mRNA_E-fasciculatus_F_contig14959.3518.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14959.3518.1
Unique NamemRNA_E-fasciculatus_F_contig14959.3518.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Match: D7FQL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL8_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 3.340e-89
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 1 
Query:   10 FHTCARQALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE 447
            + T   +ALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE
Sbjct:  256 YWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE 401
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BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Match: A0A835YS51_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS51_9STRA)

HSP 1 Score: 216 bits (549), Expect = 3.340e-68
Identity = 108/146 (73.97%), Postives = 123/146 (84.25%), Query Frame = 1 
Query:   10 FHTCARQALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE 447
            + T   +AL+R+H MKIA+INKIIRELW +TY G DIDMIEIVSG+D  S +A RSYNYRV MRK    LDMKGRCSAGQRVLAS+VIRLALAETFC++CGILALDEPTTNLD  NK GLA ALA+II+ RS+Q+NFQLI ITHDE
Sbjct:   68 YWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDE 213
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BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Match: A0A7S3Y9Z4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9Z4_HETAK)

HSP 1 Score: 213 bits (542), Expect = 6.120e-68
Identity = 106/146 (72.60%), Postives = 124/146 (84.93%), Query Frame = 1 
Query:   10 FHTCARQALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE 447
            + T   +AL++FH MKI DINKIIRELW +TY G DI+ IEIVSG++  S +A RSYNYRV M K DA LDMKGRCSAGQRVL+S+VIRLALAETFC++CGILALDEPTTNLD +NK GLA+ALAKII++RSKQ NFQL+ ITHDE
Sbjct:    9 YWTALDKALMQFHRMKIEDINKIIRELWQITYQGNDIESIEIVSGEEGTSNRAGRSYNYRVCMTKGDAHLDMKGRCSAGQRVLSSIVIRLALAETFCLNCGILALDEPTTNLDSDNKRGLANALAKIIAARSKQTNFQLLAITHDE 154
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BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Match: A0A7S2EEH2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EEH2_TRICV)

HSP 1 Score: 201 bits (512), Expect = 4.460e-63
Identity = 100/146 (68.49%), Postives = 120/146 (82.19%), Query Frame = 1 
Query:   10 FHTCARQALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE 447
            +H+   +ALLR+H MKIADINKIIRELW +TY GEDI  IE+ S  D  S +A RSYNYRVVM K    LDM+GRCSAGQRVLAS+VI+LALAETFC++CG++ LDEPTTNLD+ NK GLA ALA+II++R+ QANFQL+ ITHDE
Sbjct:   32 YHSALDKALLRYHGMKIADINKIIRELWTLTYKGEDITNIELASNQDAGS-RAARSYNYRVVMTKGSTPLDMRGRCSAGQRVLASIVIKLALAETFCLNCGVMCLDEPTTNLDYANKRGLAIALAQIIATRAAQANFQLVVITHDE 176
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BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Match: A0A7S2B1T5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1T5_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.950e-62
Identity = 102/139 (73.38%), Postives = 117/139 (84.17%), Query Frame = 1 
Query:   28 QALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHD 444
            +ALLR+H+ KI +IN+IIRELW+ TY G+DID IEIVSG++  S +A RSYNYRV MRK D TLDMKGRCSAGQRVLA +VIRLALAETFC++CGIL LDEPTTNLD  NK GLA ALA IIS R+KQ NFQ+I ITHD
Sbjct:  167 KALLRYHSHKIQEINRIIRELWSTTYMGQDIDSIEIVSGEEGASTRASRSYNYRVAMRKGDTTLDMKGRCSAGQRVLACIVIRLALAETFCLTCGILTLDEPTTNLDEYNKQGLASALADIISIRAKQRNFQVIVITHD 305
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BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Match: A0A7S2CEE0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEE0_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.300e-61
Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 1 
Query:   55 KIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHD 444
            KI +IN+IIRELW  TY G+DID IEI SG+D+ S +AKRSYNYRVVMRK +  LDMKGRCSAGQRVLA +VIRLALAETFC++CGIL LDEPTTNLD  NK GLA ALA IIS RSKQ NFQL+ ITHD
Sbjct:    1 KIQEINRIIRELWTNTYQGQDIDSIEIQSGEDDGSNRAKRSYNYRVVMRKGNQMLDMKGRCSAGQRVLACIVIRLALAETFCLACGILTLDEPTTNLDEYNKSGLATALADIISMRSKQRNFQLVVITHD 130
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BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Match: A0A7R9WT19_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT19_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.320e-61
Identity = 101/147 (68.71%), Postives = 121/147 (82.31%), Query Frame = 1 
Query:   10 FHTCARQALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSG-KAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE 447
            +H+    ALL+FH++KIA+IN+IIR+LW +TY GEDI  IE+VSG  +DSG +A RSYNYRVVM K    +DM+GRCSAGQRVLAS+VIRLALAETFCV+CG +ALDEPT NLD NNK GLA ALA+I + RS Q+NFQLI ITHDE
Sbjct:   92 YHSALDHALLQFHSIKIAEINQIIRDLWRLTYKGEDITTIELVSG--QDSGARASRSYNYRVVMTKGSTRMDMRGRCSAGQRVLASIVIRLALAETFCVNCGCIALDEPTVNLDFNNKRGLAIALAQITADRSAQSNFQLIMITHDE 236
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BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Match: A0A7S2RPE9_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RPE9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 6.110e-61
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 1 
Query:   10 FHTCARQALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE 447
            +H+   +ALLR+H +KI +INKIIRE+W +TY GEDI  IEIVSG+ E++ K  +SYNYRVVM K +  LDM+GRCSAGQRVLAS+VIRLALAETFC++CG + LDEPTTNLD  NK GLA ALA+II++RS Q NFQL+ ITHDE
Sbjct:   67 YHSALDKALLRYHGIKIEEINKIIREVWTLTYKGEDISNIEIVSGE-ENARKTSKSYNYRVVMSKGNTELDMRGRCSAGQRVLASIVIRLALAETFCLNCGFMTLDEPTTNLDFANKRGLAIALAQIIATRSAQQNFQLVIITHDE 211
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BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Match: A0A482SYG0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYG0_9ARCH)

HSP 1 Score: 191 bits (485), Expect = 8.080e-60
Identity = 98/146 (67.12%), Postives = 115/146 (78.77%), Query Frame = 1 
Query:   31 ALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSG--DDEDSG-----KAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE 447
            AL  FHT+KI +INKIIRELW + Y G+DID IE+ SG  +D ++G        RSYNYRVVM+K D  LDM+GRCSAGQ+VLAS+VIRLALAETFC+ CG+LALDEPTTNLD  NKVGLA AL ++I  R+KQ NFQLI ITHDE
Sbjct:   14 ALQTFHTLKIREINKIIRELWQLIYQGQDIDTIELESGVGNDPEAGIVAPSGGSRSYNYRVVMKKGDVPLDMRGRCSAGQKVLASIVIRLALAETFCLDCGMLALDEPTTNLDEANKVGLAQALTRLIVGRAKQQNFQLICITHDE 159
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BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Match: A0A7S0GBN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GBN5_9STRA)

HSP 1 Score: 201 bits (512), Expect = 9.870e-60
Identity = 100/146 (68.49%), Postives = 121/146 (82.88%), Query Frame = 1 
Query:   10 FHTCARQALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE 447
            +++   +ALL+FH MKI DINKIIRELW +TY GEDI  IE+VS  D+ + KA RSYNYRVVM K +  +DM+GRCSAGQRVLAS+VIRLALAETFC+SCG+ ALDEPTTNLD+ NK GLA ALA+I+++RS Q NFQL+ ITHDE
Sbjct:  325 YYSALDKALLQFHGMKIGDINKIIRELWTLTYKGEDISNIELVS--DQGTSKASRSYNYRVVMSKGNTQMDMRGRCSAGQRVLASLVIRLALAETFCISCGVFALDEPTTNLDYENKRGLAIALAQILATRSAQHNFQLLIITHDE 468
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14959.3518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQL8_ECTSI3.340e-8995.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YS51_9STRA3.340e-6873.97P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3Y9Z4_HETAK6.120e-6872.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2EEH2_TRICV4.460e-6368.49Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2B1T5_9STRA1.950e-6273.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2CEE0_9STRA2.300e-6175.38Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9WT19_9STRA2.320e-6168.71Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2RPE9_9STRA6.110e-6167.12Hypothetical protein n=2 Tax=Eucampia antarctica T... [more]
A0A482SYG0_9ARCH8.080e-6067.12Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0GBN5_9STRA9.870e-6068.49Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14959contigE-fasciculatus_F_contig14959:177..2602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.8
Seed ortholog evalue1.2e-71
Seed eggNOG ortholog2880.D7FQL8
Preferred nameRAD50
KEGG koko:K10866
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000075,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003691,GO:0003697,GO:0003824,GO:0004003,GO:0004017,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006278,GO:0006281,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010705,GO:0010833,GO:0016043,GO:0016233,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030674,GO:0030870,GO:0031297,GO:0031323,GO:0031324,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032074,GO:0032076,GO:0032078,GO:0032200,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035753,GO:0035825,GO:0035861,GO:0036094,GO:0040020,GO:0042138,GO:0042162,GO:0042592,GO:0042623,GO:0042769,GO:0042770,GO:0043047,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043570,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046940,GO:0048285,GO:0048519,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051606,GO:0051716,GO:0051726,GO:0051783,GO:0051880,GO:0055086,GO:0060090,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0090734,GO:0097159,GO:0097367,GO:0097551,GO:0097552,GO:0098687,GO:0098847,GO:0110025,GO:0140013,GO:0140097,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505,GO:1990898,GO:1990918,GO:2000241
EggNOG free text desc.G-quadruplex DNA binding
EggNOG OGsCOG0419@1,KOG0962@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categorymitochondrion
Exons4
Model size447
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14959.3518.1prot_E-fasciculatus_F_contig14959.3518.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14959 177..2602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927975.2414503-CDS-E-fasciculatus_F_contig14959:176..3491622927975.2414503-CDS-E-fasciculatus_F_contig14959:176..349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14959 177..349 +
1695995774.7016027-CDS-E-fasciculatus_F_contig14959:176..3491695995774.7016027-CDS-E-fasciculatus_F_contig14959:176..349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14959 177..349 +
1622927975.269791-CDS-E-fasciculatus_F_contig14959:1066..11511622927975.269791-CDS-E-fasciculatus_F_contig14959:1066..1151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14959 1067..1151 +
1695995774.7145424-CDS-E-fasciculatus_F_contig14959:1066..11511695995774.7145424-CDS-E-fasciculatus_F_contig14959:1066..1151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14959 1067..1151 +
1622927975.2833207-CDS-E-fasciculatus_F_contig14959:1774..18761622927975.2833207-CDS-E-fasciculatus_F_contig14959:1774..1876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14959 1775..1876 +
1695995774.7252216-CDS-E-fasciculatus_F_contig14959:1774..18761695995774.7252216-CDS-E-fasciculatus_F_contig14959:1774..1876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14959 1775..1876 +
1622927975.2957778-CDS-E-fasciculatus_F_contig14959:2515..26021622927975.2957778-CDS-E-fasciculatus_F_contig14959:2515..2602Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14959 2516..2602 +
1695995774.736091-CDS-E-fasciculatus_F_contig14959:2515..26021695995774.736091-CDS-E-fasciculatus_F_contig14959:2515..2602Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14959 2516..2602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14959.3518.1

>prot_E-fasciculatus_F_contig14959.3518.1 ID=prot_E-fasciculatus_F_contig14959.3518.1|Name=mRNA_E-fasciculatus_F_contig14959.3518.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=149bp
LCSFHTCARQALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDD
EDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFC
VSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDE
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mRNA from alignment at E-fasciculatus_F_contig14959:177..2602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14959.3518.1 ID=mRNA_E-fasciculatus_F_contig14959.3518.1|Name=mRNA_E-fasciculatus_F_contig14959.3518.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2426bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14959:177..2602+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTGTTCGTTTCACACGTGTGCACGACAGGCGCTGCTCCGGTTCCACAC
GATGAAGATCGCCGACATCAACAAGATCATCCGGGAGCTCTGGGCCATGA
CCTACTCCGGCGAGGACATCGATATGATCGAGATCGTCTCGGGGGATGAC
GAGGATAGCGGCAAGGCCAAGCGGTGAGAGAGAGGTGTAGTCTAGGTTTT
CGACGGCATACAAAGAGCATGGCATGTGCGTACTTGGCAGCAACAGGCGG
CTTTTTCGATTGGCGTACTGCTGTAGACTCCAAATTGGGATTTCAGCCAG
CACAATCCCCGAAAAAAGCAATTTTGTACCCTAGGTGACACAAGATGGCA
AACCCCCTGGACGAAGATTAATTGCTCGACAGCAGAATGAGTGACGGTGC
CAAAAATGGCCACGTTGGATCCGACTGTCTCGTCGAGAGAGGGAGAGAGA
GAGCTTTCCGAAAATGCGCGACTTTGACTGGTGTGGCATCATCTTTCGTC
GTGGAGTAGCCGAGCTTTGAAAATCGGTGCAGGAGGTGTGCTATCTTATG
CTCCCTATATATATAGCCGTCGCATTTCACGGCGACGACGACGGCGGTGC
CAATCGGGTTACCGCCCGTTGAGATGTGATTGAAGTGGTGTGAAAGCGTA
CTGTACCTCTGTTGTTGGTCCCGTCTCGTCTCCGAATAGGAACATTTTGT
GCGGCACCGTTGTCCGCATATCAGTAGAGAACGCCCTCCCGGCGCGGAAG
AGGGGCGTTGTTGCTGCCTTTGGCACCTTTGGCACTATCTGCAAACGGAA
CCTTTTCCTTGGTGTAGCCACACGCAAGGGATGTATAGCCACGCACCCGC
TGCTGCAACACGGAACTTTTGTTTGTACCGATGTTATTAGGTCCTACAAC
TACCGGGTGGTGATGCGCAAGAACGATGCCACCTTGGACATGAAGGGCCG
CTGTAGCGCGGGTCAGAGAGTGCTGGTAAGCCACTTGCGAGAGATAGAGG
GAGAGATAGACAGGCAGGGGGAAGATAGGGACAGAGGGATACGTAGGGGG
GAGGGGTCTGAACTCGGTTACTGCGGGAACGACGCGGGGTCACAAAGATT
ATGTCATGCCACTCTGGGCTCGTTAGCGCACTTGTAATATGTAAACTACA
CGACTCTTATGCGTAGACGGGATCGGAGTCGACATTCTAGAAGTTTGGTC
GTGGAGATGAGCTCTTGCTTCCGGTTCACTGCCTCGTTTCTTGTTTCTGT
ACTGCCGTCAATCACAAGCAGTCGACATTCCCATAAATCAACACGTCGGA
TTCGCGAATCGACTGATGGAGACGCTTTGTGTTCAATGCACAGCCAATTT
CGATTCACAACTTTACTCAAGGGGTGTTTTCCTGGGTTGGTTTTGGCTGA
TTACTACGCGTTAGGGTTGCAACCTCGCACATCGTGTAAAGTAAAGTAAA
GTCGTTTGGGTTTTGTTCGCCTCCTTTGGTAGCGACCGAGGTTTCAGAAC
GGTGTTTGCTGTTAGACTGTAACCAAAGCAACCAAACAACAACTCTGTTC
GGTTCTACCCTCTGCCGCGTTTGTCGTTGTCCCTCGCCCTCTGTGCAGGC
GAGCGTGGTGATCCGGCTTGCTCTGGCTGAGACCTTTTGCGTCAGCTGCG
GCATCCTCGCACTCGACGAGCCGACCACCAACCTCGACCACAACAACAAG
GTGAGGGTTTATGTTGTTCCCTTCGAGTATCCGAGTGCATGGCATGGGTC
CGGTCTCGACGAAGCGGCGCTGCTCAATCCGGAATGTTCCATGGCCGAAA
CAACCGCGACCGGTGCACAACGGAAATGAAAGCATCACCATTATTGGTTT
TTTGTCTGATGGCGATGCAAGCTTATGAGTACGAGAGAACAATGCTCAGG
TTTGAGTCTAGTCTATGACTCTGTACCCAACGCCGACTCCCACTCAATCA
CGGAGCCCCCCGGCGTTGTATGAATTATCATCTTTGCCATGGAAGTATGC
TATTACGAATTTCATGTCCGGGAAAATGTTTTGCGGACGTTCGTCGACGC
TAGGCCTCTTGTCTGTTGCTGTAGTACCTTGAGGGGGTGAGAGTCTTGAC
ATGTTGGAAGGGTTTGCGGACAATTTCCATTTGTTCCTGGTGCGAGCACG
ATGCGCGTGCAAGTGTGTGCATGCGACCCCGACGACCAGCCCATGACGAC
GTATTTACAGCCCCCCCCCCTGCTTTCACCTCGAGCGATTGAAGCATAAC
GGTTCGTGTCTCCGACGCCGTATGTCCGTCCGTTTCGTCTCTTTTCGACG
GAAAAAATCGGTGGAATAAATAAATATATTTGAAAACAGGTGGGGCTGGC
GCACGCGCTTGCCAAGATCATCAGCAGCCGGTCCAAGCAGGCCAACTTCC
AGCTGATCACCATCACGCACGACGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14959:177..2602+

>mRNA_E-fasciculatus_F_contig14959.3518.1 ID=mRNA_E-fasciculatus_F_contig14959.3518.1|Name=mRNA_E-fasciculatus_F_contig14959.3518.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14959:177..2602+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTGTTCGTTTCACACGTGTGCACGACAGGCGCTGCTCCGGTTCCACAC
GATGAAGATCGCCGACATCAACAAGATCATCCGGGAGCTCTGGGCCATGA
CCTACTCCGGCGAGGACATCGATATGATCGAGATCGTCTCGGGGGATGAC
GAGGATAGCGGCAAGGCCAAGCGTTGTGTTCGTTTCACACGTGTGCACGA
CAGGCGCTGCTCCGGTTCCACACGATGAAGATCGCCGACATCAACAAGAT
CATCCGGGAGCTCTGGGCCATGACCTACTCCGGCGAGGACATCGATATGA
TCGAGATCGTCTCGGGGGATGACGAGGATAGCGGCAAGGCCAAGCGGTCC
TACAACTACCGGGTGGTGATGCGCAAGAACGATGCCACCTTGGACATGAA
GGGCCGCTGTAGCGCGGGTCAGAGAGTGCTGGTCCTACAACTACCGGGTG
GTGATGCGCAAGAACGATGCCACCTTGGACATGAAGGGCCGCTGTAGCGC
GGGTCAGAGAGTGCTGGCGAGCGTGGTGATCCGGCTTGCTCTGGCTGAGA
CCTTTTGCGTCAGCTGCGGCATCCTCGCACTCGACGAGCCGACCACCAAC
CTCGACCACAACAACAAGGCGAGCGTGGTGATCCGGCTTGCTCTGGCTGA
GACCTTTTGCGTCAGCTGCGGCATCCTCGCACTCGACGAGCCGACCACCA
ACCTCGACCACAACAACAAGGTGGGGCTGGCGCACGCGCTTGCCAAGATC
ATCAGCAGCCGGTCCAAGCAGGCCAACTTCCAGCTGATCACCATCACGCA
CGACGAGGTGGGGCTGGCGCACGCGCTTGCCAAGATCATCAGCAGCCGGT
CCAAGCAGGCCAACTTCCAGCTGATCACCATCACGCACGACGAG
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