mRNA_E-fasciculatus_F_contig1496.3519.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1496.3519.1 vs. uniprot
Match: A0A6H5JDM9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM9_9PHAE) HSP 1 Score: 358 bits (919), Expect = 2.170e-113 Identity = 186/212 (87.74%), Postives = 196/212 (92.45%), Query Frame = 1
Query: 100 MDNEFGDDDGLRQARSRRRFQTGLVLILLLFFMDARTPQETQSRGTRAAQARTSAKNQEVTRTTVHRLAEDVLDHIVPLGPTYALRSSSNIKGEWRQSDADTDSFRTVVPEMKAADPSEGSGSKQRLDLKDEKIVPSNTETAHFSHSRMSATLVQAKGNPEVSMVHGTLNVGGAAAESGVETLFEGLFFHKYGHMSAVVGASGDELKVVWTP 735
MDNEFGDDDGLRQARSRRRFQTGLV+ LL FFMDARTPQETQ RG RAAQARTSAKNQEVTRTTVHRLAE +LDHIVP GPTYALRSSSNIKGEWR SDA+ SFRTVVP MKAADPSEGSGSK RLDL+DE I PS+TETAHFSHS M A+LVQAKGNPEVS+VHGTLNVGGAA +SGV+TLFEGLFFHK+GHMSAVVGASGDELKVVWTP
Sbjct: 1 MDNEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQDRGKRAAQARTSAKNQEVTRTTVHRLAEGLLDHIVPQGPTYALRSSSNIKGEWRLSDAE--SFRTVVPAMKAADPSEGSGSKHRLDLRDETIAPSDTETAHFSHSHMMASLVQAKGNPEVSIVHGTLNVGGAATKSGVDTLFEGLFFHKFGHMSAVVGASGDELKVVWTP 210
BLAST of mRNA_E-fasciculatus_F_contig1496.3519.1 vs. uniprot
Match: D8LPM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM4_ECTSI) HSP 1 Score: 349 bits (896), Expect = 2.070e-110 Identity = 185/213 (86.85%), Postives = 195/213 (91.55%), Query Frame = 1
Query: 100 MDNEFGDDDGLRQARSRRRFQTGLVLILLLFFMDARTPQETQSRGTRAAQARTSAKNQEVTRTTVHRLAEDVLDHIVPLGPTYALRSSSNIKGEWRQSDADTDSFRTVVPEMKAADPSEGSGSKQRLDLKDEKIVPSNTETAHFSHSRMSATLVQAKGNPEVSMVHGTLNVGGAAAES-GVETLFEGLFFHKYGHMSAVVGASGDELKVVWTP 735
MDNEFGDDDGLRQARSRRRFQTGLV+ LL FFMDARTPQETQ+RG RAAQARTSAKNQEVTRTTVHRLAE +LDHIVP GPTYALRSSS IKGEWR SDA+ SFRTVVP MKAADPSEGSGSK RLDL+DE I PS+TETAH SHSRM A+LVQAKGNPEVS+VHGTLNVG AA +S GV+TLFEGLFFHKYGHMSAVVGASGDELKVVWTP
Sbjct: 1 MDNEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQNRGKRAAQARTSAKNQEVTRTTVHRLAEGLLDHIVPQGPTYALRSSSEIKGEWRLSDAE--SFRTVVPAMKAADPSEGSGSKHRLDLRDETIAPSDTETAHSSHSRMMASLVQAKGNPEVSIVHGTLNVGDAATKSSGVDTLFEGLFFHKYGHMSAVVGASGDELKVVWTP 211 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1496.3519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1496.3519.1 >prot_E-fasciculatus_F_contig1496.3519.1 ID=prot_E-fasciculatus_F_contig1496.3519.1|Name=mRNA_E-fasciculatus_F_contig1496.3519.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=409bp RFHRVRAPEASPGGCVVPFSRHSAPPTEGDQEKMDNEFGDDDGLRQARSRback to top mRNA from alignment at E-fasciculatus_F_contig1496:21..5952- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1496.3519.1 ID=mRNA_E-fasciculatus_F_contig1496.3519.1|Name=mRNA_E-fasciculatus_F_contig1496.3519.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5932bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1496:21..5952- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1496:21..5952- >mRNA_E-fasciculatus_F_contig1496.3519.1 ID=mRNA_E-fasciculatus_F_contig1496.3519.1|Name=mRNA_E-fasciculatus_F_contig1496.3519.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2454bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1496:21..5952- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |