mRNA_E-fasciculatus_F_contig1497.3523.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1497.3523.1
Unique NamemRNA_E-fasciculatus_F_contig1497.3523.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1497.3523.1 vs. uniprot
Match: D7FIL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIL5_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 6.970e-64
Identity = 171/217 (78.80%), Postives = 175/217 (80.65%), Query Frame = 1 
Query:   97 ASRWHPQQGQ--RRSSNDTPSRFVPGPAPASKHNKAPAGESWFVNASGRSVAPATGYAAAXXXXXXXXXXXXXXXGGP---GSPIITALRVQATPENILPVPMVVGSXXXXXXXXXXXXXTVPEINAKCPECQDLVKARLDEPTLMSEDRHRWEDGAFGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAASAWRLRELTRTFNVGIILCLNFG 732
            +SRWHPQ  Q  RR SN+T   FVPGPAPA KHNKAPAGESWFVNASGR VA AT  +A XXXXXXXXXXXXXXX      GSPIITALRVQATPENILPVPMVV +XXXXXXXXXX   T PEINAKCPECQDLVKARLDEPTLMSEDRHRWEDGAFG               XXXXXXXXXXXXXXX  RAASAWRLRELTRTFNVGIILCLNFG
Sbjct:   30 SSRWHPQPQQQPRRGSNET-LHFVPGPAPA-KHNKAPAGESWFVNASGRFVASATKGSAXXXXXXXXXXXXXXXXXXXXXSGSPIITALRVQATPENILPVPMVVATXXXXXXXXXX---TAPEINAKCPECQDLVKARLDEPTLMSEDRHRWEDGAFGA---GDCASETLESGXXXXXXXXXXXXXXXARRAASAWRLRELTRTFNVGIILCLNFG 238
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BLAST of mRNA_E-fasciculatus_F_contig1497.3523.1 vs. uniprot
Match: A0A6H5KBF0_9PHAE (Raptor_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF0_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.260e-61
Identity = 172/252 (68.25%), Postives = 179/252 (71.03%), Query Frame = 1 
Query:    1 MAAATNGRSSST-TIXXXXXXXXRQQRPQKPATASRWHPQQGQ-RRSSNDTPSRFVPGPAPASKHNKAPAGESWFVNASGRSVAPATGYAAAXXXXXXXXXXXXXXXGGP------GSPIITALRVQATPENILPVPMVVGSXXXXXXXXXXXXXTVPEINAKCPECQDLVKARLDEPTLMSEDRHRWEDGAFGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAASAWRLRELTRTFNVGIILCLNFG 732
            MAAA+NGRSS+T T         RQ RPQ+   +S WHPQ  Q RR SN+T   FVPGPAPA +  KAPAGESWFVNASGR VAPAT  +AAXXXXXXXXXXXXXXX         GSPIITALRVQATPE ILPVPMVV SXXXXXXXXXXX  T PEINAKCPECQDLVKARLDEPTLMSEDRHRWEDGAFG  G                             RAASAWRLRELTRTFNVGIILCLNFG
Sbjct:    1 MAAASNGRSSTTMTATATQQLQQRQHRPQE--VSSPWHPQSQQPRRGSNET-LYFVPGPAPAKQ--KAPAGESWFVNASGRFVAPATKGSAAXXXXXXXXXXXXXXXXXXXXXXXSGSPIITALRVQATPEKILPVPMVVASXXXXXXXXXXX--TAPEINAKCPECQDLVKARLDEPTLMSEDRHRWEDGAFGARGGASETLESEGGGEQAAAGSTAR-------RAASAWRLRELTRTFNVGIILCLNFG 238
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1497.3523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIL5_ECTSI6.970e-6478.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBF0_9PHAE1.260e-6168.25Raptor_N domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1497contigE-fasciculatus_F_contig1497:3334..4065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_000200.1
Exons1
Model size732
Cds size732
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927976.039321-CDS-E-fasciculatus_F_contig1497:3333..40651622927976.039321-CDS-E-fasciculatus_F_contig1497:3333..4065Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1497 3334..4065 -
1695995774.9699857-CDS-E-fasciculatus_F_contig1497:3333..40651695995774.9699857-CDS-E-fasciculatus_F_contig1497:3333..4065Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1497 3334..4065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1497.3523.1prot_E-fasciculatus_F_contig1497.3523.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1497 3334..4065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1497.3523.1

>prot_E-fasciculatus_F_contig1497.3523.1 ID=prot_E-fasciculatus_F_contig1497.3523.1|Name=mRNA_E-fasciculatus_F_contig1497.3523.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=244bp
MAAATNGRSSSTTITTLQQLHHRQQRPQKPATASRWHPQQGQRRSSNDTP
SRFVPGPAPASKHNKAPAGESWFVNASGRSVAPATGYAAAAASSAAGNGP
AAGAAGGPGSPIITALRVQATPENILPVPMVVGSSSSGGGGGCGGGGTVP
EINAKCPECQDLVKARLDEPTLMSEDRHRWEDGAFGGEGGGASETLLESG
AGGRQEAAAAAAAGSTARRAASAWRLRELTRTFNVGIILCLNFG
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mRNA from alignment at E-fasciculatus_F_contig1497:3334..4065-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1497.3523.1 ID=mRNA_E-fasciculatus_F_contig1497.3523.1|Name=mRNA_E-fasciculatus_F_contig1497.3523.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=732bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1497:3334..4065- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGCCGCCACCAACGGCCGGAGCAGCAGCACCACCATCACGACACT
GCAGCAGCTACACCACCGCCAACAGCGCCCGCAGAAACCGGCAACAGCAA
GTCGGTGGCACCCGCAACAAGGACAGCGCCGCAGCAGCAACGACACTCCT
AGTCGCTTTGTCCCAGGGCCCGCGCCGGCTTCGAAGCACAACAAGGCCCC
AGCGGGAGAGAGCTGGTTCGTGAACGCTTCCGGCAGATCCGTCGCTCCCG
CCACGGGCTACGCCGCCGCCGCCGCCAGCAGCGCAGCGGGGAACGGGCCG
GCGGCGGGGGCGGCGGGAGGCCCCGGATCGCCGATCATCACGGCCCTGCG
GGTGCAAGCCACCCCGGAGAATATACTACCCGTGCCTATGGTGGTGGGCA
GCAGCAGCAGCGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCACTGTCCCG
GAGATCAACGCCAAGTGCCCAGAGTGCCAGGATCTTGTCAAGGCGAGGCT
GGACGAGCCGACGCTCATGAGCGAGGACCGGCATCGGTGGGAGGACGGCG
CGTTCGGGGGAGAGGGGGGCGGTGCGAGCGAGACGCTGCTGGAGAGCGGG
GCAGGCGGGCGACAGGAGGCGGCGGCGGCCGCGGCGGCAGGCAGCACCGC
GAGGAGGGCGGCATCTGCTTGGAGGCTGCGGGAGCTAACGAGGACCTTTA
ACGTGGGGATCATCCTGTGCCTCAACTTCGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1497:3334..4065-

>mRNA_E-fasciculatus_F_contig1497.3523.1 ID=mRNA_E-fasciculatus_F_contig1497.3523.1|Name=mRNA_E-fasciculatus_F_contig1497.3523.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1497:3334..4065- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGCCGCCACCAACGGCCGGAGCAGCAGCACCACCATCACGACACT
GCAGCAGCTACACCACCGCCAACAGCGCCCGCAGAAACCGGCAACAGCAA
GTCGGTGGCACCCGCAACAAGGACAGCGCCGCAGCAGCAACGACACTCCT
AGTCGCTTTGTCCCAGGGCCCGCGCCGGCTTCGAAGCACAACAAGGCCCC
AGCGGGAGAGAGCTGGTTCGTGAACGCTTCCGGCAGATCCGTCGCTCCCG
CCACGGGCTACGCCGCCGCCGCCGCCAGCAGCGCAGCGGGGAACGGGCCG
GCGGCGGGGGCGGCGGGAGGCCCCGGATCGCCGATCATCACGGCCCTGCG
GGTGCAAGCCACCCCGGAGAATATACTACCCGTGCCTATGGTGGTGGGCA
GCAGCAGCAGCGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCACTGTCCCG
GAGATCAACGCCAAGTGCCCAGAGTGCCAGGATCTTGTCAAGGCGAGGCT
GGACGAGCCGACGCTCATGAGCGAGGACCGGCATCGGTGGGAGGACGGCG
CGTTCGGGGGAGAGGGGGGCGGTGCGAGCGAGACGCTGCTGGAGAGCGGG
GCAGGCGGGCGACAGGAGGCGGCGGCGGCCGCGGCGGCAGGCAGCACCGC
GAGGAGGGCGGCATCTGCTTGGAGGCTGCGGGAGCTAACGAGGACCTTTA
ACGTGGGGATCATCCTGTGCCTCAACTTCGGTATGGCCGCCGCCACCAAC
GGCCGGAGCAGCAGCACCACCATCACGACACTGCAGCAGCTACACCACCG
CCAACAGCGCCCGCAGAAACCGGCAACAGCAAGTCGGTGGCACCCGCAAC
AAGGACAGCGCCGCAGCAGCAACGACACTCCTAGTCGCTTTGTCCCAGGG
CCCGCGCCGGCTTCGAAGCACAACAAGGCCCCAGCGGGAGAGAGCTGGTT
CGTGAACGCTTCCGGCAGATCCGTCGCTCCCGCCACGGGCTACGCCGCCG
CCGCCGCCAGCAGCGCAGCGGGGAACGGGCCGGCGGCGGGGGCGGCGGGA
GGCCCCGGATCGCCGATCATCACGGCCCTGCGGGTGCAAGCCACCCCGGA
GAATATACTACCCGTGCCTATGGTGGTGGGCAGCAGCAGCAGCGGCGGCG
GCGGCGGCTGCGGCGGCGGCGGCACTGTCCCGGAGATCAACGCCAAGTGC
CCAGAGTGCCAGGATCTTGTCAAGGCGAGGCTGGACGAGCCGACGCTCAT
GAGCGAGGACCGGCATCGGTGGGAGGACGGCGCGTTCGGGGGAGAGGGGG
GCGGTGCGAGCGAGACGCTGCTGGAGAGCGGGGCAGGCGGGCGACAGGAG
GCGGCGGCGGCCGCGGCGGCAGGCAGCACCGCGAGGAGGGCGGCATCTGC
TTGGAGGCTGCGGGAGCTAACGAGGACCTTTAACGTGGGGATCATCCTGT
GCCTCAACTTCGGT
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