mRNA_E-fasciculatus_F_contig14921.3501.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14921.3501.1
Unique NamemRNA_E-fasciculatus_F_contig14921.3501.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14921.3501.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.520e-15
Identity = 48/71 (67.61%), Postives = 51/71 (71.83%), Query Frame = 3 
Query:    3 TAMTNPGCVLQSMVFDAAEAAXXXXXXXXLGPLSSPELTAGSGGAGGST-ARKLSVAPSTSLRGLLSFFES 212
            TAMTNPGCVL+S+VFDAAEAA         GPLSSPELTAGS         RKL+VAPS SLRGL SFFES
Sbjct:  549 TAMTNPGCVLKSVVFDAAEAAASAAEAAAPGPLSSPELTAGSXXXXXXXXTRKLTVAPSASLRGLFSFFES 619
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14921.3501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8H8_9PHAE3.520e-1567.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14921contigE-fasciculatus_F_contig14921:2119..2843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14921.3501.1prot_E-fasciculatus_F_contig14921.3501.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14921 2119..2821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927972.6752183-CDS-E-fasciculatus_F_contig14921:2118..24021622927972.6752183-CDS-E-fasciculatus_F_contig14921:2118..2402Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14921 2119..2402 -
1695995773.5706718-CDS-E-fasciculatus_F_contig14921:2118..24021695995773.5706718-CDS-E-fasciculatus_F_contig14921:2118..2402Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14921 2119..2402 -
1622927972.7256222-CDS-E-fasciculatus_F_contig14921:2808..28211622927972.7256222-CDS-E-fasciculatus_F_contig14921:2808..2821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14921 2809..2821 -
1695995773.582378-CDS-E-fasciculatus_F_contig14921:2808..28211695995773.582378-CDS-E-fasciculatus_F_contig14921:2808..2821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14921 2809..2821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927972.7371495-UTR-E-fasciculatus_F_contig14921:2821..28431622927972.7371495-UTR-E-fasciculatus_F_contig14921:2821..2843Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14921 2822..2843 -
1695995773.5913935-UTR-E-fasciculatus_F_contig14921:2821..28431695995773.5913935-UTR-E-fasciculatus_F_contig14921:2821..2843Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14921 2822..2843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14921.3501.1

>prot_E-fasciculatus_F_contig14921.3501.1 ID=prot_E-fasciculatus_F_contig14921.3501.1|Name=mRNA_E-fasciculatus_F_contig14921.3501.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=99bp
MRAAEHGIRCRRSGGIGSGSVCTGTPELSGADGGKRRRRWQHGQEALRCA
EHLAARPALLLRVFGPLPAAPSASWRRDELRRVCLSRRRQRLQAALGRR
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mRNA from alignment at E-fasciculatus_F_contig14921:2119..2843-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14921.3501.1 ID=mRNA_E-fasciculatus_F_contig14921.3501.1|Name=mRNA_E-fasciculatus_F_contig14921.3501.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=725bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14921:2119..2843- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACCGCCATGACCAACCCCGGATGCGTGCTGCAGGTGCCTCTTGTGTCC
TTTCTTCGTTCGGTGGAAGGCAGGCCCCTTTGCGTTTTTGTGCGCTTGCC
CCCTGCATGTCTGCCGACCCACAGAATGTGACAGAGATTTGGCCCGATTA
GGGGGTATTGATGCACAAAGGCAGCTAGCAGGTTTGGCCGCGACCTTTCC
AGCGAAAAGGGGACCTTTGTTGACGTGGCAATTCTCAAGGGCTGCCACCG
GCCCTGTGCGCATGAGAAACGTGCGTCTCATCGAACCAGCCTTACGGTTC
TTATGCGTTGAAGAAAGCTTCTATCAAGGTGCTCGGGTGCCCCCCTGTCT
TTGTGGCATGGTTTTTTGCGTTTCTTTTTTTTGTTCACCCTTCACGCCAG
ACGCACACCATCTCGCGTGCGTTCGTGCGCATCACAAACAGAGCATGGTA
TTCGATGCCGCCGAAGCGGCGGCATCGGCAGCGGCAGCGTCTGCACTGGG
ACCCCTGAGCTCTCCGGAGCTGACGGCGGGAAGCGGCGGCGCCGGTGGCA
GCACGGCCAGGAAGCTCTCCGTTGCGCCGAGCACCTCGCTGCGCGGCCTG
CTCTCCTTCTTCGAGTCTTCGGCCCGCTCCCCGCCGCCCCCTCCGCCTCC
TGGCGACGAGACGAGCTTCGGAGAGTGTGCCTCAGCCGGCGGCGGCAGCG
GCTCCAGGCGGCGCTGGGGAGGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14921:2119..2843-

>mRNA_E-fasciculatus_F_contig14921.3501.1 ID=mRNA_E-fasciculatus_F_contig14921.3501.1|Name=mRNA_E-fasciculatus_F_contig14921.3501.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=594bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14921:2119..2843- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTGCTGCAGATGCGTGCTGCAGAGCATGGTATTCGATGCCGCCGAA
GCGGCGGCATCGGCAGCGGCAGCGTCTGCACTGGGACCCCTGAGCTCTCC
GGAGCTGACGGCGGGAAGCGGCGGCGCCGGTGGCAGCACGGCCAGGAAGC
TCTCCGTTGCGCCGAGCACCTCGCTGCGCGGCCTGCTCTCCTTCTTCGAG
TCTTCGGCCCGCTCCCCGCCGCCCCCTCCGCCTCCTGGCGACGAGACGAG
CTTCGGAGAGTGTGCCTCAGCCGGCGGCGGCAGCGGCTCCAGGCGGCGCT
GGGGAGGAGGAGCATGGTATTCGATGCCGCCGAAGCGGCGGCATCGGCAG
CGGCAGCGTCTGCACTGGGACCCCTGAGCTCTCCGGAGCTGACGGCGGGA
AGCGGCGGCGCCGGTGGCAGCACGGCCAGGAAGCTCTCCGTTGCGCCGAG
CACCTCGCTGCGCGGCCTGCTCTCCTTCTTCGAGTCTTCGGCCCGCTCCC
CGCCGCCCCCTCCGCCTCCTGGCGACGAGACGAGCTTCGGAGAGTGTGCC
TCAGCCGGCGGCGGCAGCGGCTCCAGGCGGCGCTGGGGAGGAGG
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