mRNA_E-fasciculatus_F_contig14969.3522.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14969.3522.1
Unique NamemRNA_E-fasciculatus_F_contig14969.3522.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14969.3522.1 vs. uniprot
Match: A0A836CK79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK79_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.870e-9
Identity = 50/150 (33.33%), Postives = 73/150 (48.67%), Query Frame = 2 
Query:    8 NATVQALSMLMGLPCGGDLGDGHLLSNRIFTTLQGEYTEVPTKSHYDTFHPGLVKFRQGLLAGGVKVFVEVTSSNLRSLEEAL--RDGSTEPLPRHELLHVNGTRLELLVP-----PRGGAVLVVLPHEHLSHVLWSQLNEPGRLQLLLG 436
            NA V  L  L+G   G  L +  LLSN   TT+ G+Y   P  + +  F      F +   A GV+ FV + + N  ++ +AL  R  +   L  H     N +RL L++        G   L+++PHEH+SHV+W  L+   RL LL G
Sbjct:  156 NAAVIVLQQLLG--GGVPLHEAALLSNMTPTTVPGDYIMCPKDADFALFAQPYADFLREQYAHGVRAFVCIGTRNEAAVLDALCPRGHTAVCLAEH-----NNSRLLLVLGVGENGSDGRQFLLLVPHEHMSHVMWQALSRSSRLWLLAG 298
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14969.3522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CK79_9STRA2.870e-933.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14969contigE-fasciculatus_F_contig14969:2..824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size457
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14969.3522.1prot_E-fasciculatus_F_contig14969.3522.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14969 2..793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927975.964719-CDS-E-fasciculatus_F_contig14969:1..2531622927975.964719-CDS-E-fasciculatus_F_contig14969:1..253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14969 2..253 -
1695995774.937909-CDS-E-fasciculatus_F_contig14969:1..2531695995774.937909-CDS-E-fasciculatus_F_contig14969:1..253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14969 2..253 -
1622927975.9798331-CDS-E-fasciculatus_F_contig14969:619..7931622927975.9798331-CDS-E-fasciculatus_F_contig14969:619..793Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14969 620..793 -
1695995774.94636-CDS-E-fasciculatus_F_contig14969:619..7931695995774.94636-CDS-E-fasciculatus_F_contig14969:619..793Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14969 620..793 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927975.9944-UTR-E-fasciculatus_F_contig14969:793..8241622927975.9944-UTR-E-fasciculatus_F_contig14969:793..824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14969 794..824 -
1695995774.957281-UTR-E-fasciculatus_F_contig14969:793..8241695995774.957281-UTR-E-fasciculatus_F_contig14969:793..824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14969 794..824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14969.3522.1

>prot_E-fasciculatus_F_contig14969.3522.1 ID=prot_E-fasciculatus_F_contig14969.3522.1|Name=mRNA_E-fasciculatus_F_contig14969.3522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=142bp
MLMGLPCGGDLGDGHLLSNRIFTTLQGEYTEVPTKSHYDTFHPGLVKFRQ
GLLAGGVKVFVEVTSSNLRSLEEALRDGSTEPLPRHELLHVNGTRLELLV
PPRGGAVLVVLPHEHLSHVLWSQLNEPGRLQLLLGFHAVLGV
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mRNA from alignment at E-fasciculatus_F_contig14969:2..824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14969.3522.1 ID=mRNA_E-fasciculatus_F_contig14969.3522.1|Name=mRNA_E-fasciculatus_F_contig14969.3522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=823bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14969:2..824- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAAGGCAACGCCACAGTTCAGGCGCTTTCGATGCTGATGGGCCTCCCGT
GCGGCGGTGATCTCGGAGACGGCCACCTACTGTCCAACCGCATCTTTACG
ACCCTCCAAGGGGAGTACACCGAGGTCCCCACCAAAAGTCACTACGATAC
GTTCCACCCGGGGCTCGTCAAGTTCCGACAAGGCCTTCTGGCCGGCGGTG
TCAAGGTGCTCATGTGTTCTTGAGGGAGTTATGTTCAGAGTCTAAAGTTT
ATCGCGGTCGTACGATTTTGATGAAGTGAACCTATGCGTGCATCAATGCT
GGTGCACGTCCCAACATCTTGGCACGTCGTGAAAGTACGTAACTCGGTAT
ATTTGCGAACGCCTCCTTGCCAAGCATGACACCGGCGGGACGCTACGGGA
CATACTGGTTGCAGAAGCTGGGTAGCTGCACTGTGAGCAAGATCTTTGGG
GTGGTAGCAGACGGTAAATCCAGAAACTCTGGAACACGGCTGCTGGGCGA
GCTGAAACGGGTGTTGCGTTGACCAGCTGTCCGTCTCCGCGCGCTTCTCT
TCATCTTGTGCGTATTAACAGGTGTTCGTAGAGGTCACCAGCTCCAACCT
CAGGTCGCTGGAAGAAGCCCTGCGCGACGGCTCCACCGAGCCGCTCCCGC
GGCACGAGCTGCTTCACGTGAACGGCACCCGCCTTGAGCTCCTCGTCCCA
CCCCGGGGGGGTGCTGTCCTAGTCGTCCTCCCCCACGAGCACCTGAGCCA
TGTCTTGTGGAGTCAGCTGAACGAGCCGGGACGGCTGCAGCTTCTGCTGG
GGTTCCACGCCGTCCTCGGTGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14969:2..824-

>mRNA_E-fasciculatus_F_contig14969.3522.1 ID=mRNA_E-fasciculatus_F_contig14969.3522.1|Name=mRNA_E-fasciculatus_F_contig14969.3522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14969:2..824- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGATGGGCCTCCCGTGCGGCGGTGATCTCGGAGACGGCCACCTACT
GTCCAACCGCATCTTTACGACCCTCCAAGGGGAGTACACCGAGGTCCCCA
CCAAAAGTCACTACGATACGTTCCACCCGGGGCTCGTCAAGTTCCGACAA
GGCCTTCTGGCCGGCGGTGTCAAGATGCTGATGGGCCTCCCGTGCGGCGG
TGATCTCGGAGACGGCCACCTACTGTCCAACCGCATCTTTACGACCCTCC
AAGGGGAGTACACCGAGGTCCCCACCAAAAGTCACTACGATACGTTCCAC
CCGGGGCTCGTCAAGTTCCGACAAGGCCTTCTGGCCGGCGGTGTCAAGGT
GTTCGTAGAGGTCACCAGCTCCAACCTCAGGTCGCTGGAAGAAGCCCTGC
GCGACGGCTCCACCGAGCCGCTCCCGCGGCACGAGCTGCTTCACGTGAAC
GGCACCCGCCTTGAGCTCCTCGTCCCACCCCGGGGGGGTGCTGTCCTAGT
CGTCCTCCCCCACGAGCACCTGAGCCATGTCTTGTGGAGTCAGCTGAACG
AGCCGGGACGGCTGCAGCTTCTGCTGGGGTTCCACGCCGTCCTCGGTGTG
GTGTTCGTAGAGGTCACCAGCTCCAACCTCAGGTCGCTGGAAGAAGCCCT
GCGCGACGGCTCCACCGAGCCGCTCCCGCGGCACGAGCTGCTTCACGTGA
ACGGCACCCGCCTTGAGCTCCTCGTCCCACCCCGGGGGGGTGCTGTCCTA
GTCGTCCTCCCCCACGAGCACCTGAGCCATGTCTTGTGGAGTCAGCTGAA
CGAGCCGGGACGGCTGCAGCTTCTGCTGGGGTTCCACGCCGTCCTCGGTG
TG
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