mRNA_E-fasciculatus_F_contig1496.3521.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1496.3521.1
Unique NamemRNA_E-fasciculatus_F_contig1496.3521.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Match: D8LP29_ECTSI (Glycosyltransferase, family GT49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP29_ECTSI)

HSP 1 Score: 439 bits (1128), Expect = 2.190e-148
Identity = 209/217 (96.31%), Postives = 212/217 (97.70%), Query Frame = 1 
Query:    1 RVEDARSAIVFSAFSRRRFCEEEDCLQYANDVPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQGKGNKLMDQTFETFMDELRAEKGPEEDTVTSLCQKDRPHAGHKKISQFRKRGD*PRF 651
            RVEDARSAIVFSAFSRRRFCEEEDCLQYANDVPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRT+EHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQGKGNKLMDQTFETFMDELRAEKGPEEDT+TSLCQKDRP  G KKISQFRKRGD P+ 
Sbjct:   64 RVEDARSAIVFSAFSRRRFCEEEDCLQYANDVPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTMEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQGKGNKLMDQTFETFMDELRAEKGPEEDTITSLCQKDRPRTGQKKISQFRKRGDSPKL 280
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BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Match: A0A7S4D647_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D647_HETAK)

HSP 1 Score: 152 bits (383), Expect = 3.090e-36
Identity = 81/193 (41.97%), Postives = 114/193 (59.07%), Query Frame = 1 
Query:    4 VEDARSAIVFSAFSRRRFC-EEEDCLQYANDVPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQGKGNKLMDQTFETFMDELRAEKGPEEDTVTSLC 579
            +E A++AIV  AF+ R  C  +E C +   +VP T  +L  CL T  C  FD  N +G  T     W+       + +L  I CFKS+R+EPY ++RK  +LP +DERF+GYGKNKIQ + HLRY+G++F V+  +FV+HAPHPKS ++ +WEK+   K       MD  F  F+  L+ E     + VT LC
Sbjct:  284 LESAKNAIVVPAFTLRSECGSQEVCSKRLKEVPATSLELSKCLGTRKCWIFDYHNPAGHSTTDYNKWQKQ----EESSLREISCFKSNRYEPYFILRKHPVLPLYDERFVGYGKNKIQHVLHLRYAGYTFRVLGKHFVVHAPHPKSNSRRAWEKSNHRKN------MDGLFAKFLHRLQEESN---NVVTHLC 463
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BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Match: A0A7S2UWU4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWU4_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.090e-34
Identity = 79/191 (41.36%), Postives = 110/191 (57.59%), Query Frame = 1 
Query:   10 DARSAIVFSAFSRRRFC-EEEDCLQYANDVPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQGKGNKLMDQTFETFMDELRAEKGPEEDTVTSLC 579
            D  +A+V  AF+ R+ C  ++ C Q +  VP+ +  LK C     C  FD  N  G G+     W        Q  L  I CF+S+R+EPY+V++K+  LP FDERF+GYGKNKIQ + HLRYSG+ FYV+P +F+IH+PHPKS A+  W+ T   +Q      MD  F+ F   L+  KG   +  T +C
Sbjct:  234 DPLNAMVVPAFTYRQECGSKQVCGQLSRQVPDDLTTLKNCFAMKRCNIFDHQNPRGHGSTGYKEWNYQ----EQTELREIPCFRSNRYEPYVVLKKSGGLPLFDERFVGYGKNKIQHVVHLRYSGYRFYVVPGSFIIHSPHPKSYARRKWQYTDKRQQ------MDYLFKMF---LKKVKGLGLEVHTPVC 411
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BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Match: A0A7S3K145_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K145_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.260e-28
Identity = 75/188 (39.89%), Postives = 101/188 (53.72%), Query Frame = 1 
Query:   70 DCLQYANDVPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTG-------------GGKQGKGNKLMDQTFETFMDELRAEKGP--EEDTVTSLCQKD 588
            +C + A  +P +   LK C+    C  FD  NQ G GT     W   LRQ + + L HI CF S+R+EPY+V+ K+ LLP F+E+F GYGKNKIQ + HLRY+GF F V+P +F++H PH KS A+ +WE+                  Q      MD+ +  F+D L A  G   E    T LC  D
Sbjct:  313 ECYREAERMPTSFQRLKQCIIQKECHIFDRYNQDGHGTTDYRAW---LRQDSSQ-LRHIQCFLSNRYEPYVVLHKSPLLPAFEEKFTGYGKNKIQNLVHLRYAGFHFSVLPKSFLVHFPHHKSAARMAWEQKSTTNPXXXXXXXXXXXNQAAHRATMDRLYRRFLDTLIAVYGSPGERPETTKLCGPD 496
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BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Match: A0A7S4A3V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V8_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.100e-28
Identity = 77/218 (35.32%), Postives = 109/218 (50.00%), Query Frame = 1 
Query:   10 DARSAIVFSAFSR--RRFCEEED--------------CLQYANDVPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQGKGNKLMDQTFETFMDELRAEKGPEEDTVTSLCQKDRPHAGHKKI 615
            D R AIV +AF+R  +  C                  C + A+ +P++   LK C+    C  FD  N  G GT     W         ++L+ + CF S+R+EPY+V+RK+ LLP ++ERF GYGKNKI+ I HLRY+G+ F V+  +F+ H PH KS A+  WE+T           MD  +  F+ +L    G       +   KD  HA H KI
Sbjct:  260 DPRQAIVIAAFAREVKTDCASSTAKAQRDKYRVDLKLCHREADQIPDSFETLKKCIMAKDCHIFDRYNHDGHGTTDYRSWLHGF--DGGKSLKPVSCFGSNRYEPYVVLRKSPLLPMYEERFTGYGKNKIEQIVHLRYAGWRFQVLGRSFLTHFPHHKSAARVEWEETQDADGNTHRDRMDHLYREFLAQLMYAYG-------APGSKDEAHARHTKI 468
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BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Match: A0A7S1U758_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U758_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.940e-28
Identity = 72/178 (40.45%), Postives = 94/178 (52.81%), Query Frame = 1 
Query:   10 DARSAIVFSAFSRRRFCEE-EDCLQ-YANDVPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQGKGNKLMDQTFETFMDELR 537
            D R   V  AF  +  C+   +C+  Y   +P     L+          FD        T Y  +++         TL ++ C  S+R+EPYL+VRKT  LP FDERF GYGKNKIQWI HLRY G++F V+P  +V H PHPKS A+  WE     K     K MDQ F+ F+DEL+
Sbjct:  214 DIRMGFVVPAFQLKGDCDGMRECITAYEQKIPSDKDSLRTMFIDREIHIFDEPYHGHSSTNYKLWFKQ-----RPMTLRYVQCLDSNRYEPYLIVRKTQYLPLFDERFTGYGKNKIQWILHLRYLGWAFTVLPDVYVTHLPHPKSKARKHWEDAN--KPDNHRKRMDQMFKGFLDELQ 384
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BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Match: A0A7S0Q5D9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5D9_9EUKA)

HSP 1 Score: 117 bits (292), Expect = 1.490e-26
Identity = 59/128 (46.09%), Postives = 75/128 (58.59%), Query Frame = 1 
Query:   85 ANDVPETIADLKPCLETNT---CGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWE 459
            A  +PE+   L+ C        C  F +   +   T Y  +WR+  R         I CF S R+EPYLV+  +   P FDERFLGYGKNKIQWI HLR +GFSFYV+P  FVIH PHP+S ++ +WE
Sbjct:   31 AKALPESFQQLRECFRVAKPAKCRVFKSNTDTHYTTNYDKWWRAPERY-------RIQCFHSLRYEPYLVLPNSNSTPSFDERFLGYGKNKIQWIQHLRLTGFSFYVLPQAFVIHCPHPESASRQNWE 151
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BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Match: A0A7S0J5T3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5T3_9EUKA)

HSP 1 Score: 119 bits (299), Expect = 3.090e-25
Identity = 59/127 (46.46%), Postives = 75/127 (59.06%), Query Frame = 1 
Query:   85 ANDVPETIADLKPCLETNT---CGRFDAANQSGQGTAYVYYWRSMLRQPNQRTLEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSW 456
            A ++PET   L+ C        C  F ++  +   T+Y  +WR+  R         I CF S R+EPYLV+      P FDERFLGYGKNKIQWI HLR SGFSF+V+P  FVIH PHP S ++ +W
Sbjct:  296 AKELPETFGQLRECFRVGKPPRCRIFKSSTDTHLSTSYDRWWRASERY-------RISCFHSLRYEPYLVLPSRNSTPMFDERFLGYGKNKIQWIQHLRLSGFSFHVLPQAFVIHCPHPTSASRQNW 415
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BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Match: A0A7S1GLD3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GLD3_CYCTE)

HSP 1 Score: 111 bits (278), Expect = 2.800e-23
Identity = 70/208 (33.65%), Postives = 106/208 (50.96%), Query Frame = 1 
Query:    4 VEDARSAIVFSAFSRRRFCE--EEDCLQYAND-----VPETIADLKPCLETNTCGRFDAANQSGQGTAYVYYWRSMLRQ------------------PNQRTLEHILCFKSHRFEPYLVVR------KTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQGKGNKLMDQTFETFMDEL 534
            VED R AIV  AF RR  C     DC  ++ +     +P+T+ +LK C+    CG F A       T +  +W +M R+                    Q+ ++ + CF S R+EPY+VVR         + P +DERF GYGKNKI+ ++HLR+ G+ F ++P  F++H PH +S AK SW       + K +  MD+ +  F+ E+
Sbjct:   86 VED-RDAIVVPAFERRSNCTVGATDCGHHSIETNSSYLPKTLEELKACIANKDCGVFQAL------TNWEGHWSTMSREWLNGDWYQDGEEIKVADGTFQKPIKQLDCFHSLRYEPYVVVRWCPENGTVPVAPYYDERFYGYGKNKIEMVSHLRFMGYKFSILPEGFIVHNPHSESEAKRSWNNVN---EHKLHADMDKLYTQFLREM 283
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BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Match: A0A7R9UEH2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEH2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.780e-23
Identity = 52/97 (53.61%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:  244 ILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQWINHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQGKGNKLMDQTFETFMDEL 534
            I C  + R+EPY++VRK+ LLP FDERF GYGKNKIQWI HLRY GF F V+P  F+ H PHP S +K SW+   G +Q      MD+ +  F++EL
Sbjct:    3 IECLSTLRYEPYVIVRKSDLLPSFDERFTGYGKNKIQWIVHLRYLGFKFMVLPQVFLTHFPHPPSDSKNSWDS--GHRQ-----RMDKLYLDFLEEL 92
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1496.3521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP29_ECTSI2.190e-14896.31Glycosyltransferase, family GT49 n=1 Tax=Ectocarpu... [more]
A0A7S4D647_HETAK3.090e-3641.97Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWU4_9STRA2.090e-3441.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3K145_9STRA1.260e-2839.89Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4A3V8_9STRA2.100e-2835.32Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1U758_9STRA4.940e-2840.45Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0Q5D9_9EUKA1.490e-2646.09Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0J5T3_9EUKA3.090e-2546.46Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S1GLD3_CYCTE2.800e-2333.65Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7R9UEH2_9STRA4.780e-2353.61Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1496contigE-fasciculatus_F_contig1496:11803..17444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.4
Seed ortholog evalue1.4e-77
Seed eggNOG ortholog2880.D8LP29
KEGG koko:K09668
KEGG Pathwayko00515,ko01100,map00515,map01100
EggNOG free text desc.protein O-linked glycosylation
EggNOG OGsKOG3765@1,KOG3765@2759
COG Functional cat.A
CAZyGT49,GT8
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons7
Model size1861
Cds size435
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927975.7028098-UTR-E-fasciculatus_F_contig1496:11802..124641622927975.7028098-UTR-E-fasciculatus_F_contig1496:11802..12464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1496 11803..12464 -
1695995774.847907-UTR-E-fasciculatus_F_contig1496:11802..124641695995774.847907-UTR-E-fasciculatus_F_contig1496:11802..12464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1496 11803..12464 -
1622927975.7755535-UTR-E-fasciculatus_F_contig1496:12539..130961622927975.7755535-UTR-E-fasciculatus_F_contig1496:12539..13096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1496 12540..13096 -
1695995774.8604796-UTR-E-fasciculatus_F_contig1496:12539..130961695995774.8604796-UTR-E-fasciculatus_F_contig1496:12539..13096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1496 12540..13096 -
1622927975.9048846-UTR-E-fasciculatus_F_contig1496:16590..167161622927975.9048846-UTR-E-fasciculatus_F_contig1496:16590..16716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1496 16591..16716 -
1695995774.9178169-UTR-E-fasciculatus_F_contig1496:16590..167161695995774.9178169-UTR-E-fasciculatus_F_contig1496:16590..16716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1496 16591..16716 -
1622927975.9167829-UTR-E-fasciculatus_F_contig1496:17363..174441622927975.9167829-UTR-E-fasciculatus_F_contig1496:17363..17444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1496 17364..17444 -
1695995774.9289184-UTR-E-fasciculatus_F_contig1496:17363..174441695995774.9289184-UTR-E-fasciculatus_F_contig1496:17363..17444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1496 17364..17444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927975.818025-CDS-E-fasciculatus_F_contig1496:13096..131351622927975.818025-CDS-E-fasciculatus_F_contig1496:13096..13135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1496 13097..13135 -
1695995774.8704119-CDS-E-fasciculatus_F_contig1496:13096..131351695995774.8704119-CDS-E-fasciculatus_F_contig1496:13096..13135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1496 13097..13135 -
1622927975.8390734-CDS-E-fasciculatus_F_contig1496:13673..137961622927975.8390734-CDS-E-fasciculatus_F_contig1496:13673..13796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1496 13674..13796 -
1695995774.879321-CDS-E-fasciculatus_F_contig1496:13673..137961695995774.879321-CDS-E-fasciculatus_F_contig1496:13673..13796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1496 13674..13796 -
1622927975.8581982-CDS-E-fasciculatus_F_contig1496:15003..151271622927975.8581982-CDS-E-fasciculatus_F_contig1496:15003..15127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1496 15004..15127 -
1695995774.8886538-CDS-E-fasciculatus_F_contig1496:15003..151271695995774.8886538-CDS-E-fasciculatus_F_contig1496:15003..15127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1496 15004..15127 -
1622927975.874277-CDS-E-fasciculatus_F_contig1496:15755..158451622927975.874277-CDS-E-fasciculatus_F_contig1496:15755..15845Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1496 15756..15845 -
1695995774.899901-CDS-E-fasciculatus_F_contig1496:15755..158451695995774.899901-CDS-E-fasciculatus_F_contig1496:15755..15845Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1496 15756..15845 -
1622927975.8890874-CDS-E-fasciculatus_F_contig1496:16531..165901622927975.8890874-CDS-E-fasciculatus_F_contig1496:16531..16590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1496 16532..16590 -
1695995774.9081202-CDS-E-fasciculatus_F_contig1496:16531..165901695995774.9081202-CDS-E-fasciculatus_F_contig1496:16531..16590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1496 16532..16590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1496.3521.1prot_E-fasciculatus_F_contig1496.3521.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1496 13097..16590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1496.3521.1

>prot_E-fasciculatus_F_contig1496.3521.1 ID=prot_E-fasciculatus_F_contig1496.3521.1|Name=mRNA_E-fasciculatus_F_contig1496.3521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=145bp
MLRQPNQRTLEHILCFKSHRFEPYLVVRKTALLPKFDERFLGYGKNKIQW
INHLRYSGFSFYVMPVNFVIHAPHPKSVAKTSWEKTGGGKQGKGNKLMDQ
TFETFMDELRAEKGPEEDTVTSLCQKDRPHAGHKKISQFRKRGD*
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mRNA from alignment at E-fasciculatus_F_contig1496:11803..17444-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1496.3521.1 ID=mRNA_E-fasciculatus_F_contig1496.3521.1|Name=mRNA_E-fasciculatus_F_contig1496.3521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1496:11803..17444- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGTCGAGGATGCTCGCAGCGCGATAGTGTTTTCGGCGTTTAGCCGGCG
ACGCTTTTGCGAGGAGGAGGATTGCTTGCAGGTAAACAACACACACACGC
ACACAATGAATGATGAAGGGATGTAGAGCACGTAGTGAGTCTCTTTTTTG
CCCGCTTGTTGCTTGGCTGGCGCCATGGGTTGCTTGATCTACTCTAGTTC
TCCAGTCTCTTGCCCGAGATGTGTGTTGTGGTATGCATACAAAATAGGGT
AAGGTGGTTGCCGTGAGGTTTGGCGGGTGACGACTTACATTGCACTTTCT
GGTGCCATTTGGCGGCTGCTTGATGAGTTGCACTTCTCAAGCGTGTAGTG
TATTCGCTAGAATGTCGTTTTTGTGTACATGGAGCGGTGGTTACAAGGGG
GATGCTGTACTATTACTGTAGTGTTAGCTGGCTGTGGTCCGAAGTCCGTC
CTACGTTATAGCTCTTGGAAGTGTGTGTAGCCTCTCGTGTGCTCAAAAAT
GATCCTTCGTTTCGAGCATGTTTCATGCCCTCCCCCCCCACTCCCCATCT
CTCCTGTCGCGCCGCTGCCGTCCGTGCTGCCTTTCTTTCTGTTCTGCTTC
CGTCGTGTCTCTCTCCCTGATGGGCATGCGGTACTGCTGTGCATACCAAA
AACAACTATCTTGTCGATCGTTTCCGGGAAACGGCCGAACGAACGAACGA
ACGAACGGCCGGACTTTGTAACAAACAGTACGCGAATGACGTTCCCGAAA
CGATCGCGGACCTGAAGCCGTGTCTGGAGACCAACACGTGCGGGAGGTTC
GACGCGGCGAATCAGTCGGGGCAAGGCACGGCGTACGTCTACTACTGGCG
AAGCATGCTGCGACAACCGAACCAGCGAACTCTGGAACACATCTTGTGTT
TCAAGTCGCACAGGTGAGATTGGGGGGGGGGGTGAATGCACGCTCATATT
TTTATTAGTCGTGTACTTTTTTTGCTGCTATATTTTTTGTTTTGTTTTTC
TCCTGTTTTCGTTCGGGGGTGTATGTTGGGTCGAGAGAGGGGGCGGGTGA
AAATGAGGCCGGCCGTGAATGACTTGGCGCCCTCGTCGTGTAGTCACAAG
GAGGACGGCGTGTCTTTCCGCGACGCTTTTATTTTACTCGTACCTTGTTC
TCTTTTTTTTGTGGCACTCACACGCGCGCCCGGCTCCGTTCTCACCCCAG
TCTGGCGTAGCTCGTTTGCTCAAAGTGTCTCTTTGAGGGCTGCAGACACT
AACCCGCCGTTTATTAGCCTTGGTGGGGGGGGTTCGGAAATGCTCGTGCG
GCAACAAGTGTTTCCGAACCGATTTGTCTGTTGTGTTAAACGGCACGCGG
ACCGTCGGTCGTCTCCCTTTGCTTCTTGTACTATTAATATTTATACACGT
CGCTGTCGATTATGGTAATGTCGCTGTCGAATGTGGCGTTGTACGTGGTA
GCCTCGGTCGCGACTGGAGAACGTAAACAATACTGCTGTACTTGGTCTTG
CCAACAGCAAAAGGATGGTACAGGTCATTTGACAACCCATGAGGTTGAAT
CATTTTGTCCATTGTCCAACGAAGATGATTTGGCTTTTTTTTTTGGCAGG
TTTGAGCCCTACCTCGTGGTGCGAAAGACGGCCTTGCTGCCCAAGTTCGA
CGAGCGATTCTTGGGGTATGGCAAGAACAAGATCCAATGGTGAGACAGAG
ACAGAGACAGACAGGCAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC
GGAGGGAGAGGTTGTTCCCCCGCTTTTTGTTTCCTTCGATAACAGTCACC
TGCTGTTGCGTACCACGCTGAAGGCAAGGGACACCCTGAAAACCCTGCCC
TTTTTTCTCTCGCCGGTGGAGATGGAAGGCGTGCACCGACGATAGTATTC
TTCTGCCTGGACCCCTGGTCTTCAGCTTTGTGCAAGTAAACAGGCAAAGA
CGAGCCGCGTGGTAGTAGGGAAAGCTGTTGCAAGCGGAGGTTCATGGAAT
GGGCGAAAACAAATGTTTTTTGCTGGAGGCTTTTTTGTGGCAGGGAGGGC
GCGTGTTGTGTGGGCGCCTTTCCGTGTTCACTCCTTGTCCGTCGGTCCTC
GCGTCTCCTGTTTGCAAGTCGGTCTAATCGTGTGGCACACACACTCACCG
GTCACAACCCCCCACTCCCCGTCTTGTCCACCCTGGCATTGTCAATCCCA
CCACACAAGCCCGCCAGCCCTGCCATGCCTACCGACCAACCCCCCACTCG
TACGCATGTTATGGCGATACATTGATTTTTGTTCTTCTTTATGACGTATT
TTCTTATTTTCTTCCAGGATCAACCATCTTCGATACAGCGGGTTCTCGTT
TTATGTGATGCCGGTCAACTTCGTCATCCACGCGCCGCATCCCAAGTCTG
TCGCGAAGACCTCGTGGGAAAAGACCGGGGGCGGCAAGCAGGTGTGTGTG
TGTTTTTGTTACAATACTCAACACTGACCGCGCTAACCGGCTGACCAATG
AAAAGGCGCCAGTCCCTAGTGCGCTGGAAACACACAAAAAATGCTTCTAC
AGTCCACAATCTGGGACCCTGTGACCGAGTGTCATGGGGGAGTCTTCGCG
ACTCTCCGGATGAAAGTGTTTGTGTGTGTGTTTTTGTTACAATACTCGAC
ATTGCCGCGCTAACCGGCTGACCAATGAAAGCGTATCAGTCTTGTACCGG
GATAAAAAACGCTAACACGAACACGCTTTCTAGACAACGGGTTTATGTGT
GTAGTGGCGGTTGGCCAAAACAAACAAGAGTCCCTGGTTGGCTGTCTGGG
CAGGGGTGGTGGGCGAGTTTATACAACAATTGCGCGGTGGGGTACAACGA
AAAAACGGCGAGAAACTTGGCGTGCGGGCGGGTGTTCGTGCGCTGTGTGC
ACGCGCCTGTGTGCCCCTCCCAAGGCAGTTAGCATCGTCAGGCTCGCGTG
GCCCGTAAACAAATGTGCATGAAGGTGAACGTGTGTGTTCGTCTTGACTT
TGTTCGCGCTTGACGGCGCTACAACCCGCTGGTCAATGAGAAGACCGCCA
GTCTAAAAATGGAAAACGCCTTCTTCGGCGTGTGAGAAATGTTGTCATTG
GTTGGCATCAATCGCGGCAACTGGCTCATGTATGAGGAGACGTCGGTGAG
TCTGGTTGCGTGGGGCGGGAGAGAGCATGCACGTTGCGGAAATACAAATT
ACCGCCGCGGTTATGGCTGCAGGAACTCGCTCTCGAGGCCCTTACGGGGC
ACTTGTCATGTGGATGATGATGTACTGACGGATGTCTTTTTTTCGGTCGG
CCGAACAAGGCCACCGATTTTTTCGCCCCTAAAAACCCCCCAAAAAAATC
ATTTTATATACGAAACACCCCAGATACTCCGTAAGATTTTGATAAACACA
CGCACACGCGCGCTCGTGCGCTTTATTCAATCTGTTTTGAACGACGCTGG
CGTTCTTGTCATCCGCTTATCGCGGTCGATGCTGTAGCAGTGTTGGGAAA
AACACACACACGCCGACACCGGCATTGCTTCTGGCTTTGACGGGATGCAC
GCGGTAAAAGACGAAACGACTTGGTGCACATGGCAACAAGTGAAGTGAAT
GCCCCCGCTTCCGCCCCCGACCGCGTTCTTTTTTTCAACTCCTCGAAGGG
CAAGGGCAACAAGCTCATGGACCAGACGTTTGAGACGTTCATGGACGAGC
TGCGAGCAGAGAAGGGACCAGAGGAGGACACCGTCACCAGCCTTTGCCAA
AAAGACCGGCCACATGCAGGGGTGAGTGGGGCGCGGCACAGCCGCCGCCA
GGGGATGTGGATCGAAGCCACGTCCAAATGCTGGGATGTGTGAGCTGCTG
TTGTGGGTACAAGTGCTGCAGCTGCTGTTGTTGATTGGTGATTGGCCTGT
ATTCATCGGCAAGAGTTTGGATTGCCAACCATGTAGGTCGCGCGCAATGT
GCGCAATAATTTCTCCGTGTGCCCGTACCCTTTTTTTTTTTTGTTCTGTA
GCGCCGTGTTGGTGATTTGTGGTCTGTCGTTCGTGGCGCAATCCGATCCG
CCCCCCCCGTTACGCTTACGCTAGCTCGTCCTTGTAATGTCCGTTTTACC
ACACACGCACACGGCAGCATTTTGTGTTTTCAACCGCACTGAGACTGACG
TATTTTTCGTTGATCAGCCGGTTAGCGCGGTCGTCGATGCTAATAACCAA
ACCACATACGCTTGACGTATTTTTTTTGCTTTGTACACCTCCTGACCCTG
CACCACCACCTGTTGCCCTCAACCGTGCCGGAATATGTATCCATCCATGC
GTGCCACAGCACAAGAAGATATCTCAGTTCAGAAAGCGCGGGGACTAACC
AAGGTTTTTAAAGAGGTCGTCAAGCAGTCAATTCACGAGTGGAAAGGCTG
TAAGTGCTTCAATCCCACACAGACCCTGCAGGCGGGTGGGGCGAGAGAAG
GGAGGAGGGGCGTGCAGACGGCGTGAGATTGTGTTGATGTTGCCAGGATA
AGCGTTCTCTTGGGGGGGCGGGGCCGTGGTCCGACCAAAACAATATCGTT
ATATGTGTTCAGAACCCGCCTATAGATCCCATATCTAGCTAGCTCATCGA
AGTTAGCGTTAGCACAGACGGGCCAAGAACAAGAATGAGAGCGACATGGC
GGGTGGTTGCTGCGCGCTCGGCGGCTTGTCAGCCGGGAATATGAAGTAGG
TTGGGGCATGGCGGCGTCTTTTAGAATACTTGTCGCTCCGGGCCATGGCG
AGACGGGAGCGCGGGGCGGAGGCTTGGGCAGAAAGATGGGCTGCTTGCTG
CCTCCTGCTCTCGATGTAGCGCGCACACGGTCGTGGCTGTTTTGTGGTCG
GTCTCTTGCTGCTTTGTTTCGTTCGCCTTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTGGCACGTTTGGTTCTTGTTTCATGTTCCGTGTACTGC
TGTTGCGCGTTTGTGTGTGTGTGTGTGTGTTTTTGTTCTCTATTCTTCTC
TTTCCCGTCCGTCCGTCCTGCAAGGTTTTTGGTCTCATAAGTGTGATATA
AAGTTTTTCCGTCGTCTGCAAGGCTCATGAGTTTCGTGTGGTGTTCTGGT
AATAGTAATAGTGTTAGTGCCGGACTTGTAAGGGAGAGGTTGGGGACTGG
GGGTGCACGCTTAATTCGTTGCCTTCTCTGTTGTTTGACCTGTAGCCACG
CATCCCTTGGAGACCAAGCGCAGTTGGGGGGGGGAGGGGGGTATCAAATC
GTTTAAATAGTCTCAGGCTTGGGGATATTTAGATACGTCCGGTGATGATG
TGTGCTGTGGGGTTATGATTTTTTTTCTCGTGGTTCGGTGACACGCATGG
CTTGTCTTTGCTCGAACTGGCTGGTGGACCGGAACTCTTCCTGCAGGGCG
AGACATCGTTTCGAGGTCATCATGACATCGCGTGGAAACGTCATGTCGCG
CTGATGTCTGCGCGCGGGTGGTCATCGGGTATTTTTTGTGTAATCTTGCC
GCCGTGCCTCGTTTTAAGTGTATTTGTACTCCTTTAGACGGCCGGCCGTC
GGCCTGAGCAAACAAAGTGGTGGCAGTGGTTGCCGGAGAGGACGGGTCGA
ATTTTTGGCCGAAGAGTGGGAAGTACCGCCTCTGACAGGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1496:11803..17444-

>mRNA_E-fasciculatus_F_contig1496.3521.1 ID=mRNA_E-fasciculatus_F_contig1496.3521.1|Name=mRNA_E-fasciculatus_F_contig1496.3521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1496:11803..17444- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCGACAACCGAACCAGCGAACTCTGGAACACATCTTGTGTTTCAA
GTCGCACAGATGCTGCGACAACCGAACCAGCGAACTCTGGAACACATCTT
GTGTTTCAAGTCGCACAGGTTTGAGCCCTACCTCGTGGTGCGAAAGACGG
CCTTGCTGCCCAAGTTCGACGAGCGATTCTTGGGGTATGGCAAGAACAAG
ATCCAATGGTTTGAGCCCTACCTCGTGGTGCGAAAGACGGCCTTGCTGCC
CAAGTTCGACGAGCGATTCTTGGGGTATGGCAAGAACAAGATCCAATGGA
TCAACCATCTTCGATACAGCGGGTTCTCGTTTTATGTGATGCCGGTCAAC
TTCGTCATCCACGCGCCGCATCCCAAGTCTGTCGCGAAGACCTCGTGGGA
AAAGACCGGGGGCGGCAAGCAGGATCAACCATCTTCGATACAGCGGGTTC
TCGTTTTATGTGATGCCGGTCAACTTCGTCATCCACGCGCCGCATCCCAA
GTCTGTCGCGAAGACCTCGTGGGAAAAGACCGGGGGCGGCAAGCAGGGCA
AGGGCAACAAGCTCATGGACCAGACGTTTGAGACGTTCATGGACGAGCTG
CGAGCAGAGAAGGGACCAGAGGAGGACACCGTCACCAGCCTTTGCCAAAA
AGACCGGCCACATGCAGGGGGCAAGGGCAACAAGCTCATGGACCAGACGT
TTGAGACGTTCATGGACGAGCTGCGAGCAGAGAAGGGACCAGAGGAGGAC
ACCGTCACCAGCCTTTGCCAAAAAGACCGGCCACATGCAGGGCACAAGAA
GATATCTCAGTTCAGAAAGCGCGGGGACTAACACAAGAAGATATCTCAGT
TCAGAAAGCGCGGGGACTAA
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