|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig14936.3505.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI) HSP 1 Score: 360 bits (923), Expect = 2.570e-108 Identity = 286/376 (76.06%), Postives = 295/376 (78.46%), Query Frame = 1
Query: 325 FSRGGAGPFFTPTPMAGPRPALARGGWASLSTSTAAATFVPPTPAPVAKEDGSDGGSHTAAVD-------------APGTTSPSDKA-AVSAGSPEAES--------SGSWWVNRPESVLRCLRELLLASSSLTK--------DGKRNGCDRTSGNGSADTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-QPKAQEDFAAGLRAGLLEELAGKMRLLLRAGLSAGGDAEGDDWGGVMRLEMGLEEYISLVEDVHRAVEWTTRQKHDSLMQQRKNSREDGLGKLKERLRRLESKRGAIRADLDRLRRRMVSKTDRIKTLRTLADECWAEGEPSIGRDTLDNLEVRGRRE 1359
FSRGGAGPFFTPTPMAGPRPALARGGWASL STAAATF A V KED AP T PSDKA AVSAGSP SG+WWVNRPESVLRCLRELL DGKR+G D+ SGNG+ADT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Q AQEDFAAGLR GLLE+LAGKMRLLLRAGLS GG+AEGD GGVMRLEMGLEEYISLVEDVHRAVE TTRQKHDSLMQ+RKNSREDGLGKLKERLRRLESKRG+IRADLDRLRRRMVSKTDRIKTLRTLADECWAEGEPSIGRDTLDNLE R+E
Sbjct: 493 FSRGGAGPFFTPTPMAGPRPALARGGWASLFASTAAATFXXXXXAAVVKEDXXXXXXXXXXXXXXXXXXXXXXXXXAPEATGPSDKAMAVSAGSPAPXXXXXXXXXXSGAWWVNRPESVLRCLRELLXXXXXXXXXXXXXXXXDGKRHGYDKRSGNGTADTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQANAQEDFAAGLRGGLLEQLAGKMRLLLRAGLSWGGNAEGDRGGGVMRLEMGLEEYISLVEDVHRAVERTTRQKHDSLMQERKNSREDGLGKLKERLRRLESKRGSIRADLDRLRRRMVSKTDRIKTLRTLADECWAEGEPSIGRDTLDNLEAMIRKE 868
BLAST of mRNA_E-fasciculatus_F_contig14936.3505.1 vs. uniprot
Match: A0A6H5JK20_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK20_9PHAE) HSP 1 Score: 325 bits (833), Expect = 1.340e-95 Identity = 238/361 (65.93%), Postives = 246/361 (68.14%), Query Frame = 1
Query: 325 FSRGGAGPFFTPTPMAGPRPALARGGWASLSTSTAAATFVPPTPAPVAKEDGSDGGSHTAAVDAPGTTSPSDKAAVSAGSPEAESSG---------SWWVNRPESVLRCLRELLLASSS--LTKDGKRNGCDRTSGNGSADTA-----AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPKAQEDFAAGLRAGLLEELAGKMRLLLRAGLSAGGDAEGDDWGGVMRLEMGLEEYISLVEDVHRAVEWTTRQKHDSLMQQRKNSREDGLGKLKERLRRLESKRGAIRADLDRLRRRMVSKTDRIKTLRTLADECWAEGEPSIGRDTLDNLEVRGRRE 1359
FSRGGAGPFFTPTPMAGPRPALA GGWASL STAA +WWVNRPESVLRCLRELLL+SSS +KDGKR+G DR +GNG+ADTA XXXXXXXXXXXXXXX XXXXXXXXXX AQEDFAAGLR GLLEELAGKMRLLLRAGLS GGDAEGD GVMRLEMGLEEYISLVEDVHRAVE TTRQKHDSLMQQRKNS+EDGLGKLKERLRRLESKRGAIRADLDRLRRRMVSKTDRIKTLRTLADECWAEGEPSIGRDTLDNLE R+E
Sbjct: 394 FSRGGAGPFFTPTPMAGPRPALASGGWASLFASTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWWVNRPESVLRCLRELLLSSSSPSSSKDGKRHGYDRRNGNGTADTADAXXXXXXXXXXXXXXXXXXXSLLLETAGGCGGTPSTSAGGAKASTVWQEXXXXXXXXXXXASAQEDFAAGLRGGLLEELAGKMRLLLRAGLSWGGDAEGDCGRGVMRLEMGLEEYISLVEDVHRAVERTTRQKHDSLMQQRKNSKEDGLGKLKERLRRLESKRGAIRADLDRLRRRMVSKTDRIKTLRTLADECWAEGEPSIGRDTLDNLEAMIRKE 754
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1359 |
| Cds size | 1359 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14936.3505.1 >prot_E-fasciculatus_F_contig14936.3505.1 ID=prot_E-fasciculatus_F_contig14936.3505.1|Name=mRNA_E-fasciculatus_F_contig14936.3505.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=453bp
GGGGGGGGAGSSTAAPAAPAVAAIAGMDRVAVSLRAPPAAAALLPGTGGD GGGGGGGDKQQRAAVPTPAAVTGVAAAGAEAAAGAAMPGSSSASGAKTSA SGGGGGGGFSRGGAGPFFTPTPMAGPRPALARGGWASLSTSTAAATFVPP TPAPVAKEDGSDGGSHTAAVDAPGTTSPSDKAAVSAGSPEAESSGSWWVN RPESVLRCLRELLLASSSLTKDGKRNGCDRTSGNGSADTAAVVASPPPPP PPPSSSSSALVSLLLETAGGGTPSTSAGGTKASTARQEQERRQKQQPKAQ EDFAAGLRAGLLEELAGKMRLLLRAGLSAGGDAEGDDWGGVMRLEMGLEE YISLVEDVHRAVEWTTRQKHDSLMQQRKNSREDGLGKLKERLRRLESKRG AIRADLDRLRRRMVSKTDRIKTLRTLADECWAEGEPSIGRDTLDNLEVRG RRE back to topmRNA from alignment at E-fasciculatus_F_contig14936:272..3161- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14936.3505.1 ID=mRNA_E-fasciculatus_F_contig14936.3505.1|Name=mRNA_E-fasciculatus_F_contig14936.3505.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2890bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14936:272..3161- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GGAGGAGGAGGTGGTGGTGGTGGTGCGGGGAGCTCGACGGCGGCACCGGC
GGCACCGGCGGTGGCCGCGATAGCGGGGATGGATCGCGTCGCCGTTTCCC
TGCGAGCGCCGCCGGCGGCGGCGGCTTTGTTGCCGGGTACCGGTGGCGAC
GGCGGCGGAGGAGGAGGCGGTGACAAGCAGCAGCGGGCCGCCGTGCCCAC
CCCTGCTGCGGTCACCGGCGTAGCCGCCGCCGGTGCGGAAGCAGCGGCGG
GGGCAGCGATGCCTGGTTCTTCTTCTGCCTCAGGGGCAAAGACTAGTGCT
AGCGGCGGCGGCGGCGGCGGCGGGTTCAGCCGCGGCGGTGCCGGGCCATT
CTTCACGCCAACGCCCATGGCGGGGCCCAGGCCGGCGCTCGCCAGGGGCG
GGTGGGCCTCCCTCTCCACGTCGACGGCCGCGGCGACGTTCGTTCCTCCT
ACTCCCGCCCCCGTTGCAAAAGAAGACGGCAGCGACGGCGGCAGCCACAC
AGCCGCCGTTGACGCGCCAGGGACGACGAGTCCGAGCGATAAGGCGGCCG
TTTCCGCCGGAAGCCCGGAGGCGGAGAGCTCGGGGTCTTGGTGGGTCAAC
CGGCCGGAGTCGGTGCTGAGGTGTCTGCGGGAGCTCCTCCTGGCCTCCTC
TTCCTTGACGAAGGACGGCAAGCGGAACGGCTGCGACAGGACAAGCGGCA
ACGGTAGCGCCGACACCGCCGCTGTAGTGGCGTCCCCGCCGCCGCCGCCG
CCGCCGCCTTCGTCATCATCCTCGGCGTTGGTTTCTCTCCTGCTGGAAAC
GGCCGGCGGCGGAACGCCGTCGACGTCCGCGGGAGGTACGAAAGCGTCGA
CCGCACGGCAGGAGCAGGAGCGGCGGCAGAAGCAGCAACCGAAAGCCCAA
GAAGACTTCGCTGCGGGGCTGAGGGCAGGTCTGCTGGAGGAGCTGGCCGG
GAAGATGAGGCTCTTGCTAAGGGCGGGACTGTCCGCGGGGGGCGACGCAG
AGGGAGATGATTGGGGGGGGGTGATGAGGCTTGAGATGGGGCTGGAGGAG
TACATCTCGCTGGTCGAGGACGTGCACCGCGCGGTGGAATGGACGACCAG
GCAAAAGTGAGTGAGGTATTTAGATACACAGGTACGTATACATACTTCGA
AGTAGTTTTTTAAAAGAAAAATACAAAAACAAACACAGAAAAACTACCCG
TTCGAGATATAACCACAATCGAAGGGGATGTGTTGAAGTCTTTACAGTGA
GTGGGCAGAAAACCGGCTGGTTACTGGGCTTATTTAGTGTCTATTTAGAC
TGTACACTGAATTTTCATCAGTGATGCCAGCAGGTGCCACGCACAAAAAC
ACTGCTGTAGATACATAGAGTTGCGTATTTATTCTGCTGTTGCTTTTATG
TTGTTTTTGTTGTTTTTACGAAGTACGGCAACGTACAACTTTTTAAGAAA
AAATTGAGGTGGATCACTCCCCTGTGTCTTGCTTGGACGGCGCATCTAGC
CCCCTGTTGGCTCGTTGAGGCCTTCCCCTCTTGATAGCCCCCTCATTGTA
GAACATCATCAGTGAAGGACATCGTCAGCGCGTGTAGAGAAGAAGTAGAG
TGCGGCTAGCTCAACGAATACAAGCCAAGCATGTTTTTTGTACCGTCCGT
ACTTGTGTTTTGTTTTGAGTTGAGGAGGAAGAAGAAAGCGGCTGTTATTG
TGACACGTAAAGTAGACCTACTCCCCCCCCCCAAAAATTGTACGAGAGAA
AAAATCGCATTTGCAATCTGCGACCAGAAAACATCTGAAAGATTCTGAGA
GTGTCGTGCATTCTTTATCTGTGCCCCCACCCCGTCCCCCCCCCACAGGC
ATGACAGCTTGATGCAGCAGAGGAAAAACAGCAGGGAGGACGGCCTAGGG
AAGCTGAAAGAACGCCTGCGACGGCTCGAGAGCAAGAGGTGGGGGTAGTG
TGTGTGACCGCTTGGCGTGTAACCTTTAACCTTGACGTGGCGTTGCTGCC
TCTTTTTTTTTTTTTTCTTAATATGACACACCGCTTTTCATGATCTCAGC
CACCAATAGAAACACACAAGCCGTGATGACACACAAGTACCAGGCGCTTT
CCAGCCCGATGGATCGATCGATCACGACGGGCTTCTGTATTCGGTGTTCA
CCTGTCTATCCATTTCTCCCCCGAGAAGGAAAAACACACGGACTCCCACA
GGGTGCCATGGTGATTATGCGGAGGGCGGGGCGACTCAGGTACTGGGCAA
CTCAAGCTTAAGGAGGTCTCGCGCGTGTTGTGTGCGTGTCGTGTCGAGAC
TTTCCTTACGGCCCCGCGCCACCTCTCGTTTGTCTTAAGTATTTTTCGTT
TTTTTTGTCGTCAGGGCTGTCTTTTTTTTTTTTTCTTTCTGGCTGGCCGG
GAGCGAGCTTAGAATGGGGAGCGTCTCTCTCCCAGGTTTGATCTTCTCGC
CCCCCCAGCGGCAGCACGTGACTTTGCAAACGAAACACGAGAGAGATTGT
TTTGGATGGTGCGCGCATTTTGCAAAGGGGTCATCCGTACTTTGGATGGT
GCGGGCATTTTGCAAAGGGGTCATCCGTACGACCTCCCTTTTGCTTTGTA
AGGATTGATTTGAGTCGGGCCTCCTACTGTTTGCCCCTCCGCGTGGATGA
AGTCACCCACCCTGCGTAGCCCCCCGCCACCTAAAAAGACATACGCTCCC
TCTCCCGCTTTCGCTCGGGGATAACAGGGGGGCGATACGCGCCGACCTCG
ACCGTCTCCGTCGTCGGATGGTGTCCAAGACCGACCGTATCAAGACCCTG
AGGACGCTCGCTGACGAGTGCTGGGCGGAGGGAGAACCGTCCATCGGACG
CGACACTCTCGACAACCTCGAGGTGAGGGGGAGACGAGAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14936:272..3161- >mRNA_E-fasciculatus_F_contig14936.3505.1 ID=mRNA_E-fasciculatus_F_contig14936.3505.1|Name=mRNA_E-fasciculatus_F_contig14936.3505.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2718bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14936:272..3161- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GGAGGAGGAGGTGGTGGTGGTGGTGCGGGGAGCTCGACGGCGGCACCGGC GGCACCGGCGGTGGCCGCGATAGCGGGGATGGATCGCGTCGCCGTTTCCC TGCGAGCGCCGCCGGCGGCGGCGGCTTTGTTGCCGGGTACCGGTGGCGAC GGCGGCGGAGGAGGAGGCGGTGACAAGCAGCAGCGGGCCGCCGTGCCCAC CCCTGCTGCGGTCACCGGCGTAGCCGCCGCCGGTGCGGAAGCAGCGGCGG GGGCAGCGATGCCTGGTTCTTCTTCTGCCTCAGGGGCAAAGACTAGTGCT AGCGGCGGCGGCGGCGGCGGCGGGTTCAGCCGCGGCGGTGCCGGGCCATT CTTCACGCCAACGCCCATGGCGGGGCCCAGGCCGGCGCTCGCCAGGGGCG GGTGGGCCTCCCTCTCCACGTCGACGGCCGCGGCGACGTTCGTTCCTCCT ACTCCCGCCCCCGTTGCAAAAGAAGACGGCAGCGACGGCGGCAGCCACAC AGCCGCCGTTGACGCGCCAGGGACGACGAGTCCGAGCGATAAGGCGGCCG TTTCCGCCGGAAGCCCGGAGGCGGAGAGCTCGGGGTCTTGGTGGGTCAAC CGGCCGGAGTCGGTGCTGAGGTGTCTGCGGGAGCTCCTCCTGGCCTCCTC TTCCTTGACGAAGGACGGCAAGCGGAACGGCTGCGACAGGACAAGCGGCA ACGGTAGCGCCGACACCGCCGCTGTAGTGGCGTCCCCGCCGCCGCCGCCG CCGCCGCCTTCGTCATCATCCTCGGCGTTGGTTTCTCTCCTGCTGGAAAC GGCCGGCGGCGGAACGCCGTCGACGTCCGCGGGAGGTACGAAAGCGTCGA CCGCACGGCAGGAGCAGGAGCGGCGGCAGAAGCAGCAACCGAAAGCCCAA GAAGACTTCGCTGCGGGGCTGAGGGCAGGTCTGCTGGAGGAGCTGGCCGG GAAGATGAGGCTCTTGCTAAGGGCGGGACTGTCCGCGGGGGGCGACGCAG AGGGAGATGATTGGGGGGGGGTGATGAGGCTTGAGATGGGGCTGGAGGAG TACATCTCGCTGGTCGAGGACGTGCACCGCGCGGTGGAATGGACGACCAG GCAAAAGGAGGAGGAGGTGGTGGTGGTGGTGCGGGGAGCTCGACGGCGGC ACCGGCGGCACCGGCGGTGGCCGCGATAGCGGGGATGGATCGCGTCGCCG TTTCCCTGCGAGCGCCGCCGGCGGCGGCGGCTTTGTTGCCGGGTACCGGT GGCGACGGCGGCGGAGGAGGAGGCGGTGACAAGCAGCAGCGGGCCGCCGT GCCCACCCCTGCTGCGGTCACCGGCGTAGCCGCCGCCGGTGCGGAAGCAG CGGCGGGGGCAGCGATGCCTGGTTCTTCTTCTGCCTCAGGGGCAAAGACT AGTGCTAGCGGCGGCGGCGGCGGCGGCGGGTTCAGCCGCGGCGGTGCCGG GCCATTCTTCACGCCAACGCCCATGGCGGGGCCCAGGCCGGCGCTCGCCA GGGGCGGGTGGGCCTCCCTCTCCACGTCGACGGCCGCGGCGACGTTCGTT CCTCCTACTCCCGCCCCCGTTGCAAAAGAAGACGGCAGCGACGGCGGCAG CCACACAGCCGCCGTTGACGCGCCAGGGACGACGAGTCCGAGCGATAAGG CGGCCGTTTCCGCCGGAAGCCCGGAGGCGGAGAGCTCGGGGTCTTGGTGG GTCAACCGGCCGGAGTCGGTGCTGAGGTGTCTGCGGGAGCTCCTCCTGGC CTCCTCTTCCTTGACGAAGGACGGCAAGCGGAACGGCTGCGACAGGACAA GCGGCAACGGTAGCGCCGACACCGCCGCTGTAGTGGCGTCCCCGCCGCCG CCGCCGCCGCCGCCTTCGTCATCATCCTCGGCGTTGGTTTCTCTCCTGCT GGAAACGGCCGGCGGCGGAACGCCGTCGACGTCCGCGGGAGGTACGAAAG CGTCGACCGCACGGCAGGAGCAGGAGCGGCGGCAGAAGCAGCAACCGAAA GCCCAAGAAGACTTCGCTGCGGGGCTGAGGGCAGGTCTGCTGGAGGAGCT GGCCGGGAAGATGAGGCTCTTGCTAAGGGCGGGACTGTCCGCGGGGGGCG ACGCAGAGGGAGATGATTGGGGGGGGGTGATGAGGCTTGAGATGGGGCTG GAGGAGTACATCTCGCTGGTCGAGGACGTGCACCGCGCGGTGGAATGGAC GACCAGGCAAAAGCATGACAGCTTGATGCAGCAGAGGAAAAACAGCAGGG AGGACGGCCTAGGGAAGCTGAAAGAACGCCTGCGACGGCTCGAGAGCAAG AGGCATGACAGCTTGATGCAGCAGAGGAAAAACAGCAGGGAGGACGGCCT AGGGAAGCTGAAAGAACGCCTGCGACGGCTCGAGAGCAAGAGGGGGGCGA TACGCGCCGACCTCGACCGTCTCCGTCGTCGGATGGTGTCCAAGACCGAC CGTATCAAGACCCTGAGGACGCTCGCTGACGAGTGCTGGGCGGAGGGAGA ACCGTCCATCGGACGCGACACTCTCGACAACCTCGAGGTGAGGGGGAGAC GAGAGGGGGGCGATACGCGCCGACCTCGACCGTCTCCGTCGTCGGATGGT GTCCAAGACCGACCGTATCAAGACCCTGAGGACGCTCGCTGACGAGTGCT GGGCGGAGGGAGAACCGTCCATCGGACGCGACACTCTCGACAACCTCGAG GTGAGGGGGAGACGAGAG back to top
|