDDLKRADETWPDALRRADDDNRWDPGTYPFRLNIEGMLAQKLAAAEETAKRRAERQLLSEKPDTLGDNV-AGDVLLDSYGGEDEPGESVIPATVRRMLTDLFVDDAFRTFVAAGFNGDGSSPDGSSPLLSGRSMEDACRDISFVCGGTDLEAATAFISRQENELENIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSSSSASALAGSDSHTTTAGSSNSIGVPKEDPIEPYIIELRKASQDGLSPEACRARDERRDRTNAEVADTDIGAVAALQHVAAFSIAQEFGLNRKQRQAFYIFANGLLAQCRPDPPPALRLYIGGGAGTGKTHVLRAIRAFVDSPPVKRLLPRARLLCVAFQGKQAAAVGGTTVHSVCPNTDDSDGCLSGAHEGQSTLPASKAAHWKGDVVLAIEEISMISCNLLVRLHNTACSMFPLHKGQPFGNR 1893          
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 455 bits (1170), Expect = 2.020e-136
Identity = 253/400 (63.25%), Postives = 286/400 (71.50%), Query Frame = 3
Query:  468 LAMGKKGSHLSLKPS*NEDDAFSTRRGNMTIDGVVFSVHSTDDAAAAASTPAFQKVFDESIATLIGDDGLPDPLSDRFSADIRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVPCPMSPLLTWASSRDGPLDADTSRPDDESDSDTEDPMDGDVSI--TPFKGKLTVAQRAYLLYRNRCRPGDTGHVLHGMSYVFWHKLVRVERYDPLDNKKPDPPQSSDASDPDSDCDTVQPGDPVSPC---------------ARRAPSRAGRRRACRYDFVGEYKHKWQQVLREKPAMVNIMRGIPRKDTQPVAHCRLLLC 1616
               G KG  L  K             GNMTI+G+V+S  S  DAAAAAS  AF+  FD SIA L+ D+GLPDPLSDRF+A++RRLH+HINSFNPVIQFAIRSNMDLK+LLRDSDAKG+LFYILNYSTKTEQTLDVLLPLL PV ERIR+ +DG+ +KELAVRLVRSCLCKQLSSL+IGGPAAASKV D+PDH+ISH  VPC MSPLLTWA+SRDGPLD +  R DD SD    +  D + SI  TPFKGKLTVAQR YLLY  RC P DT + +HGMSYV WHKLVR+ER  P  N     P  +D SD DS+      GD                    A R P+R GR RA R  FVG++K+KW QV+REK AMVNIMR IPR DTQPVAH RLLLC
Sbjct:  885 FGFGDKGKPLVQKTVVQRGRCVFDTDGNMTINGIVYSWSSAKDAAAAASNEAFRAAFDASIAHLVNDNGLPDPLSDRFTAELRRLHSHINSFNPVIQFAIRSNMDLKILLRDSDAKGLLFYILNYSTKTEQTLDVLLPLLAPVAERIREQSDGAPEKELAVRLVRSCLCKQLSSLSIGGPAAASKVFDLPDHRISHPTVPCSMSPLLTWATSRDGPLDGEVDRVDDSSDXXXXNDSDVEESIIITPFKGKLTVAQRVYLLYLKRCDPNDTTNPVHGMSYVVWHKLVRLERCLPGRNH----PAPTDRSDDDSESS----GDDXPXXXXXIGXXXXXXXDVPATRRPAR-GRPRANRLRFVGDFKNKWHQVMREKTAMVNIMRDIPRADTQPVAHARLLLC 1275          
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 404 bits (1037), Expect = 3.030e-120
Identity = 228/372 (61.29%), Postives = 260/372 (69.89%), Query Frame = 3
Query:  468 LAMGKKGSHLSLKPS*NEDDAFSTRRGNMTIDGVVFSVHSTDDAAAAASTPAFQKVFDESIATLIGDDGLPDPLSDRFSADIRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVPCPMSPLLTWASSRDGPLDADTSRPDDESDSDTEDPMDGDVSI--TPFKGKLTVAQRAYLLYRNRCRPGDTGHVLHGMSYVFWHKLVRVERYDPLDNKKPDPPQSSDASDPDSDCDTVQPGDPVSPC---------------ARRAPSRAGRRRACRYDFVGEYKHKWQQVLR 1532
               G KG  L  K             GNMTI+G+V+S  S  DAAAAAS  AF+  FD SIA L+ D+GLPDPLSDRF+A++RRLH+HINSFNPVIQFAIRSNMDLK+LLRDSDAKG+LFYILNYSTKTEQ LDVLLPLL PV ERIR+ +DG+ +KELAVRLVRSCLCKQLSSL+IGGPAAASKV D+PDH+ISH  VPC MSPLLTWA+SRDGPLD +  R DD SD    +  D + SI  TPFKGKLTVAQR YLLY  RC P DT + +HGMSYV WHKLVR+ER  P  N     P  +D SD DS+      GD                    A R P+R GR RA R  FVG++K+KW QV R
Sbjct:  805 FGFGDKGKPLVQKTVVQRGRCVFDTDGNMTINGIVYSWSSAKDAAAAASNEAFRAAFDASIAHLVNDNGLPDPLSDRFTAELRRLHSHINSFNPVIQFAIRSNMDLKILLRDSDAKGLLFYILNYSTKTEQNLDVLLPLLAPVAERIREQSDGAPEKELAVRLVRSCLCKQLSSLSIGGPAAASKVFDLPDHRISHPTVPCSMSPLLTWATSRDGPLDGEVDRVDDSSDXXXXNDSDVEESIIITPFKGKLTVAQRVYLLYLKRCDPNDTTNPVHGMSYVVWHKLVRLERCLPGRNH----PAPTDRSDDDSESS----GDDXPXXXXXIGXXXXXXXDVPATRRPAR-GRPRANRLRFVGDFKNKWHQVPR 1167          
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 4.800e-102
Identity = 207/421 (49.17%), Postives = 266/421 (63.18%), Query Frame = 2
Query: 1619 FVPFFTLDNPKAT-----------------------------GMLAQKLAAAEENAKRESQNASFNASPDQQQDNSDKAEVHLCDYG-DDEPGRSVIPTSARRLETEFFVNDALRSFLAAGFSGDDSLPDTAFPLLSGRTRQQTMEDASKITLGTEVPASTLSVARQESLLEQKSTSCASSM--ADVAQPVSSPSYSTGTDGGPRIQPYLIQLRDASHEGLSDQARGERGARRLATNATVFNTEVGRTSSLPHSVAVSIAQEFGLNRKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECQAIAAKVPRGRLLTVAYQGKQAASVGGTTVHSVCSTGSRDGGNLSGDHDYQSSLPETKAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFPLHKAK-PFGNR 2782
            FVPFFTLD+ K                               GMLAQKLAAAEE AKR ++    +       DN    +V L  YG +DEPG SVIP + RR+ T+ FVNDA R+F+AAGF+GD S  D + PLLSGR+ + T  D S +  GT++ A+T S++RQE+               +D  +  ++ S S G      + P +++LR AS +GLS +A   R  RR  TNA V  T++G  ++L H  A +IAQEFGLNRKQR AF+IFANGLL+Q RP+PP ALR+YIGGGAGTGK+HVL+AI+AF++   +   +PR RLL VA+QGKQAA+VGGTTVHSVC       G LSG H+ QS+LP ++A HW+   +LAIEE SM+ CNLLV+LH  ACSMFPLHK + PFGNR
Sbjct:   26 FVPFFTLDDLKRADETWPDALRRADDKNRWDPGTYPFRLNIQGMLAQKLAAAEETAKRHAERQLLSEKTHALGDNM-AGDVLLDSYGGEDEPGESVIPATVRRMLTDLFVNDAFRTFVAAGFNGDGSTRDASSPLLSGRSMEDTCLDISFVRGGTDLEAATASMSRQENXXXXXXXXXXXXXXGSDSNRTPAASSSSFGVPNEDPLGPCIMELRKASQDGLSPEACRARDERRDRTNAEVAGTDIGAVAALQHVAAFTIAQEFGLNRKQRQAFYIFANGLLSQFRPDPPPALRLYIGGGAGTGKTHVLRAIRAFVDSPPVKRLLPRARLLCVAFQGKQAAAVGGTTVHSVCPNTGDSYGCLSGAHEGQSTLPASEAAHWQRDVILAIEESSMISCNLLVRLHNTACSMFPLHKGQQPFGNR 445          
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 2.730e-95
Identity = 294/941 (31.24%), Postives = 425/941 (45.16%), Query Frame = 2
Query:   65 WVFGYNDFASFRDLMDRTPARYTELAQYLDNIIFNQVATLADITRVMHG--------AVEGTSTLPVGDTCQKDPNHRHAKECLPTAPPTDCFQRDGEDRCPIHDQAYARLMYLDLAEITPGANLHKCQATCTKYNHLNSCRFGYGEEGKPLVAETVVKRGRCVFDTKGQHDYRW--------SRVFRSLNRRCRRRCIHSSLPESFR*VHCNTH--RGRRTAGSVVR*VQRRYSSSAQPHQQLQPCHPVCHSE*HGPQGFAPGQRRQRNSLLHLKLQHQN*ANFG------RFAAPSCASSGTDSGRRR--RIGRQRTCRAPCEILPLQTAIQS*HWRAGGC*QSARHAGPQDLPPPRAMPNVTIADVGIFKRRPSGC*HQSSGR*ERQRHGRPYGR*CQHHTIQREANGGATCVLAVPQSLPSW*HRPRTSRDVLRLLAQACPRRTV*PAGQQKTGPPPVFRCVRP*LRL*HRAAGRPC*PLRTTCTFPGGETPRVSV*LRWGVQAQVATGSAGETGDGQHHARHTAQGHSTRRALPSSSLQFVPFFTLDNPKATGMLAQKLAAAEENAK---RESQNASFNASPDQQQDNSDKA---EVHLCDYGDDE-PGRSVIPTSARRLETEFFVNDALRSFLAAGFSGDDSLPDTAFPLLSGRTRQQTMEDASKITLGTEVPASTLSVARQESLLEQKSTSCASSMADVAQPVSSPSYSTGT-DGGPRI-QPYLIQLRDASHEGLSDQARGERGARRLATNATVFNTEVGRTSSLPHSVAVSIAQEFGLNRKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECQAIAAKVPRGRLLTVAYQGKQAASVGGTTVHSVCSTGSRD-GGNLSGDHDYQSSLPETKAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFPLHKAKPFGN 2779
            WV+GYNDF+ FR+LMD++P +Y +LA++L+ +IFNQVATL D      G        A E T T   G     DP H  AKE +   PPT CF RDG DRC +HD+A++RL+YLDLAEITP  +LHKCQ  C K+NH +SCRFGYG++GK    ET V RG C F T G              S           +    +S+ E     +CN++    R TA      V RR  +   P                    + P  +    S + LK+  ++    G       +A  +   S  ++ +    R+ R   C+    +     A  S  +      + + +  P  +    A      A      R  + C    +   E   H   Y    +   ++R   G + CV           +R  T  D         P+ T    G+  + P   + CV    +   +   R    +      P  +T +                        + H R                  F+PFF L N K +    +      E++    ++  N   +A      D++      ++ L +YGDD+    SVIP +A  L T+  V              D +LP  ++   SGR+ +    D +KIT  +     T  +A+QE  LE  + S  +S+A+          +T + +  P++  PYL++LR AS                                            EFGLNRKQRLAFF+F+NG+LA+      ++LR+YIGGGA +GKSHVLKA+KAFIEC A+  ++   R+L VA++G+QAA+VGGTT+HSVC  G +   G+LS +HD QS + +T+A+HWKGV++LA+EEVSMVGC LLV L+KAACSMFP+HK KPFGN
Sbjct:  760 WVYGYNDFSIFRELMDKSPEKYNKLARFLEQVIFNQVATLTDTNLAFDGHEYEHMSRASEDTGTSEAGP----DPQHVAAKERIARPPPTACFPRDGVDRCRVHDEAFSRLVYLDLAEITPAVSLHKCQLACNKFNHRDSCRFGYGKDGKAFEQETAVLRGPCTFHTNGNMTINGVVYPPGDPSTSSGIAAAAAFQAAFDASISELDDGDNCNSNPKADRFTA------VLRRLGAHINP--------------------YNPFIQFVIRSNMDLKVLLEDIDAKGIMFYILNYATKTANESQGETSKEMVVRLVRSCLCKQLASLSFGGPAAASKVFDLSDA-KISLYTSPCPMGSLIAFGGKLTAKQRSHLRYRNRCDRTDT---EHPLHCVSYVVWHRPVRVERYTPGASNCV-----------NRSDTDNDSSDDDMDE-PQHTPQRRGRASSDP---YDCVGKYRKKWIQVVRRKAVMVNIMRDIPRADTQQ------------------------EDHCRLLL-------------CMFLPFFDLSNLKNSDESWESAMQRVEDSDSWDKQRANKENDAPMSHSLDDAGHGAENDIFLIEYGDDDNDSASVIPETAIGLRTKIVV--------------DTALPVRSWHPRSGRSTEDVETDLTKITSWSGSSDPTY-MAQQEKCLEAMTESEVASLAESTSXXXXXXXTTDSHEYDPKVLDPYLLELRSASQA------------------------------------------EFGLNRKQRLAFFVFSNGMLAKKVSPGSDSLRLYIGGGAKSGKSHVLKAMKAFIECPALVGQIEDSRMLAVAFRGQQAAAVGGTTIHSVCQVGRKTFRGSLSRNHDDQSPMKDTQAIHWKGVNMLAVEEVSMVGCELLVALNKAACSMFPMHKDKPFGN 1557          
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 2.100e-79
Identity = 166/332 (50.00%), Postives = 196/332 (59.04%), Query Frame = 3
Query:  681 DPLSDRFSADIRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVPCPMSPLLTWASSRDGPLDADTSRPDDESDSDTEDPMDGD--------------------VSITPFKGKLTVAQRAYLLYRNRCRPGDTGHVLHGMSYVFWHKLVRVERYDPLDNKKPDPPQSSDASDPDSDCDTVQPGDPVSPCARRAPSRAGRRRACRYDFVGEYKHKWQQVLREKPAMVNIMRGIPRKDTQPVAHCRLLLC 1616
            +P SDRF+A +R L  HIN +NP+I F IRSNMDL V+LRDSDA+G+L+Y+L+YSTK+EQTLDVLLPLL+PVV+RIRD  +G   KE AVRLVRSCLCKQL+SLNIGGPAAASKV  +PD KISH  VPCPM PLL WASSRD P                E+P DGD                    V ++   G+LTV Q A++LY +RC P DT H LHGMSYV W +LVR ERY P                                                  F   Y  + Q+V+R+ P MVNIMR IPR DT+P AHCRLLLC
Sbjct:  627 EPESDRFTATLRLLSTHINPYNPIIHFLIRSNMDLNVMLRDSDARGLLYYVLHYSTKSEQTLDVLLPLLLPVVQRIRDHNEGEPAKETAVRLVRSCLCKQLTSLNIGGPAAASKVFGLPDAKISHTTVPCPMGPLLAWASSRDTP---------------DEEPDDGDSTSGDXXXXXXXXXSDDQHGVVVSVVGGRLTVNQWAHVLYLHRCSPEDTEHALHGMSYVSWTRLVRTERYTP--------------------------------------------------FKKAYNCR-QRVMRQGPVMVNIMRDIPRSDTKPEAHCRLLLC 892          
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Match: A0A6H5J5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5A5_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 7.060e-63
Identity = 154/378 (40.74%), Postives = 191/378 (50.53%), Query Frame = 3
Query:  546 GNMTIDGVVFSVHSTDDAAAAASTPAFQKVFDESIATLIGDDGLPDPLSDRFSADIRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVPCPMSPLLTWASSRDGPLDADTSRPDDESDSDTEDPMDGD--------------------VSITPFKGKLTVAQRAYLLYRNRCRPGDTGHVLHGMSYVFWHKLVRVERYDPLDNKKPDPPQSSDASDPDSDCDTVQPGDPVSPCARRAPSRAGRRRACRYDFVGEYKHKWQQVLREKPAMVNIMRGIPRKDTQPVAHCRLLLCS 1619
            G MTI GVV+       A +  +  AFQ  F+E ++         +P SDRF+A +RRL  HIN +NP+I F IRSNMD KV+LRDSDA+G+L+Y+L+YSTK+EQTLDVLLPLL  VV+R R + +G   KE AVRLVRSCLCKQL+SLNI GPAAASKV  +PD KISH   PC M P L WA SRD P                E+P DGD                    V ++   G+LTV QRA++LY +RC                   L+++                                    PC                            V+R+ P MVNIMR IPR DT+P AHCRLLLC+
Sbjct:  657 GGMTISGVVYPPGDPSTAESMVAAQAFQNAFNECVSVA------SEPESDRFTATVRRLSTHINPYNPIIHFLIRSNMDSKVMLRDSDARGLLYYVLHYSTKSEQTLDVLLPLLFLVVQRKRCEKEGEPAKETAVRLVRSCLCKQLTSLNIDGPAAASKVFGLPDAKISHTTAPCSMRPSLAWAPSRDAP---------------DEEPDDGDSTSGDXXXXXXXXASDDQHGVVVSVVGGRLTVNQRAHVLYLHRC-------------------LLKIRSM---------------------------------PCT---------------------------VMRQGPVMVNIMRDIPRSDTKPEAHCRLLLCT 934          
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 9.800e-63
Identity = 278/980 (28.37%), Postives = 397/980 (40.51%), Query Frame = 2
Query:  107 MDRTPARYTELAQYLDNIIFNQVATLADITRVMHGAVEGTSTLPVGDTC-QKDPNHRHAKECLPTAPPTDCFQRDGEDRCPIHDQAYARLMYLDLAEITPGANLHKCQATCTKYNHLNSCRFGYGEEGKPLVAETVVKRG-RCVF------------------DTKGQHDYRWSRVFRSLNRRC-------RRRCIHSSLPESFR*VHCNTHRGRRTAGSVVR*VQR----------------------RYSSSAQPHQQ-----LQPCHPVCHSE*HGPQGFAPGQRRQR----NSLLHLKLQHQN*ANFGRFAAPSCASSGTDSGRRRRIGRQRTCRAPCE-ILPLQTAIQS*HWRAGGC*QSARHAGPQDLPPPRA-MPNVTIADVGIFKRRPSGC*HQSSGR*ERQRHGRPYGR*CQHHTIQREANGGATCVLAVPQSLPSW*HRPRTSRDVLRLLAQACPRRTV*PAGQQKTGPPPVFRCVRP*LRL*HRAAGRPC*PLRTTCTFPGGETP-RVSV*LRWGVQAQVATGSAGETGDGQHHARHTA-------QGHSTRRALPSS---SLQFVPFFTLDNPKAT-------GMLAQKLAAAEENA---------KRESQNASFNASPDQQQDNSDKAEVHLCDYGDDEP-GRSVIPTSARRLETEFFVNDALRSFLAAGFS--GDDSLPDTAFPLLSGRTRQQTMEDASKITLGTEVPASTLSVARQESLLEQKSTSCASSMADVAQPVSSPSYSTGTDGGPRIQPYLIQLRDASHEGLSDQARGERGARRLATNATVFNTEVGRTSSLPHSVAVSIAQEFGLNRKQRLAFFIFANGLLAQSRPNPPEALRIYIGGGAGTGKSHVLKAIKAFIECQAIAAKVPRGRLLTVAYQGKQAASVGGTTVHSVCSTGSRDGGNLSGDHDYQSSLPETKAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFPLHKAKPFG 2776
            MD+TP  Y ELA +L   IF+QVA+  D+   M G +E ++    G     +DP  R A E +   PP+ CF   G +R    D+ Y   +  +LAEIT  AN+H+C  TC K+ H NSCRFG+G++GKPL + T V+RG R ++                  D     D   ++    + +         R +   +++ E F   H   HR   +   ++    R                       YS+  +         L P       E  G        +  R     ++ H+ +            AP+ AS        +     RTC  P + +L L +A       A G  ++A                +  I +    K R S   H+             Y R C  +  +   +G    V A    L    + PR  +           RR      ++                   R  GR   PL     F G  T  +  V     +   +      +    ++HA+          + H  R    +S   +L+      L + ++T       GML Q+ AA EEN          +R    A   A  D         ++   D  D +P G +V+P +        +VN+A+   L AGFS   +D LP  A  LLSGR+  Q   DASK                 ++LL+ + T  A+++ D A  V++    T       + PYL  LR  S  GLS  A+     RR  TN  V  T+VGR+S   H     IA EFGLNRKQRLAFFIF    +A+     P ALR+++ GGAG+GKS+VL+AI A I+C A+   V  G LLTVA+QGK AA+VGG TVHSV     ++      +   Q+ L E KA  W   + LAIEEVSMV C  L  LHKAA S+ P   + PF 
Sbjct:    1 MDKTPDSYQELASFLSRTIFSQVASDEDVQHAMTGGIEPSNAPEDGTPPPSRDPLKRPATETIAMPPPSACFPPPGVERDVAADEQYLGPLRAELAEITKAANMHQCTYTCHKHGHANSCRFGFGKDGKPLESRTCVQRGFRQIYPNGDSVVGGVLYSASQSRDAIAAADAAAAKEEEEIQKFADESDDVSRGKLDFATVAERFTAKHRREHRKVNSYNLIIAFCTRSNMDIKALLRDSDARGALFYILNYSTKTETTMDALLNVLAPVVERIKDEAEGAPAAVTAAQLVRACSCKTVAHMPV-----------GAPAAASKVLGYTDAKSAPDARTC--PMKPLLALASASFDALPPAEGSNENADXXXXXXXXXXXXDYHSGAILNTSGGKIRISISLHEL------------YLRRCLPNDTEHPYHGMCYAVWA---RLVRIENTPRKQKPA---------RRPNDDNDRESGXXXXXXXXXXXXXXAARRKRGR---PLAKRHDFVGLPTVHKQQVTREEPILINIMRDVPKQDTQPENHAQLLLCLYKPFFKIHDLRLPDEASWAVALRRTEESGLWDQRSTSMRINIKGMLRQRHAADEENRASSVLQSLRRRRPLGACGGADID--------GDIFGADVDDTDPAGPNVMPPARNAHRVSAYVNNAVDRCLDAGFSRTDNDRLPQAA--LLSGRSSHQIAADASK-----------------DALLKTRETEAATAVPDDAPDVAA----TKPYNADALSPYLRDLRSKSEAGLSKDAKDRMDRRRKETNEAVAKTDVGRSSPQQHDAVRRIADEFGLNRKQRLAFFIFGAAWIARDGVPTPNALRLHVSGGAGSGKSYVLRAIVALIDCPALKGVVQPGGLLTVAFQGKAAANVGGNTVHSVADVPRKNNDGAMDNTIGQTGLSEAKAARWTHAAALAIEEVSMVSCLQLGSLHKAAVSVRPSSASLPFA 909          
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.640e-45
Identity = 120/305 (39.34%), Postives = 159/305 (52.13%), Query Frame = 3
Query:  468 LAMGKKGSHLSLKPS*NEDDAFSTRRGNMTIDGVVFSVHSTDDAAAAASTPA------FQKVFDESIATLIGDDGLPDPLSDRFSADIRRLHNHINSFNPVIQFAIRSNMDLKVLLRDSDAKGILFYILNYSTKTEQTLDVLLPLLVPVVERIRDDADGSDDKELAVRLVRSCLCKQLSSLNIGGPAAASKVLDMPDHKISHHPVPCPMSPLLTWASSRDGPLDADTSRPDDESDSDTEDPMD------------GDVSITPFKGKLTVAQRAYLLYRNRCRPGDTGHVLHGMSYVFWHKLVRVE 1328
               GK G  L  +             G+  + GV++S   + DA AAA   A       QK  DES     G       +++RF+A  RR H  +NS+N +I F  RSNMD+K LLRDSDA+G LFYILNYSTKTE T+D LL +L PVVERI+D+A+G+     A +LVR+C CK ++ + +G PAAASKVL+  D K +     CPM PLL  AS+    L      P  E  ++  D                   +    GK+ ++   + LY  RC P DT H  HGM Y  W +LVR+E
Sbjct: 2994 FGFGKDGKPLESRTCVQRGFRQIYPNGDSVVGGVLYSASQSRDAIAAADAAAAKEEEEIQKFADESDDVSRGKLDFA-TVAERFTAKHRREHRKVNSYNLIIAFCTRSNMDIKALLRDSDARGALFYILNYSTKTETTMDALLNVLAPVVERIKDEAEGAPAAVTAAQLVRACSCKTVAHMPVGAPAAASKVLEYTDAKSAPDARTCPMKPLLALASASFDAL------PPAEGSNENADXXXXXXXXXXXXDYHSGAILNTSGGKIRISISLHELYLRRCLPNDTEHPYHGMCYAVWARLVRIE 3291          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14971.3524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3U9_ECTSI2.200e-30458.25ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KIB1_9PHAE3.670e-14335.96ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0L4_9PHAE2.020e-13663.25Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K8N9_9PHAE3.030e-12061.29Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KXW4_9PHAE4.800e-10249.17ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JN07_9PHAE2.730e-9531.24ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K882_9PHAE2.100e-7950.00ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5J5A5_9PHAE7.060e-6340.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT57_9PHAE9.800e-6328.37ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KTA2_9PHAE1.640e-4539.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14971contigE-fasciculatus_F_contig14971:2..3165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score651.7
Seed ortholog evalue2e-184
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size2782
Cds size1122
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14971.3524.1prot_E-fasciculatus_F_contig14971.3524.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14971 2..1123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927976.0796418-CDS-E-fasciculatus_F_contig14971:1..11231622927976.0796418-CDS-E-fasciculatus_F_contig14971:1..1123Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14971 2..1123 -
1695995774.9807239-CDS-E-fasciculatus_F_contig14971:1..11231695995774.9807239-CDS-E-fasciculatus_F_contig14971:1..1123Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14971 2..1123 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927976.0959215-UTR-E-fasciculatus_F_contig14971:1123..11251622927976.0959215-UTR-E-fasciculatus_F_contig14971:1123..1125Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14971 1124..1125 -
1695995774.9914587-UTR-E-fasciculatus_F_contig14971:1123..11251695995774.9914587-UTR-E-fasciculatus_F_contig14971:1123..1125Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14971 1124..1125 -
1622927976.1093206-UTR-E-fasciculatus_F_contig14971:1212..13471622927976.1093206-UTR-E-fasciculatus_F_contig14971:1212..1347Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14971 1213..1347 -
1695995775.0009284-UTR-E-fasciculatus_F_contig14971:1212..13471695995775.0009284-UTR-E-fasciculatus_F_contig14971:1212..1347Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14971 1213..1347 -
1622927976.1209013-UTR-E-fasciculatus_F_contig14971:1466..25241622927976.1209013-UTR-E-fasciculatus_F_contig14971:1466..2524Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14971 1467..2524 -
1695995775.0106015-UTR-E-fasciculatus_F_contig14971:1466..25241695995775.0106015-UTR-E-fasciculatus_F_contig14971:1466..2524Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14971 1467..2524 -
1622927976.1359713-UTR-E-fasciculatus_F_contig14971:2700..31651622927976.1359713-UTR-E-fasciculatus_F_contig14971:2700..3165Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14971 2701..3165 -
1695995775.020039-UTR-E-fasciculatus_F_contig14971:2700..31651695995775.020039-UTR-E-fasciculatus_F_contig14971:2700..3165Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14971 2701..3165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14971.3524.1

>prot_E-fasciculatus_F_contig14971.3524.1 ID=prot_E-fasciculatus_F_contig14971.3524.1|Name=mRNA_E-fasciculatus_F_contig14971.3524.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=374bp
MLAQKLAAAEENAKRESQNASFNASPDQQQDNSDKAEVHLCDYGDDEPGR
SVIPTSARRLETEFFVNDALRSFLAAGFSGDDSLPDTAFPLLSGRTRQQT
MEDASKITLGTEVPASTLSVARQESLLEQKSTSCASSMADVAQPVSSPSY
STGTDGGPRIQPYLIQLRDASHEGLSDQARGERGARRLATNATVFNTEVG
RTSSLPHSVAVSIAQEFGLNRKQRLAFFIFANGLLAQSRPNPPEALRIYI
GGGAGTGKSHVLKAIKAFIECQAIAAKVPRGRLLTVAYQGKQAASVGGTT
VHSVCSTGSRDGGNLSGDHDYQSSLPETKAMHWKGVSVLAIEEVSMVGCN
LLVQLHKAACSMFPLHKAKPFGNR
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mRNA from alignment at E-fasciculatus_F_contig14971:2..3165-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14971.3524.1 ID=mRNA_E-fasciculatus_F_contig14971.3524.1|Name=mRNA_E-fasciculatus_F_contig14971.3524.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3164bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14971:2..3165- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGATACGTGGGGATGACGGAGGAACAAAAGCGACTCGTACTTCACTGTCA CCTTCTCGTCTGGCTGGGTCTTCGGCTACAACGATTTTGCGAGTTTCCGA GACCTCATGGATAGGACCCCAGCGCGGTACACGGAACTTGCTCAGTACCT CGACAACATCATCTTCAACCAGGTGGCGACCCTTGCCGACATCACCCGCG TGATGCACGGCGCTGTAGAAGGTACTTCTACATTGCCCGTCGGCGACACG TGCCAAAAGGACCCAAACCATCGTCATGCCAAGGAGTGTTTGCCGACCGC GCCGCCAACCGACTGTTTCCAGCGGGACGGGGAAGATCGGTGTCCTATTC ACGACCAGGCCTACGCCCGTCTCATGTATCTCGACCTTGCCGAGATCACG CCTGGAGCTAACCTGCACAAGTGTCAGGCCACCTGCACCAAGTACAACCA TTTGAACTCCTGCAGGTGAGACATGTCACGTCTGTCAACTTGTCTCCATC ACACCTCGACCTAACTTGCACGAGTGTCAGGCCACCGTACAACCTTTTCT AACCATGAGGTCAAATTTGCATATGTCGTGCCTACAGTCGCACTTCCTTC CTGCACAACACACTTGCTTCTTTCCTCCTCTGTCCGTGCAGGTTTGGCTA TGGGGAAGAAGGGAAGCCACTTGTCGCTGAAACCGTCGTGAAACGAGGAC GATGCGTTTTCGACACGAAGGGGCAACATGACTATCGATGGAGTCGTGTT TTCCGTTCACTCAACCGACGATGCCGCCGCCGCTGCATCCACTCCAGCCT TCCAGAAAGTTTTCGATGAGTCCATTGCAACACTCATCGGGGACGACGGA CTGCCGGATCCGTTGTCCGATAGGTTCAGCGCCGATATTCGTCGTCTGCA CAACCACATCAACAGCTTCAACCCTGTCATCCAGTTTGCCATTCGGAGTA ACATGGACCTCAAGGTTTTGCTCCGGGACAGCGACGCCAAAGGAATTCTC TTCTACATCTTAAACTACAGCACCAAAACTGAGCAAACTTTGGACGTTTT GCTGCCCCTTCTTGTGCCAGTAGTGGAACGGATTCGGGACGACGCCGACG GATCGGACGACAAAGAACTTGCCGTGCGCCTTGTGAGATCTTGCCTCTGC AAACAGCTATCCAGTCTTAACATTGGCGGGCCGGCGGCTGCTAGCAAAGT GCTCGACATGCCGGACCACAAGATCTCCCACCACCCCGTGCCATGCCCAA TGTCACCATTGCTGACGTGGGCATCTTCAAGAGACGGCCCTCTGGATGCT GACACCAGTCGTCCGGACGATGAGAGCGACAGCGACACGGAAGACCCTAT GGACGGTGATGTCAGCATCACACCATTCAAAGGGAAGCTAACGGTGGCGC AACGTGCGTACTTGCTGTACCGCAATCGTTGCCGTCCTGGTGACACCGGC CACGTACTTCACGGGATGTCTTACGTCTTTTGGCACAAGCTTGTCCGCGT AGAACGGTATGACCCGCTGGACAACAAAAAACCGGACCCCCCCCAGTCTT CCGATGCGTCCGACCCTGACTCCGACTGTGACACCGTGCAGCCGGGCGAC CCTGTTAGCCCCTGCGCACGACGTGCACCTTCCCGGGCGGGGAGACGCCG CGCGTGTCGGTATGACTTCGTTGGGGAGTACAAGCACAAGTGGCAACAGG TCAGCTCCCCGACCGAGGCAGAACGCGTCGTGATAGTCATGAAGTACATC TAATAACTACTGCAACCGTCCCCTCATTTCTTGTACTAACTCGGGAGTCT TCTCCCCTCCTGCTGCAGGTTCTGCGGGAGAAACCGGCGATGGTCAACAT CATGCGAGGCATACCGCGCAAGGACACTCAACCCGTCGCGCACTGCCGTC TTCTTCTCTGCAGTTCGTTCCATTCTTTACTTTGGACAACCCCAAGGCCA CCGGTGAGAGTTGGACGGATGCCTACACACGTGTCGACACGTCAGACGCG TGGGACCCGCGTACGCATCCTTTGCGCCTCTTCGCTAAAGGGATGCTGGC TCAGAAGTTGGCCGCAGCAGAAGAGAACGCGAAACGGGAATCGCAAAATG CTTCTTTCAACGCATCACCGGATCAACAGCAGGATAACAGCGATAAAGCC GAGGTCCACTTATGTGACTACGGCGATGATGAGCCTGGCCGAAGCGTTAT CCCAACCTCTGCGCGTCGGTTGGAGACGGAATTTTTCGTTAACGATGCCT TGAGATCTTTCCTTGCGGCTGGTTTTAGCGGAGACGACTCCTTGCCGGAT ACTGCATTTCCATTGCTGAGCGGCCGGACACGCCAACAGACTATGGAAGA CGCTTCGAAAATCACCCTTGGCACCGAGGTACCGGCATCGACGCTATCCG TGGCACGGCAGGAATCCTTATTAGAGCAAAAGTCGACTTCTTGCGCGTCG TCAATGGCCGACGTCGCACAGCCTGTCTCATCACCGTCGTACTCTACCGG TACCGACGGTGGCCCGCGGATTCAGCCGTACCTTATCCAATTGAGAGATG CTTCCCACGAAGGCCTATCGGACCAAGCACGGGGAGAACGGGGCGCCAGG CGTCTAGCGACCAACGCTACTGTTTTTAACACTGAGGTCGGGCGTACTTC AAGCTTGCCACATTCTGTCGCCGTCAGTATTGCACAAGAGTTCGGCCTCA ACCGGAAGCAGAGGCTGGCCTTCTTCATCTTCGCTAACGGGCTGCTAGCT CAGAGTCGTCCCAATCCACCCGAGGCACTTCGCATATACATCGGTGGAGG GGCTGGGACGGGCAAGAGCCACGTCCTCAAGGCCATCAAAGCCTTCATCG AGTGCCAAGCAATCGCAGCAAAAGTACCGCGCGGACGATTGCTCACGGTG GCTTATCAAGGAAAGCAAGCAGCTAGTGTCGGTGGAACTACCGTTCACTC TGTCTGCTCCACGGGTAGTCGGGACGGCGGGAACCTCTCTGGCGATCATG ACTATCAGAGTTCTCTGCCAGAGACGAAGGCCATGCACTGGAAGGGTGTC TCTGTGCTTGCCATAGAAGAAGTAAGCATGGTCGGGTGCAACCTTCTCGT TCAGCTCCACAAGGCCGCGTGCTCCATGTTCCCTCTACACAAGGCTAAAC CATTCGGAAACAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14971:2..3165-

>mRNA_E-fasciculatus_F_contig14971.3524.1 ID=mRNA_E-fasciculatus_F_contig14971.3524.1|Name=mRNA_E-fasciculatus_F_contig14971.3524.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2244bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14971:2..3165- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGGCTCAGAAGTTGGCCGCAGCAGAAGAGAACGCGAAACGGGAATC
GCAAAATGCTTCTTTCAACGCATCACCGGATCAACAGCAGGATAACAGCG
ATAAAGCCGAGGTCCACTTATGTGACTACGGCGATGATGAGCCTGGCCGA
AGCGTTATCCCAACCTCTGCGCGTCGGTTGGAGACGGAATTTTTCGTTAA
CGATGCCTTGAGATCTTTCCTTGCGGCTGGTTTTAGCGGAGACGACTCCT
TGCCGGATACTGCATTTCCATTGCTGAGCGGCCGGACACGCCAACAGACT
ATGGAAGACGCTTCGAAAATCACCCTTGGCACCGAGGTACCGGCATCGAC
GCTATCCGTGGCACGGCAGGAATCCTTATTAGAGCAAAAGTCGACTTCTT
GCGCGTCGTCAATGGCCGACGTCGCACAGCCTGTCTCATCACCGTCGTAC
TCTACCGGTACCGACGGTGGCCCGCGGATTCAGCCGTACCTTATCCAATT
GAGAGATGCTTCCCACGAAGGCCTATCGGACCAAGCACGGGGAGAACGGG
GCGCCAGGCGTCTAGCGACCAACGCTACTGTTTTTAACACTGAGGTCGGG
CGTACTTCAAGCTTGCCACATTCTGTCGCCGTCAGTATTGCACAAGAGTT
CGGCCTCAACCGGAAGCAGAGGCTGGCCTTCTTCATCTTCGCTAACGGGC
TGCTAGCTCAGAGTCGTCCCAATCCACCCGAGGCACTTCGCATATACATC
GGTGGAGGGGCTGGGACGGGCAAGAGCCACGTCCTCAAGGCCATCAAAGC
CTTCATCGAGTGCCAAGCAATCGCAGCAAAAGTACCGCGCGGACGATTGC
TCACGGTGGCTTATCAAGGAAAGCAAGCAGCTAGTGTCGGTGGAACTACC
GTTCACTCTGTCTGCTCCACGGGTAGTCGGGACGGCGGGAACCTCTCTGG
CGATCATGACTATCAGAGTTCTCTGCCAGAGACGAAGGCCATGCACTGGA
AGGGTGTCTCTGTGCTTGCCATAGAAGAAGTAAGCATGGTCGGGTGCAAC
CTTCTCGTTCAGCTCCACAAGGCCGCGTGCTCCATGTTCCCTCTACACAA
GGCTAAACCATTCGGAAACAGGATGCTGGCTCAGAAGTTGGCCGCAGCAG
AAGAGAACGCGAAACGGGAATCGCAAAATGCTTCTTTCAACGCATCACCG
GATCAACAGCAGGATAACAGCGATAAAGCCGAGGTCCACTTATGTGACTA
CGGCGATGATGAGCCTGGCCGAAGCGTTATCCCAACCTCTGCGCGTCGGT
TGGAGACGGAATTTTTCGTTAACGATGCCTTGAGATCTTTCCTTGCGGCT
GGTTTTAGCGGAGACGACTCCTTGCCGGATACTGCATTTCCATTGCTGAG
CGGCCGGACACGCCAACAGACTATGGAAGACGCTTCGAAAATCACCCTTG
GCACCGAGGTACCGGCATCGACGCTATCCGTGGCACGGCAGGAATCCTTA
TTAGAGCAAAAGTCGACTTCTTGCGCGTCGTCAATGGCCGACGTCGCACA
GCCTGTCTCATCACCGTCGTACTCTACCGGTACCGACGGTGGCCCGCGGA
TTCAGCCGTACCTTATCCAATTGAGAGATGCTTCCCACGAAGGCCTATCG
GACCAAGCACGGGGAGAACGGGGCGCCAGGCGTCTAGCGACCAACGCTAC
TGTTTTTAACACTGAGGTCGGGCGTACTTCAAGCTTGCCACATTCTGTCG
CCGTCAGTATTGCACAAGAGTTCGGCCTCAACCGGAAGCAGAGGCTGGCC
TTCTTCATCTTCGCTAACGGGCTGCTAGCTCAGAGTCGTCCCAATCCACC
CGAGGCACTTCGCATATACATCGGTGGAGGGGCTGGGACGGGCAAGAGCC
ACGTCCTCAAGGCCATCAAAGCCTTCATCGAGTGCCAAGCAATCGCAGCA
AAAGTACCGCGCGGACGATTGCTCACGGTGGCTTATCAAGGAAAGCAAGC
AGCTAGTGTCGGTGGAACTACCGTTCACTCTGTCTGCTCCACGGGTAGTC
GGGACGGCGGGAACCTCTCTGGCGATCATGACTATCAGAGTTCTCTGCCA
GAGACGAAGGCCATGCACTGGAAGGGTGTCTCTGTGCTTGCCATAGAAGA
AGTAAGCATGGTCGGGTGCAACCTTCTCGTTCAGCTCCACAAGGCCGCGT
GCTCCATGTTCCCTCTACACAAGGCTAAACCATTCGGAAACAGG
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