mRNA_E-fasciculatus_F_contig14947.3510.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14947.3510.1
Unique NamemRNA_E-fasciculatus_F_contig14947.3510.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Match: A0A6H5K5N4_9PHAE (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5N4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 3.000e-30
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    1 QSWQLFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKIGKYYAVEDMLTVDP 192
            Q   LFEAVGKEPKILKVPVLLFDVIIGALD+LAGILPKQFEDPAELAKIGKYYAVEDMLTVDP
Sbjct:  273 QGKLLFEAVGKEPKILKVPVLLFDVIIGALDLLAGILPKQFEDPAELAKIGKYYAVEDMLTVDP 336
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BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Match: A0A699ZC23_HAELA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZC23_HAELA)

HSP 1 Score: 71.6 bits (174), Expect = 2.320e-14
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 QSWQLFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKIGKYYAVEDMLTVDP 192
            Q+  LF   GK+  +  VPV L D IIG LD  A  LP QFED AE  +IGKYYAVE ML +DP
Sbjct:   32 QAQLLFNITGKKENLFPVPVALMDGIIGILDFFAKFLPAQFEDAAEFGRIGKYYAVESMLVLDP 95
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BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Match: A0A835ZBC9_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBC9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.340e-14
Identity = 40/64 (62.50%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 QSWQLFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKIGKYYAVEDMLTVDP 192
            Q   L EA G +P I+K PV LFD IIG LD     LP  FED AELA+IGKYYAVEDMLT  P
Sbjct:  230 QGELLAEACGVKPNIMKAPVGLFDAIIGGLDFFGNFLPS-FEDAAELARIGKYYAVEDMLTTQP 292
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BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Match: A0A7R9U2T7_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2T7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.130e-14
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 QSWQLFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKIGKYYAVEDMLT 183
            Q   LF+AVGK+PK + VP  LFDVIIG  + LA  LP  FED AE  +IG+YYAVEDMLT
Sbjct:  276 QGELLFQAVGKDPKFVTVPASLFDVIIGGFEFLARFLPN-FEDTAEFGRIGRYYAVEDMLT 335
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BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Match: A0A2R6WTV5_MARPO (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WTV5_MARPO)

HSP 1 Score: 72.0 bits (175), Expect = 3.210e-13
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 QSWQLFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKIGKYYAVEDMLTVDP 192
            Q   L+E +GKEPK +KVP+ + D +IG LD L  I P   ED AE  KIG+YYA E ML +DP
Sbjct:  325 QGTMLYEVIGKEPKFIKVPIEIMDFVIGVLDFLVKIFPN-LEDSAEFGKIGRYYAAESMLVLDP 387
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BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Match: UPI00053FF8B9 (divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF8B9)

HSP 1 Score: 71.2 bits (173), Expect = 5.960e-13
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 QSWQLFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKIGKYYAVEDMLTVDP 192
            Q   LF+ VGKEPK +KVP+ + D  IG LD LA I P   ED AE  KIG+YYA E ML +DP
Sbjct:  317 QGEMLFKLVGKEPKFIKVPIEIMDFAIGVLDFLAKIFPS-LEDAAEFGKIGRYYAAESMLVLDP 379
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BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Match: A0A7S1XT73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XT73_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.140e-13
Identity = 38/62 (61.29%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 QSWQLFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKIGKYYAVEDMLTV 186
            Q   LF+AVGKEPK + VP  LFDVIIG LD LA   P    D AE  +IGKYYAVEDM+ V
Sbjct:  157 QGELLFKAVGKEPKFITVPSKLFDVIIGGLDFLAKFFPGM-ADTAEFGRIGKYYAVEDMVAV 217
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BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Match: A0A5P1ES57_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ES57_ASPOF)

HSP 1 Score: 67.8 bits (164), Expect = 9.610e-13
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   13 LFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKIGKYYAVEDMLTVDP 192
            LF+ +GKEPK LKVP+ + D  IG LD LA + P   ED AE  KIG+YYA E ML +DP
Sbjct:   54 LFKLLGKEPKFLKVPLGIMDFAIGVLDFLARVFPA-LEDAAEFGKIGRYYAAESMLVLDP 112
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BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Match: A0A8J5KS34_ZINOF (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KS34_ZINOF)

HSP 1 Score: 70.5 bits (171), Expect = 1.070e-12
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 QSWQLFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKIGKYYAVEDMLTVDP 192
            Q   LF+ +G+EPK LKVP+ + D +IG LD LA I P   ED AE  KIG+YYA E ML +DP
Sbjct:  288 QGELLFKLLGREPKFLKVPIQVMDYVIGVLDFLAKIFPS-LEDAAEFGKIGRYYAAESMLVLDP 350
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Match: UPI001C4DC9B4 (divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4DC9B4)

HSP 1 Score: 70.5 bits (171), Expect = 1.110e-12
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 QSWQLFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKIGKYYAVEDMLTVDP 192
            Q   LF+ +G+EPK LKVP+ + D +IG LD LA I P   ED AE  KIG+YYA E ML +DP
Sbjct:  309 QGELLFKLLGREPKFLKVPIQVMDYVIGVLDFLAKIFPS-LEDAAEFGKIGRYYAAESMLVLDP 371
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14947.3510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5N4_9PHAE3.000e-3093.75Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A699ZC23_HAELA2.320e-1456.25NAD(P)-bd_dom domain-containing protein n=1 Tax=Ha... [more]
A0A835ZBC9_9STRA3.340e-1462.50Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A7R9U2T7_9STRA8.130e-1462.30Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A2R6WTV5_MARPO3.210e-1353.13Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
UPI00053FF8B95.960e-1356.25divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A7S1XT73_9STRA9.140e-1361.29Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5P1ES57_ASPOF9.610e-1356.67Uncharacterized protein n=1 Tax=Asparagus officina... [more]
A0A8J5KS34_ZINOF1.070e-1254.69Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
UPI001C4DC9B41.110e-1254.69divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14947contigE-fasciculatus_F_contig14947:34..225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.4e-23
Seed eggNOG ortholog2880.D7FPA5
Preferred nameDVR
KEGG rclassRC01376
KEGG koko:K19073
KEGG ReactionR06272,R06896
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016020,GO:0016491,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0051744,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
Ec32 ortholog description3,8-divinyl protochlorophyllide a 8-vinyl reductase, putative chloroplast precursor
Ec32 orthologEc-15_004140.1
EC1.3.1.75
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927974.4077654-CDS-E-fasciculatus_F_contig14947:33..2251622927974.4077654-CDS-E-fasciculatus_F_contig14947:33..225Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14947 34..225 +
1695995774.2952893-CDS-E-fasciculatus_F_contig14947:33..2251695995774.2952893-CDS-E-fasciculatus_F_contig14947:33..225Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14947 34..225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14947.3510.1prot_E-fasciculatus_F_contig14947.3510.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14947 34..225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14947.3510.1

>prot_E-fasciculatus_F_contig14947.3510.1 ID=prot_E-fasciculatus_F_contig14947.3510.1|Name=mRNA_E-fasciculatus_F_contig14947.3510.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp
QSWQLFEAVGKEPKILKVPVLLFDVIIGALDILAGILPKQFEDPAELAKI
GKYYAVEDMLTVDP
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mRNA from alignment at E-fasciculatus_F_contig14947:34..225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14947.3510.1 ID=mRNA_E-fasciculatus_F_contig14947.3510.1|Name=mRNA_E-fasciculatus_F_contig14947.3510.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=192bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14947:34..225+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAATCATGGCAGCTCTTCGAAGCCGTGGGCAAGGAGCCCAAGATCCTCAA
GGTGCCCGTCCTCCTGTTCGACGTCATCATCGGGGCGTTGGATATCTTGG
CCGGCATCTTGCCGAAGCAGTTCGAGGACCCCGCCGAGCTGGCCAAGATC
GGGAAGTACTACGCCGTGGAGGACATGCTCACGGTCGACCCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14947:34..225+

>mRNA_E-fasciculatus_F_contig14947.3510.1 ID=mRNA_E-fasciculatus_F_contig14947.3510.1|Name=mRNA_E-fasciculatus_F_contig14947.3510.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14947:34..225+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAATCATGGCAGCTCTTCGAAGCCGTGGGCAAGGAGCCCAAGATCCTCAA
GGTGCCCGTCCTCCTGTTCGACGTCATCATCGGGGCGTTGGATATCTTGG
CCGGCATCTTGCCGAAGCAGTTCGAGGACCCCGCCGAGCTGGCCAAGATC
GGGAAGTACTACGCCGTGGAGGACATGCTCACGGTCGACCCTCAATCATG
GCAGCTCTTCGAAGCCGTGGGCAAGGAGCCCAAGATCCTCAAGGTGCCCG
TCCTCCTGTTCGACGTCATCATCGGGGCGTTGGATATCTTGGCCGGCATC
TTGCCGAAGCAGTTCGAGGACCCCGCCGAGCTGGCCAAGATCGGGAAGTA
CTACGCCGTGGAGGACATGCTCACGGTCGACCCT
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