mRNA_E-fasciculatus_F_contig14946.3509.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14946.3509.1
Unique NamemRNA_E-fasciculatus_F_contig14946.3509.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14946.3509.1 vs. uniprot
Match: A0A6H5KW90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW90_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.670e-25
Identity = 76/198 (38.38%), Postives = 97/198 (48.99%), Query Frame = 3 
Query:  216 LDLGNDSDYRVSYWVLQEDKVKATAIHERVLKTIEGSLNANLG-GKDGVTA-------------------------GAGVIARREAE----VTRELSEVPYFLTRDHRIDPPLPEHLLSCQPSFGPTPSAHAVVSFPKVMTRTKVYFPKGCKHLRVYAFFQRKDDNKWVQYKDKVYSIDNGKKIYALDATNVGIAPYL 719
            +++ N+SDY+VSYWV QE K+K  A+ E V+ T++  LN     G DG                            GA V A + A+    V  E +EV YFL +DHR++P             G  P              T VYFP+GCK+LRVYAFFQ KD   W  YKDKVYSI+  K+ Y L A NV I PY+
Sbjct:   18 INVANNSDYKVSYWVEQECKMKTRAVQETVVSTMDTKLNGKAKIGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAEVRAAKRAKTEKTVCTEKTEVSYFLMKDHRMEP-----------RRGTPP--------------TTVYFPEGCKNLRVYAFFQAKDGQTWKSYKDKVYSINGRKREYTLTALNVNIKPYI 190
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BLAST of mRNA_E-fasciculatus_F_contig14946.3509.1 vs. uniprot
Match: D8LS15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS15_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 5.830e-17
Identity = 53/127 (41.73%), Postives = 64/127 (50.39%), Query Frame = 3 
Query:  342 GGKDGVTAGAGVIARREAEVTRELSE-VPYFLTRDHRIDPPLPEHLLSCQPSFGPTPSAHAVVSFPKVMTRTKVYFPKGCKHLRVYAFFQRKDDNKWVQYKDKVYSIDNGKKIYALDATNVGIAPYL 719
            GG  G    A   A+ E  V  E +E V YFL +DHR++P             G  P              T VYFP+GCK+LRVYAFFQ KD   W  YKDKVYS++  K+ Y L A N  I PY+
Sbjct:    7 GGWPGAEVRAAKRAKTEKTVCTEKTEMVSYFLMKDHRMEP-----------RRGTPP--------------TTVYFPEGCKNLRVYAFFQAKDGQTWKSYKDKVYSVNGRKREYTLTALNANIKPYI 108
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BLAST of mRNA_E-fasciculatus_F_contig14946.3509.1 vs. uniprot
Match: D8LMN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMN6_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 3.320e-12
Identity = 56/171 (32.75%), Postives = 79/171 (46.20%), Query Frame = 3 
Query:  210 AGLDLGNDSDYRVSYWVLQEDKVKATAIHERVLKTIEGSLNANLGGKDGVTAGAGVIARREAEVTRELS-EVPYFLTRDHRIDPPLPEHLLSCQPSFGPTPSAHAVVSFPKVMTRTKVYFPKGCKHLRVYAFFQRKDDNKWVQYKDKVYSIDNGK-KIYALDATNVGIAPY 716
            A L+L N+SDYRVSYWV+ EDK+   A+  RV + IE  LN   GG     A           +  E + +  YFL RD+R                            P   T  K+ FPKG + LRVYA+   +   +W  ++DKV+  DNG+ K + +  TN  + P+
Sbjct:   31 AKLELRNESDYRVSYWVVNEDKLTTAAVKRRVFRNIEDQLND--GGSYRTNAKHHNAKHGWDVINAEHALDDEYFLRRDYR----------------------------PDAATAKKLRFPKGSRQLRVYAYAWFEKQKEWRVFRDKVF--DNGRGKRFRISTTNQCVEPF 169
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14946.3509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW90_9PHAE1.670e-2538.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS15_ECTSI5.830e-1741.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMN6_ECTSI3.320e-1232.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14946contigE-fasciculatus_F_contig14946:621..2576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1488
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14946.3509.1prot_E-fasciculatus_F_contig14946.3509.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14946 1855..2445 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927974.3284593-UTR-E-fasciculatus_F_contig14946:620..13751622927974.3284593-UTR-E-fasciculatus_F_contig14946:620..1375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14946 621..1375 -
1695995774.2462428-UTR-E-fasciculatus_F_contig14946:620..13751695995774.2462428-UTR-E-fasciculatus_F_contig14946:620..1375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14946 621..1375 -
1622927974.3407948-UTR-E-fasciculatus_F_contig14946:1843..18541622927974.3407948-UTR-E-fasciculatus_F_contig14946:1843..1854Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14946 1844..1854 -
1695995774.2582142-UTR-E-fasciculatus_F_contig14946:1843..18541695995774.2582142-UTR-E-fasciculatus_F_contig14946:1843..1854Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14946 1844..1854 -
1622927974.3652947-UTR-E-fasciculatus_F_contig14946:2445..25761622927974.3652947-UTR-E-fasciculatus_F_contig14946:2445..2576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14946 2446..2576 -
1695995774.2778106-UTR-E-fasciculatus_F_contig14946:2445..25761695995774.2778106-UTR-E-fasciculatus_F_contig14946:2445..2576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14946 2446..2576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927974.3536654-CDS-E-fasciculatus_F_contig14946:1854..24451622927974.3536654-CDS-E-fasciculatus_F_contig14946:1854..2445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14946 1855..2445 -
1695995774.2674406-CDS-E-fasciculatus_F_contig14946:1854..24451695995774.2674406-CDS-E-fasciculatus_F_contig14946:1854..2445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14946 1855..2445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14946.3509.1

>prot_E-fasciculatus_F_contig14946.3509.1 ID=prot_E-fasciculatus_F_contig14946.3509.1|Name=mRNA_E-fasciculatus_F_contig14946.3509.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=197bp
MGTCFSKHEQHLDRGTREGKPDRNNQAGLDLGNDSDYRVSYWVLQEDKVK
ATAIHERVLKTIEGSLNANLGGKDGVTAGAGVIARREAEVTRELSEVPYF
LTRDHRIDPPLPEHLLSCQPSFGPTPSAHAVVSFPKVMTRTKVYFPKGCK
HLRVYAFFQRKDDNKWVQYKDKVYSIDNGKKIYALDATNVGIAPYL*
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mRNA from alignment at E-fasciculatus_F_contig14946:621..2576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14946.3509.1 ID=mRNA_E-fasciculatus_F_contig14946.3509.1|Name=mRNA_E-fasciculatus_F_contig14946.3509.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1956bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14946:621..2576- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGTGTGTAAGAAGAGAGAACCAGGACGACCAGGACGGTGAGGACTCTG
TGCGTCTCTTCTGCTGCTCCTTCCGCCCCGATGGAAGTAGCATACGCCCC
CCATTGCTGTCGTTGACATAGCAACAAACCCATGGGTACCTGCTTCAGCA
AGCATGAACAACATTTAGACCGTGGCACCAGGGAAGGGAAACCAGATAGA
AACAACCAGGCTGGGCTTGACCTTGGAAACGACAGCGACTACCGCGTGTC
TTACTGGGTGCTGCAGGAGGACAAAGTAAAGGCCACGGCGATCCACGAGC
GGGTACTCAAAACGATAGAGGGATCCTTGAACGCAAACCTCGGAGGCAAG
GACGGGGTAACCGCAGGGGCCGGGGTCATCGCAAGAAGAGAGGCCGAGGT
CACGAGGGAGCTGTCGGAGGTGCCCTATTTTCTTACACGTGATCATCGGA
TAGACCCTCCTCTTCCAGAGCACTTGTTGTCCTGTCAGCCATCTTTTGGT
CCGACTCCGAGCGCTCACGCTGTTGTATCGTTTCCGAAAGTGATGACAAG
GACTAAAGTGTACTTTCCAAAGGGCTGCAAGCACTTGCGCGTGTACGCCT
TTTTCCAGAGAAAAGACGACAATAAGTGGGTTCAGTACAAGGACAAGGTC
TACTCCATCGACAATGGCAAGAAGATCTACGCTCTCGACGCCACCAATGT
GGGGATTGCGCCGTATCTGTAACGTCATGGCAGGTACATATGGCATGATT
TTCGTTGTCGTTGTCGTTGTCGTTGTCGTTTGTTCTTGTCGTTTTTGTTG
CTGTTGCTGTTGCTCCCCTTACCTTGACCCGAGTTCCCTGACTGCATGCT
TTATCCAGTAAATAAACCCGGCGAACGCTGCTGTTCTAAAAATTAGTATC
CCAAAAAAGGGTACATATGCTTACATCGATAATCTGGGCGCGGCAGGTGC
AAACTCTTCCCTCTTCTTCCTTTTGAGGAAGAAATTTTGGAGTGTTCTAG
GTAGAGACCGGCGTCAGACTCCTCCAGGTACCGAGTACGTCAATCCGCTC
CCTGCCGAAAATGGATACCTTGTTGTAGCAACCACACCTGTGCGCCCAAT
ACTTCTCCATGGTCAGTAATATATCATGGCTCTTCCCGCTCCTTGCGACC
CCACATCCCCATCCCCGCCCCCGCTCCCCTCCGATGTTACGCCTTCGACA
GTCACCTGTACGCAGCACGACGAGCAGACTTCCTAGTGTTCGTGCACATG
ACGGCAAATAGGGCCGGGATAAGGAGATTGGCATCCTCGTGGGAAACCCG
CCTGGGGTGTGTACTCAGTCACCAGACATATCTCGCCAATGTTTGCTTTC
AAGTTGTACGGCCAAGGGGTAAAGAGCCGTTGAAAGTCCCGAAATGGAGT
ACAAAATCGACGAGATAGTTTGCCAGAGGGGGGAAGTGGATATGCTTTAC
GACAGATGTTCCACTGCTTGCTGTGCACCTGTTCACGGGGCGGCCTACTT
TTATGTGTTTTGGTATCCTCTCCCTTGCAAGGACAACACTTCAGAGTAGC
TAACGTGTTGCGCCTCCCCTGCCCTCGTCTACTGTGTCTCCTTACGGATT
CCAGTCCTTCATACTCCAGGTCCATCTCCTGTGCGAGGGAACCATGATCA
TATTTTCAAAATGACTTGAGTGATAGGTTTGGTACTTGGTTGACAGCTAG
GCGAGTGCGGAGATGGGGTATGCAATGGGCGGGGGCACGGTTAGGTCTGT
TTACTTTCGTGCGCCTATTGTTAGTTTCTCCGCGGCGAAATATGGAAGGA
AACATTCGCGCGACAATCCCCATCCAGCTAGTGCTCTCCAGTTACCTTTG
CTGATTACAACGTCTTACGTAAGAAGTGTGATACTACAGAAATGGTGTGT
GCGAGGACGGAGCGTAACGCGCACAAGTGCCACGGGGTGTAAGATTTTTC
GGGAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14946:621..2576-

>mRNA_E-fasciculatus_F_contig14946.3509.1 ID=mRNA_E-fasciculatus_F_contig14946.3509.1|Name=mRNA_E-fasciculatus_F_contig14946.3509.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1182bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14946:621..2576- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTACCTGCTTCAGCAAGCATGAACAACATTTAGACCGTGGCACCAG
GGAAGGGAAACCAGATAGAAACAACCAGGCTGGGCTTGACCTTGGAAACG
ACAGCGACTACCGCGTGTCTTACTGGGTGCTGCAGGAGGACAAAGTAAAG
GCCACGGCGATCCACGAGCGGGTACTCAAAACGATAGAGGGATCCTTGAA
CGCAAACCTCGGAGGCAAGGACGGGGTAACCGCAGGGGCCGGGGTCATCG
CAAGAAGAGAGGCCGAGGTCACGAGGGAGCTGTCGGAGGTGCCCTATTTT
CTTACACGTGATCATCGGATAGACCCTCCTCTTCCAGAGCACTTGTTGTC
CTGTCAGCCATCTTTTGGTCCGACTCCGAGCGCTCACGCTGTTGTATCGT
TTCCGAAAGTGATGACAAGGACTAAAGTGTACTTTCCAAAGGGCTGCAAG
CACTTGCGCGTGTACGCCTTTTTCCAGAGAAAAGACGACAATAAGTGGGT
TCAGTACAAGGACAAGGTCTACTCCATCGACAATGGCAAGAAGATCTACG
CTCTCGACGCCACCAATGTGGGGATTGCGCCGTATCTGTAAATGGGTACC
TGCTTCAGCAAGCATGAACAACATTTAGACCGTGGCACCAGGGAAGGGAA
ACCAGATAGAAACAACCAGGCTGGGCTTGACCTTGGAAACGACAGCGACT
ACCGCGTGTCTTACTGGGTGCTGCAGGAGGACAAAGTAAAGGCCACGGCG
ATCCACGAGCGGGTACTCAAAACGATAGAGGGATCCTTGAACGCAAACCT
CGGAGGCAAGGACGGGGTAACCGCAGGGGCCGGGGTCATCGCAAGAAGAG
AGGCCGAGGTCACGAGGGAGCTGTCGGAGGTGCCCTATTTTCTTACACGT
GATCATCGGATAGACCCTCCTCTTCCAGAGCACTTGTTGTCCTGTCAGCC
ATCTTTTGGTCCGACTCCGAGCGCTCACGCTGTTGTATCGTTTCCGAAAG
TGATGACAAGGACTAAAGTGTACTTTCCAAAGGGCTGCAAGCACTTGCGC
GTGTACGCCTTTTTCCAGAGAAAAGACGACAATAAGTGGGTTCAGTACAA
GGACAAGGTCTACTCCATCGACAATGGCAAGAAGATCTACGCTCTCGACG
CCACCAATGTGGGGATTGCGCCGTATCTGTAA
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