mRNA_E-fasciculatus_F_contig14938.3507.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14938.3507.1
Unique NamemRNA_E-fasciculatus_F_contig14938.3507.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14938.3507.1 vs. uniprot
Match: D7FX33_ECTSI (Serine/threonine protein kinase with WD40 repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX33_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 2.200e-69
Identity = 148/218 (67.89%), Postives = 160/218 (73.39%), Query Frame = -3 
Query:    2 RFLRSPPPTAGRGGSPFSWRTRTVWR*V-----ESMRVPSRTRLPSPPXXXXXXXXXXXXX----VARNSGSEDAAFTVSGVSAIDVFGTNSSADISRQQGELSSHAGSVRLFSGAEAAGASDGLLPLLSGGECSTGGSRQARGGEGESTVDAEGWSEPVAAGHASVEGIVDGSSNGGEDAGALSAVDATLTLTPAI---VAEEGPTGGGTFGEDWGV 619
            RFLRSP PTAGRG SPFSWRTRTVWR       + + VP  + +PS                   VA +SG EDA+FT+SGVS IDV GTNSS D S+ QG LSS+A SVRLFSGAE AGAS+GLLPLLSGGECST GSRQ+RGGEGE TVDAEGWSEPV  G ASVEGI DG  NG EDAG LSAVD TLTLTPA+   VAEEGPTGGGTF EDWGV
Sbjct:  546 RFLRSPLPTAGRGASPFSWRTRTVWREDTRPEGDDISVPD-SWMPSDDGSSLALAVGAATSGQDGVAHDSGPEDASFTISGVSTIDVVGTNSSVDTSQHQGALSSNACSVRLFSGAEGAGASNGLLPLLSGGECSTSGSRQSRGGEGEETVDAEGWSEPVVTGGASVEGI-DG--NGNEDAGTLSAVDVTLTLTPAVPAMVAEEGPTGGGTFDEDWGV 759
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BLAST of mRNA_E-fasciculatus_F_contig14938.3507.1 vs. uniprot
Match: A0A6H5JJE3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJE3_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 5.010e-44
Identity = 111/156 (71.15%), Postives = 120/156 (76.92%), Query Frame = -3 
Query:    2 VARNSGSEDAAFT-VSGVSAIDV-FGTNSSADISRQQGELSSHAGSVRLFSGAEAAGASDGLL-PLLSGGECSTGGSRQARGGEGESTVDAEGWSEPVAAGHASVEGIVDGSSNGGEDAGALSAVDATLTLTPAI---VAEEGPTGGGTFGEDWGV 451
            VA +SGSEDA  T +S VS IDV  G NS ADIS+QQ ELSS+AGSVR FS A AAGASDGLL PLLSGG C TGGSRQARG +GE+TVDAEGWSEPV  G ASVE + D   NG  DA A SAVD TLTLTPA+   V+EEGPTGGGTFGE W V
Sbjct:  771 VAHSSGSEDAWSTGISSVSGIDVAVGINSGADISQQQVELSSNAGSVRFFSRAGAAGASDGLLLPLLSGGGCGTGGSRQARGEDGEATVDAEGWSEPVVTGCASVEDVDD---NGNADACASSAVDVTLTLTPAVPAMVSEEGPTGGGTFGEHWAV 923
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BLAST of mRNA_E-fasciculatus_F_contig14938.3507.1 vs. uniprot
Match: D7FX16_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX16_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 5.230e-34
Identity = 96/157 (61.15%), Postives = 103/157 (65.61%), Query Frame = -3 
Query:    2 VARNSGSEDAAFT----VSGVSAIDVFGTNSSADISRQQGELSSHAGSVRLFSGAEAAGASDGLLPLLSGGECSTGGSRQARGGEGESTVDAEGWSEPVAAGHASVEGIVDGSSNGGEDAGALSAVDATLTLTPAI---VAEEGPTGGGTFGEDWGV 451
            VA NSGSEDA  T    VSGV A    G NSSADIS+QQ   +   G                LLPL+SGG CST GSRQARG +GE+TVDAEGWSEPVA G  SVEGI+DG  NG  DAG  SAVD TLTLTPA+   VAEEGPTG GTFGE W V
Sbjct:  668 VAHNSGSEDAWSTGTNSVSGVDA--AVGINSSADISQQQVRWARPTGL---------------LLPLVSGGGCSTSGSRQARGDDGEATVDAEGWSEPVAVGCVSVEGIIDG--NGSADAGTSSAVDVTLTLTPAVSAMVAEEGPTGDGTFGEHWAV 805
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BLAST of mRNA_E-fasciculatus_F_contig14938.3507.1 vs. uniprot
Match: D7FI65_ECTSI (Protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI65_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 8.660e-18
Identity = 70/95 (73.68%), Postives = 76/95 (80.00%), Query Frame = -3 
Query:  188 VARNSGSEDAAFT-VSGV-SAIDV-FGTNSSADISRQQGELSSHAGSVRLFSGAEAA-GASDGLL--PLLSGGECSTGGSRQAR-GGEGESTVDA 451
            VAR+SG EDA  T +SGV S ID   G NSSADIS+QQGELSS AGSVR  +GAEAA G SDGLL  PLLSGGECSTG SRQ+R GGEGE+TVDA
Sbjct:  436 VARHSGPEDAWSTGISGVVSGIDAAVGINSSADISQQQGELSSSAGSVRFSTGAEAAAGESDGLLLLPLLSGGECSTGWSRQSRRGGEGEATVDA 530
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BLAST of mRNA_E-fasciculatus_F_contig14938.3507.1 vs. uniprot
Match: D7G3V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 5.890e-7
Identity = 42/76 (55.26%), Postives = 48/76 (63.16%), Query Frame = -3 
Query:    2 GEGESTVDAEGWSEPVAAGHASVEGIVDGSSNGGEDAG--ALSAVDATLTLTP---AIVAEEGPTGGGTFGEDWGV 214
            G G  TVDAEGWSEPVAA   SVEG+ DG+          AL AV+ TL LTP   A++AEEG + GG FGE W V
Sbjct:    2 GWGRRTVDAEGWSEPVAARGVSVEGV-DGNXXXXXXXXXCALIAVNVTLPLTPTIPALMAEEG-SAGGAFGEHWAV 75
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14938.3507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FX33_ECTSI2.200e-6967.89Serine/threonine protein kinase with WD40 repeats ... [more]
A0A6H5JJE3_9PHAE5.010e-4471.15Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FX16_ECTSI5.230e-3461.15Protein kinase domain-containing protein n=2 Tax=E... [more]
D7FI65_ECTSI8.660e-1873.68Protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
D7G3V6_ECTSI5.890e-755.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14938contigE-fasciculatus_F_contig14938:2257..3176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size783
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14938.3507.1prot_E-fasciculatus_F_contig14938.3507.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14938 2309..3039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927973.9428155-UTR-E-fasciculatus_F_contig14938:2256..23081622927973.9428155-UTR-E-fasciculatus_F_contig14938:2256..2308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14938 2257..2308 -
1695995773.976035-UTR-E-fasciculatus_F_contig14938:2256..23081695995773.976035-UTR-E-fasciculatus_F_contig14938:2256..2308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14938 2257..2308 -
1622927973.9946547-UTR-E-fasciculatus_F_contig14938:3039..31761622927973.9946547-UTR-E-fasciculatus_F_contig14938:3039..3176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14938 3040..3176 -
1695995774.0126164-UTR-E-fasciculatus_F_contig14938:3039..31761695995774.0126164-UTR-E-fasciculatus_F_contig14938:3039..3176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14938 3040..3176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927973.963848-CDS-E-fasciculatus_F_contig14938:2308..25881622927973.963848-CDS-E-fasciculatus_F_contig14938:2308..2588Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14938 2309..2588 -
1695995773.9861193-CDS-E-fasciculatus_F_contig14938:2308..25881695995773.9861193-CDS-E-fasciculatus_F_contig14938:2308..2588Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14938 2309..2588 -
1622927973.977579-CDS-E-fasciculatus_F_contig14938:2725..30391622927973.977579-CDS-E-fasciculatus_F_contig14938:2725..3039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14938 2726..3039 -
1695995773.995871-CDS-E-fasciculatus_F_contig14938:2725..30391695995773.995871-CDS-E-fasciculatus_F_contig14938:2725..3039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14938 2726..3039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14938.3507.1

>prot_E-fasciculatus_F_contig14938.3507.1 ID=prot_E-fasciculatus_F_contig14938.3507.1|Name=mRNA_E-fasciculatus_F_contig14938.3507.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=198bp
MPSTLACPAATGSDQPSASTVDSPSPPRACRLPPVLHSPPLSSGNSPSLA
PAASAPENSRTEPACEDSSPCCREMSALELVPKTSMAETPLTVNAASSEP
ELRATGGGVGGGAGGGGGGGDGKRVRDGTLMLSTHRHTVLVLQENGEPPR
PAVGGGERRNRFHGAPGRRHRPGRGQGKYRLYRQVIPGAAVSIRRRE*
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mRNA from alignment at E-fasciculatus_F_contig14938:2257..3176-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14938.3507.1 ID=mRNA_E-fasciculatus_F_contig14938.3507.1|Name=mRNA_E-fasciculatus_F_contig14938.3507.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=920bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14938:2257..3176- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACACCCCAGTCCTCGCCAAAGGTACCACCACCAGTCGGCCCCTCTTCC
GCCACAATCGCGGGTGTCAGGGTCAACGTCGCATCTACAGCGCTCAAGGC
GCCGGCATCCTCGCCACCGTTGCTGCTGCCGTCGACGATGCCTTCGACGC
TCGCATGTCCCGCCGCCACGGGCTCGGACCAACCCTCGGCATCCACCGTC
GACTCCCCCTCACCGCCTCGGGCCTGCCGGCTCCCGCCGGTGCTGCACTC
GCCCCCGCTGAGCAGCGGCAACAGTCCGTCGCTCGCGCCCGCCGCCTCTG
CCCCGGAGAACAGCCGAACAGAGCCCGCGTGTGAAGACAGCTCGCCCTGC
TGCCGGGAGATGTCGGCGCTTGAGTTGGTTCCGAAGACGTCAATGGCAGA
GACTCCGCTGACTGTGAACGCGGCGTCCTCCGAACCGGAGTTGCGCGCCA
CGTCGTCTTGCACGCTCGTAGCCGCACCGACGGCGAGAGCGTGAGACGAG
CCGCCGTCCGAGGGTATCCAAGAGTCTTGGACCGAGTCGTCGCCGCCCTC
GGGCCGTGTGTTCTCGCTGGCGGCGGCAATTGACGAAGTGGTGGTGGAGT
CGGTGGTGGAGCCGGCGGCGGCGGCGGTGGTGGCGACGGCAAGCGGGTCC
GGGACGGCACCCTCATGCTCTCCACTCACCGCCATACCGTCCTCGTCCTC
CAAGAGAACGGCGAGCCCCCCCGACCTGCTGTCGGAGGAGGAGAACGAAG
AAACCGATTCCACGGGGCCCCCGGTCGACGGCACCGACCCGGCCGAGGTC
AAGGGAAATACAGGCTGTACCGCCAAGTGATTCCCGGAGCTGCCGTCAGC
ATACGAAGACGAGAATGATTCCACGAAGCTCCCGGTCGATGGCGCCGACC
CGGCCGAGGTCAAGGGAAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14938:2257..3176-

>mRNA_E-fasciculatus_F_contig14938.3507.1 ID=mRNA_E-fasciculatus_F_contig14938.3507.1|Name=mRNA_E-fasciculatus_F_contig14938.3507.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1188bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14938:2257..3176- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTTCGACGCTCGCATGTCCCGCCGCCACGGGCTCGGACCAACCCTC
GGCATCCACCGTCGACTCCCCCTCACCGCCTCGGGCCTGCCGGCTCCCGC
CGGTGCTGCACTCGCCCCCGCTGAGCAGCGGCAACAGTCCGTCGCTCGCG
CCCGCCGCCTCTGCCCCGGAGAACAGCCGAACAGAGCCCGCGTGTGAAGA
CAGCTCGCCCTGCTGCCGGGAGATGTCGGCGCTTGAGTTGGTTCCGAAGA
CGTCAATGGCAGAGACTCCGCTGACTGTGAACGCGGCGTCCTCCGAACCG
GAGTTGCGCGCCACATGCCTTCGACGCTCGCATGTCCCGCCGCCACGGGC
TCGGACCAACCCTCGGCATCCACCGTCGACTCCCCCTCACCGCCTCGGGC
CTGCCGGCTCCCGCCGGTGCTGCACTCGCCCCCGCTGAGCAGCGGCAACA
GTCCGTCGCTCGCGCCCGCCGCCTCTGCCCCGGAGAACAGCCGAACAGAG
CCCGCGTGTGAAGACAGCTCGCCCTGCTGCCGGGAGATGTCGGCGCTTGA
GTTGGTTCCGAAGACGTCAATGGCAGAGACTCCGCTGACTGTGAACGCGG
CGTCCTCCGAACCGGAGTTGCGCGCCACTGGTGGTGGAGTCGGTGGTGGA
GCCGGCGGCGGCGGCGGTGGTGGCGACGGCAAGCGGGTCCGGGACGGCAC
CCTCATGCTCTCCACTCACCGCCATACCGTCCTCGTCCTCCAAGAGAACG
GCGAGCCCCCCCGACCTGCTGTCGGAGGAGGAGAACGAAGAAACCGATTC
CACGGGGCCCCCGGTCGACGGCACCGACCCGGCCGAGGTCAAGGGAAATA
CAGGCTGTACCGCCAAGTGATTCCCGGAGCTGCCGTCAGCATACGAAGAC
GAGAATGATGGTGGTGGAGTCGGTGGTGGAGCCGGCGGCGGCGGCGGTGG
TGGCGACGGCAAGCGGGTCCGGGACGGCACCCTCATGCTCTCCACTCACC
GCCATACCGTCCTCGTCCTCCAAGAGAACGGCGAGCCCCCCCGACCTGCT
GTCGGAGGAGGAGAACGAAGAAACCGATTCCACGGGGCCCCCGGTCGACG
GCACCGACCCGGCCGAGGTCAAGGGAAATACAGGCTGTACCGCCAAGTGA
TTCCCGGAGCTGCCGTCAGCATACGAAGACGAGAATGA
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