mRNA_E-fasciculatus_F_contig14950.3516.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14950.3516.1
Unique NamemRNA_E-fasciculatus_F_contig14950.3516.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14950.3516.1 vs. uniprot
Match: A0A6H5KTG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTG8_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 8.700e-116
Identity = 166/191 (86.91%), Postives = 180/191 (94.24%), Query Frame = 1 
Query:   16 REGIVLVHKGDESCSPDFDLLGLSGFDKHPEMYSLVSVDAEHADKELLDKLGVDPAILSKPSKCPSLSVVPRRSTVEAPAVSLPALDKKGSYHLNAVKTQQVSVGIVNEMDFPLDIHYQWWDDPARPTHIRTLSPGTENWMLSFKTTVVLALNKETQEEVSRFLVKGHGLFTVAERSCTAETCGTSEGAET 588
            REG+VLVHKGDESC+PDFD LGLS F  HP+MYSLVSVDA+HADKELLDKLGVDPA LS+P KCPSLS+VPRRSTVEAPAV LP LDK+GSYHLNAVKTQQVSVGIVNEMDF LDIHYQWW++P +PTHIRTL+PGTENWMLS+KTT+VLALNKETQEEVSR+LVKGHGLFTVAERSCTAETCGTSEG ET
Sbjct:   62 REGMVLVHKGDESCAPDFDTLGLSVFGDHPDMYSLVSVDADHADKELLDKLGVDPATLSEPKKCPSLSIVPRRSTVEAPAVILPTLDKRGSYHLNAVKTQQVSVGIVNEMDFDLDIHYQWWNEPVKPTHIRTLAPGTENWMLSYKTTLVLALNKETQEEVSRYLVKGHGLFTVAERSCTAETCGTSEGTET 252
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14950.3516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTG8_9PHAE8.700e-11686.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14950contigE-fasciculatus_F_contig14950:1506..3171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.8
Seed ortholog evalue3.3e-93
Seed eggNOG ortholog2880.D8LR21
EggNOG OGs2DE90@1,2S5PQ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_004670.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size588
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14950.3516.1prot_E-fasciculatus_F_contig14950.3516.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14950 1506..3171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927975.017256-CDS-E-fasciculatus_F_contig14950:1505..16551622927975.017256-CDS-E-fasciculatus_F_contig14950:1505..1655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14950 1506..1655 +
1695995774.603104-CDS-E-fasciculatus_F_contig14950:1505..16551695995774.603104-CDS-E-fasciculatus_F_contig14950:1505..1655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14950 1506..1655 +
1622927975.0339653-CDS-E-fasciculatus_F_contig14950:2017..21481622927975.0339653-CDS-E-fasciculatus_F_contig14950:2017..2148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14950 2018..2148 +
1695995774.616069-CDS-E-fasciculatus_F_contig14950:2017..21481695995774.616069-CDS-E-fasciculatus_F_contig14950:2017..2148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14950 2018..2148 +
1622927975.0511944-CDS-E-fasciculatus_F_contig14950:2517..26461622927975.0511944-CDS-E-fasciculatus_F_contig14950:2517..2646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14950 2518..2646 +
1695995774.6242716-CDS-E-fasciculatus_F_contig14950:2517..26461695995774.6242716-CDS-E-fasciculatus_F_contig14950:2517..2646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14950 2518..2646 +
1622927975.0636115-CDS-E-fasciculatus_F_contig14950:2993..31711622927975.0636115-CDS-E-fasciculatus_F_contig14950:2993..3171Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14950 2994..3171 +
1695995774.6397932-CDS-E-fasciculatus_F_contig14950:2993..31711695995774.6397932-CDS-E-fasciculatus_F_contig14950:2993..3171Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14950 2994..3171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14950.3516.1

>prot_E-fasciculatus_F_contig14950.3516.1 ID=prot_E-fasciculatus_F_contig14950.3516.1|Name=mRNA_E-fasciculatus_F_contig14950.3516.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=196bp
MYQSRREGIVLVHKGDESCSPDFDLLGLSGFDKHPEMYSLVSVDAEHADK
ELLDKLGVDPAILSKPSKCPSLSVVPRRSTVEAPAVSLPALDKKGSYHLN
AVKTQQVSVGIVNEMDFPLDIHYQWWDDPARPTHIRTLSPGTENWMLSFK
TTVVLALNKETQEEVSRFLVKGHGLFTVAERSCTAETCGTSEGAET
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mRNA from alignment at E-fasciculatus_F_contig14950:1506..3171+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14950.3516.1 ID=mRNA_E-fasciculatus_F_contig14950.3516.1|Name=mRNA_E-fasciculatus_F_contig14950.3516.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14950:1506..3171+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTATCAATCACGCAGGGAAGGGATAGTGCTTGTGCACAAGGGAGATGA
GAGCTGCTCCCCGGACTTCGACCTCCTCGGCCTGTCGGGCTTCGACAAGC
ACCCAGAGATGTACTCGCTCGTGTCTGTGGATGCCGAGCACGCGGACAAG
GTACACATGCATATGAGAAAAGGGGTTGGTTGATTGGTTTTTGTACGCAT
ATGTAGAGGCAGACATGGTGGTGGAAGGTGGAGAGGCTGTATAACAGAGG
GGAAGAAGGCAGAAGGAACGACCTCGCTGCCGGGGAAGGATTTTTGTTTT
TCTTGTGTTTCATCATTAAAAAAGCAGCGCTTACACTACTCCGCAGCTTC
TCTGCGATGTAGGAGCTCCAACCCGTGGATCACACAGGAGAGAGATGGTA
ATATAAATATGCACAAGCGTTCGATTGAACGACGTGACTTGCTGCCTGTA
TGCGCTCTGTGCTGAAAACCCCATGTGTTGTTGTTTCGTTTTGTTGTTAT
CGTTGGTGGCAGGAGCTGCTGGACAAGCTGGGTGTCGATCCTGCCATCCT
CTCCAAACCGAGCAAATGCCCCTCGCTGAGTGTCGTTCCGAGGCGCTCCA
CCGTAGAAGCTCCGGCGGTCAGTTTGCCCGCGCTCGACAAGAAGTGAGTG
ACTGTTTTGTCGTACCCAGTTTACTCGCTGCTCACCCCTCCTGCCGTCAA
GAATTAGCGTCGTCTGGTTTCTCCCTTGGTGATTTTTCTTTTGTTCTTGG
AGTGACCTTTACAGTTTGTTTGTTTTGCGGGGGCCCGTCTTGTTCGTTTG
ACCTTTGTTCGACCTTTGTTTGTCTCTCTGTCTCCCTTTGTCTATCTGTT
GTGTGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCATCTC
TTGCTCTCTCTCTCACTCTCTCCTCTCTTTCTCTTTCCCCCTCTCCACCT
CTCTCTCCTCCCTCTTCTCTGCCTTTCTACGCATCTTTCTTGCTCGTGTC
CTCCAACAAAAGGGGAAGCTACCATCTCAACGCCGTCAAGACCCAGCAGG
TCTCCGTGGGCATCGTGAACGAGATGGACTTCCCGCTGGACATCCACTAC
CAGTGGTGGGACGACCCGGCCAGGCCGACGCACATCAGGACGTGAGACGA
GAAGAAGAGAGATGGTTCTTGTCGACGCCATGCTCTCAAGAAACGCACTT
TCAGAAAGGGCAGTGGTGGCGGAAGGAATGGAAAGCAGTTTTTTTGTGCC
GTGGATCAGGCACGGGGTTTGCATTGTGTAGTTGAGACTGTTGTGGTTGG
AGCTGCGCCTATGTCCGTGCTTGTAATAACATTAGAGGTGCTACTACAAC
TGCTGCTGTTATAGAGACATTGAGGTGCTGCCGCTGTGATGTGCATGTAC
TCGCTGCGAAGCTACCTCGCCACGAGACAGACAAGCCCAAAGCACAACCT
TTGCTCAAACCACAACACCACCATCACCCATCCATCAGGCTTTCGCCAGG
GACGGAGAACTGGATGCTGAGCTTCAAGACCACCGTGGTGTTGGCCCTCA
ACAAGGAGACCCAGGAGGAGGTGTCGAGGTTCCTCGTCAAAGGGCACGGG
CTCTTCACCGTGGCGGAGAGGTCGTGCACCGCCGAGACCTGCGGCACTTC
GGAGGGGGCGGAGACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14950:1506..3171+

>mRNA_E-fasciculatus_F_contig14950.3516.1 ID=mRNA_E-fasciculatus_F_contig14950.3516.1|Name=mRNA_E-fasciculatus_F_contig14950.3516.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1176bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14950:1506..3171+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTATCAATCACGCAGGGAAGGGATAGTGCTTGTGCACAAGGGAGATGA
GAGCTGCTCCCCGGACTTCGACCTCCTCGGCCTGTCGGGCTTCGACAAGC
ACCCAGAGATGTACTCGCTCGTGTCTGTGGATGCCGAGCACGCGGACAAG
ATGTATCAATCACGCAGGGAAGGGATAGTGCTTGTGCACAAGGGAGATGA
GAGCTGCTCCCCGGACTTCGACCTCCTCGGCCTGTCGGGCTTCGACAAGC
ACCCAGAGATGTACTCGCTCGTGTCTGTGGATGCCGAGCACGCGGACAAG
GAGCTGCTGGACAAGCTGGGTGTCGATCCTGCCATCCTCTCCAAACCGAG
CAAATGCCCCTCGCTGAGTGTCGTTCCGAGGCGCTCCACCGTAGAAGCTC
CGGCGGTCAGTTTGCCCGCGCTCGACAAGAAGAGCTGCTGGACAAGCTGG
GTGTCGATCCTGCCATCCTCTCCAAACCGAGCAAATGCCCCTCGCTGAGT
GTCGTTCCGAGGCGCTCCACCGTAGAAGCTCCGGCGGTCAGTTTGCCCGC
GCTCGACAAGAAGGGAAGCTACCATCTCAACGCCGTCAAGACCCAGCAGG
TCTCCGTGGGCATCGTGAACGAGATGGACTTCCCGCTGGACATCCACTAC
CAGTGGTGGGACGACCCGGCCAGGCCGACGCACATCAGGACGGGAAGCTA
CCATCTCAACGCCGTCAAGACCCAGCAGGTCTCCGTGGGCATCGTGAACG
AGATGGACTTCCCGCTGGACATCCACTACCAGTGGTGGGACGACCCGGCC
AGGCCGACGCACATCAGGACGCTTTCGCCAGGGACGGAGAACTGGATGCT
GAGCTTCAAGACCACCGTGGTGTTGGCCCTCAACAAGGAGACCCAGGAGG
AGGTGTCGAGGTTCCTCGTCAAAGGGCACGGGCTCTTCACCGTGGCGGAG
AGGTCGTGCACCGCCGAGACCTGCGGCACTTCGGAGGGGGCGGAGACGGC
TTTCGCCAGGGACGGAGAACTGGATGCTGAGCTTCAAGACCACCGTGGTG
TTGGCCCTCAACAAGGAGACCCAGGAGGAGGTGTCGAGGTTCCTCGTCAA
AGGGCACGGGCTCTTCACCGTGGCGGAGAGGTCGTGCACCGCCGAGACCT
GCGGCACTTCGGAGGGGGCGGAGACG
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