mRNA_E-fasciculatus_F_contig1495.3515.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1495.3515.1
Unique NamemRNA_E-fasciculatus_F_contig1495.3515.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1495.3515.1 vs. uniprot
Match: D7FUZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ9_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 4.890e-54
Identity = 118/149 (79.19%), Postives = 122/149 (81.88%), Query Frame = 1 
Query:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKDVQPEPPSAGAAAAGXXXXXXXXXXXXXXXXXXXXXXLQ--PHVDLTGGAGARGSTGSGARGGGADPAA-NARDDAELIKLLDSPQPAMNAE 438
            MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAK+VQPEP SA   A+ XXXXXXXXXXXXXX        +    HVDLTGG GARGST SGA G GAD AA  ARDDAELIKLLDSP  A NA+
Sbjct:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVPLMAGLQHVDLTGGMGARGSTVSGASGSGADTAAAKARDDAELIKLLDSPPTATNAK 149
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BLAST of mRNA_E-fasciculatus_F_contig1495.3515.1 vs. uniprot
Match: D7FZQ8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ8_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 3.890e-49
Identity = 116/150 (77.33%), Postives = 120/150 (80.00%), Query Frame = 1 
Query:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKDVQPEPPSAGAAAAGXXXXXXXXXXXXXXXXXXXXXXLQ--PHVDLTGGAGARGSTGSGARGGGADPAA-NARDDAELIKLLDSPQPAMNAEV 441
            MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHH VLLVSGEHVLLHGAK+VQPEP SA   A+ XXXXXXXXXXXXXX        +    HVDLTGG GARGST S   G GAD AA  ARDDAELIKLLDSP  A NAE+
Sbjct:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHDVLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVPPMAGLQHVDLTGGMGARGSTVSXXSGSGADTAAAKARDDAELIKLLDSPPTATNAEI 150
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BLAST of mRNA_E-fasciculatus_F_contig1495.3515.1 vs. uniprot
Match: A0A6H5KEJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.590e-35
Identity = 80/107 (74.77%), Postives = 84/107 (78.50%), Query Frame = 1 
Query:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKDVQPEPPSAGAAAAGXXXXXXXXXXXXXXXXXXXXXXLQ--PHVDLTGGA 315
            MDVLRDAEKT KSTGVGSPTFR+LSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAK+VQPEPPSA   A+ XXXXXXXX              +    HVDLTGGA
Sbjct:    1 MDVLRDAEKTGKSTGVGSPTFRQLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPPSAAGGASXXXXXXXXXSVGSGAGASASVPPMAGLQHVDLTGGA 107
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1495.3515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUZ9_ECTSI4.890e-5479.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZQ8_ECTSI3.890e-4977.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KEJ6_9PHAE4.590e-3574.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1495contigE-fasciculatus_F_contig1495:15372..15821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size450
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927974.978612-CDS-E-fasciculatus_F_contig1495:15371..158211622927974.978612-CDS-E-fasciculatus_F_contig1495:15371..15821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1495 15372..15821 +
1695995774.5923512-CDS-E-fasciculatus_F_contig1495:15371..158211695995774.5923512-CDS-E-fasciculatus_F_contig1495:15371..15821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1495 15372..15821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1495.3515.1prot_E-fasciculatus_F_contig1495.3515.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1495 15372..15821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1495.3515.1

>prot_E-fasciculatus_F_contig1495.3515.1 ID=prot_E-fasciculatus_F_contig1495.3515.1|Name=mRNA_E-fasciculatus_F_contig1495.3515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=150bp
MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEH
VLLHGAKDVQPEPPSAGAAAAGGAAAGGSSAGVGASLGVPPAAGLQPHVD
LTGGAGARGSTGSGARGGGADPAANARDDAELIKLLDSPQPAMNAEVRL*
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mRNA from alignment at E-fasciculatus_F_contig1495:15372..15821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1495.3515.1 ID=mRNA_E-fasciculatus_F_contig1495.3515.1|Name=mRNA_E-fasciculatus_F_contig1495.3515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1495:15372..15821+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGTCCTGCGGGACGCCGAGAAGACTGAGAAGTCTACCGGCGTGGG
GTCTCCTACCTTCCGCCGGTTGAGCGCTGTGAAGCAGGTGGTCGAGCATG
TCGTCGACCTGGTCCACCACCACGGCGTGCTCCTGGTGTCAGGAGAACAT
GTGCTTCTTCATGGGGCGAAGGACGTGCAGCCGGAGCCCCCTTCCGCGGG
GGCGGCCGCGGCCGGAGGAGCAGCCGCGGGAGGATCGAGCGCGGGAGTTG
GGGCGTCCCTGGGCGTGCCTCCGGCAGCAGGTCTGCAGCCGCACGTGGAC
CTCACCGGGGGAGCGGGAGCCCGAGGCTCGACCGGGAGCGGAGCGCGTGG
GGGTGGAGCGGACCCAGCCGCTAACGCCCGTGACGATGCGGAGCTCATCA
AGCTTTTGGACTCCCCGCAGCCCGCCATGAACGCGGAGGTGCGTCTTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1495:15372..15821+

>mRNA_E-fasciculatus_F_contig1495.3515.1 ID=mRNA_E-fasciculatus_F_contig1495.3515.1|Name=mRNA_E-fasciculatus_F_contig1495.3515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1495:15372..15821+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGTCCTGCGGGACGCCGAGAAGACTGAGAAGTCTACCGGCGTGGG
GTCTCCTACCTTCCGCCGGTTGAGCGCTGTGAAGCAGGTGGTCGAGCATG
TCGTCGACCTGGTCCACCACCACGGCGTGCTCCTGGTGTCAGGAGAACAT
GTGCTTCTTCATGGGGCGAAGGACGTGCAGCCGGAGCCCCCTTCCGCGGG
GGCGGCCGCGGCCGGAGGAGCAGCCGCGGGAGGATCGAGCGCGGGAGTTG
GGGCGTCCCTGGGCGTGCCTCCGGCAGCAGGTCTGCAGCCGCACGTGGAC
CTCACCGGGGGAGCGGGAGCCCGAGGCTCGACCGGGAGCGGAGCGCGTGG
GGGTGGAGCGGACCCAGCCGCTAACGCCCGTGACGATGCGGAGCTCATCA
AGCTTTTGGACTCCCCGCAGCCCGCCATGAACGCGGAGGTGCGTCTTTGA
ATGGACGTCCTGCGGGACGCCGAGAAGACTGAGAAGTCTACCGGCGTGGG
GTCTCCTACCTTCCGCCGGTTGAGCGCTGTGAAGCAGGTGGTCGAGCATG
TCGTCGACCTGGTCCACCACCACGGCGTGCTCCTGGTGTCAGGAGAACAT
GTGCTTCTTCATGGGGCGAAGGACGTGCAGCCGGAGCCCCCTTCCGCGGG
GGCGGCCGCGGCCGGAGGAGCAGCCGCGGGAGGATCGAGCGCGGGAGTTG
GGGCGTCCCTGGGCGTGCCTCCGGCAGCAGGTCTGCAGCCGCACGTGGAC
CTCACCGGGGGAGCGGGAGCCCGAGGCTCGACCGGGAGCGGAGCGCGTGG
GGGTGGAGCGGACCCAGCCGCTAACGCCCGTGACGATGCGGAGCTCATCA
AGCTTTTGGACTCCCCGCAGCCCGCCATGAACGCGGAGGTGCGTCTTTGA
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