mRNA_E-fasciculatus_F_contig1492.3499.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1492.3499.1
Unique NamemRNA_E-fasciculatus_F_contig1492.3499.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1492.3499.1 vs. uniprot
Match: D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 1.630e-68
Identity = 118/138 (85.51%), Postives = 124/138 (89.86%), Query Frame = 1 
Query:    1 MGGSGGQHTGVTAAVVCGLFAVVAATAVARKWKSGGAKRRMMGNIASGREFIDTLSAEVAELEAAIALAAEASDLDTARKEHERKSREHDECVTQVLTHLDKCTGGGDIGVARKKQIHRAEALGLRISKILPGAPVDG 414
            M GS GQ+TGV AAVVCGL AV   TAVARKWKSGG KRRM+GNIASGREF+D LSAEVA+LEA IALAAEASDLDTARKE+ERKSREHDE VTQVLTHLDKCTGG +IGVARKKQIHRAE LGLRISKILPG PVDG
Sbjct:    1 MSGSLGQYTGVIAAVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVDG 138
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BLAST of mRNA_E-fasciculatus_F_contig1492.3499.1 vs. uniprot
Match: A0A6H5JHT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT5_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 4.570e-68
Identity = 119/138 (86.23%), Postives = 124/138 (89.86%), Query Frame = 1 
Query:    1 MGGSGGQHTGVTAAVVCGLFAVVAATAVARKWKSGGAKRRMMGNIASGREFIDTLSAEVAELEAAIALAAEASDLDTARKEHERKSREHDECVTQVLTHLDKCTGGGDIGVARKKQIHRAEALGLRISKILPGAPVDG 414
            M GS GQHTGV AAVV  L AV A TAVARKWKSGG+KRRM+GNIASGREFIDTLSAEVA+LEA IALAAEASDLDTAR+EHERKSREHDE VTQVLTHLDKCTGGG+I VARKKQIHRAEALGLRIS ILPG  VDG
Sbjct:    1 MSGSLGQHTGVIAAVVFALVAVAATTAVARKWKSGGSKRRMLGNIASGREFIDTLSAEVADLEATIALAAEASDLDTARQEHERKSREHDESVTQVLTHLDKCTGGGEISVARKKQIHRAEALGLRISNILPGGHVDG 138
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1492.3499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4A6_ECTSI1.630e-6885.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHT5_9PHAE4.570e-6886.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1492contigE-fasciculatus_F_contig1492:9328..12626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_001960.1
Exons4
Model size1398
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1492.3499.1prot_E-fasciculatus_F_contig1492.3499.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1492 9328..11645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927972.5471885-CDS-E-fasciculatus_F_contig1492:9327..94561622927972.5471885-CDS-E-fasciculatus_F_contig1492:9327..9456Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1492 9328..9456 +
1695995773.5032203-CDS-E-fasciculatus_F_contig1492:9327..94561695995773.5032203-CDS-E-fasciculatus_F_contig1492:9327..9456Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1492 9328..9456 +
1622927972.580045-CDS-E-fasciculatus_F_contig1492:9941..100551622927972.580045-CDS-E-fasciculatus_F_contig1492:9941..10055Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1492 9942..10055 +
1695995773.511594-CDS-E-fasciculatus_F_contig1492:9941..100551695995773.511594-CDS-E-fasciculatus_F_contig1492:9941..10055Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1492 9942..10055 +
1622927972.5941513-CDS-E-fasciculatus_F_contig1492:10515..106201622927972.5941513-CDS-E-fasciculatus_F_contig1492:10515..10620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1492 10516..10620 +
1695995773.5280447-CDS-E-fasciculatus_F_contig1492:10515..106201695995773.5280447-CDS-E-fasciculatus_F_contig1492:10515..10620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1492 10516..10620 +
1622927972.6138637-CDS-E-fasciculatus_F_contig1492:11576..116451622927972.6138637-CDS-E-fasciculatus_F_contig1492:11576..11645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1492 11577..11645 +
1695995773.5420349-CDS-E-fasciculatus_F_contig1492:11576..116451695995773.5420349-CDS-E-fasciculatus_F_contig1492:11576..11645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1492 11577..11645 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927972.628029-UTR-E-fasciculatus_F_contig1492:11645..126261622927972.628029-UTR-E-fasciculatus_F_contig1492:11645..12626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1492 11646..12626 +
1695995773.552549-UTR-E-fasciculatus_F_contig1492:11645..126261695995773.552549-UTR-E-fasciculatus_F_contig1492:11645..12626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1492 11646..12626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1492.3499.1

>prot_E-fasciculatus_F_contig1492.3499.1 ID=prot_E-fasciculatus_F_contig1492.3499.1|Name=mRNA_E-fasciculatus_F_contig1492.3499.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=139bp
MGGSGGQHTGVTAAVVCGLFAVVAATAVARKWKSGGAKRRMMGNIASGRE
FIDTLSAEVAELEAAIALAAEASDLDTARKEHERKSREHDECVTQVLTHL
DKCTGGGDIGVARKKQIHRAEALGLRISKILPGAPVDG*
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mRNA from alignment at E-fasciculatus_F_contig1492:9328..12626+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1492.3499.1 ID=mRNA_E-fasciculatus_F_contig1492.3499.1|Name=mRNA_E-fasciculatus_F_contig1492.3499.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3299bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1492:9328..12626+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGGGTCCGGGGGACAGCACACGGGTGTGACTGCGGCGGTCGTCTG
CGGCCTCTTTGCCGTTGTTGCTGCTACGGCTGTCGCCCGCAAGTGGAAGA
GTGGGGGGGCCAAGAGACGCATGATGGGGGTGAGCACAGGGAGGTATTGC
AGGCGGGAACGGTGCTACGTCACACCCCGTACTATGCGTAGTACAGCACT
GGCAGCAACAGCATGTAGTTTTGTATTTTCAAATGGTTGGGCGAATCGGG
GCGATTGCTCCGCTCCTATTAACAAGCAACCCACGACTCGCTGGCTGTCA
GTGCTGTCTTTCACCAAACAAACTCCTTTGTACGTGCTATTCCCCCCCCG
CTTATTCCGTCGCAGGCCACGGCTACGGCTGCTTTGGAAAACTGTTTCAC
ACATACAGCTTGGACATGTCTGCAGACCTTTTTGGAGATGCCATGACGGC
AACGATTGTTTCCGCGTGTTGTGGAGTCGATCACACACCCCGCGGTACAC
TGACCTTCGCTTGCTCGCTCGGTGCCTGCTCGTGAACCACTGATGTTCTG
TTGTACACTGACCTCGCTGCTGTTCCTGTTGCTCCTGTGTTATGGCCGCT
GCTGGTCGCTTCAGAACATAGCTAGCGGTCGCGAATTTATCGACACGCTC
TCGGCCGAGGTGGCGGAGCTGGAGGCTGCGATTGCTCTGGCCGCCGAGGC
TTCCGACTTGGACACTGCACGAAAAGAAGTAAGCCATGTTCGGATGTTTC
ACACAACTGCGTATGTTGGGGGTTCATGTCACGTCAGGAATTTTTGCGTT
TGAATCCAGGTGATTCGCAGCCGCCAGTCATTGTACCAGCTTCACGTTGC
TCCAAGCTATGTAGTAGCCAGGGAGGGCCCTTCAACGTTCACGTAGGTAT
TTGTGACGAAACAGGCCGGGGTTAGCCCTGTAGGATTGTTGCTGCTGCTG
GTGGTGTTGGTCCGTCCTTGTTCTTGTCCTTGTTCGTTGGGCCTAAAACA
GGGGTAGCGAAAAGGCGGCACAGATGATCTGTCTCTTCATCCCATTGTCT
CACGTTTCTGGGATACTGCACCTCGTCTCACCACAAGCCACCGTAAGCTT
TGAGCATCAAATACACACCCGCCCGTCCACTCGCCCTCCCCCCCCCGCTT
ATTCCCGCCGCGTCCCCTGTGTCCAAATCTCCACGAAGCACGAGAGAAAA
AGCAGAGAGCATGACGAGTGCGTGACTCAGGTGTTGACGCACCTGGATAA
GTGCACGGGGGGCGGCGATATCGGCGTCGCCCGGAAAAAGCAGGTGATAA
ATGAACCCAACCTCTTTCCTGCGAGAAAGCGCGGGACAAGGTAGAGCGTA
CACGGCGATACTGTGGTGGTGCGAGTCCGAACTGTTAGAATACTTCCATA
CGATGATGATGTCCACTTGGTTTGTTGTTTCGTCAGAACGGACTCAAGGG
CGAAAGGAACACAGAGATGATCCTGGGGGGACCCAGGTCAACGCCGCATG
ATCCTCGCAATTGCCGAACGTCTTACGGGTGGTGCAGACAGCTGTATAGA
CTTTATTTCGTGGTATTCCCCCGTGGAAGTACGTAGGGGTATCAGCTCTA
ACAACAGCGACACCAACAGCAATGACATACTCGGCTTTCGTGAGTCAGGA
GTGTTTCTGGGGGACAGTTTACCAGTCTCCCTTTCCGACCCGGGCAATCG
ATGCCGTTGCTCGCGCTAGTTAACCTATTGCCGCGCCATGGTGCGGTAGG
CAGCGGCCACGAGAGAAGCACATGAATTTGCCCGCCTGCTGCAACGCTTT
TTCGACCGACATAATCAAGGTTATCCGGGCTGGCCTCTTTAATGCAAGCA
TTTGTGCAACACATGCTCTGCGTTTTTGCTCATGTTTGGTCGGACAACGA
TTCTGCACTTGCACATGTATCCCAAGTGGCGCACTCGTGTCGTTTCTGCC
AACAGAAGGCGTTTTAGCTAACGTTTGAAAAATGCGAGGTGCGGAAATAC
CATTTGGTGGTGGTGGTGATGGTGGTGATGGTGCTGGTGCTGGTGCTGGT
GCTGGTGCTGACCCGCTCGCGAGCTCTACAAGTTGTCTCACAAGCACGGA
GTCACAAACATTCAACTTCCTCAAATCAACAAGTGAACGGCCGTTCCACC
AAAAATATTGTCGCGGGCGATGCACACAGCAGTACTAGTACAGTACAACC
CTTTTGTCGAGTGATTGATTTCTTCGTTGCCTCCGGCGTTGTTTGGCAGA
TCCATCGAGCAGAGGCGTTGGGGCTTCGCATCAGCAAAATTTTGCCTGGG
GCCCCCGTGGATGGATGATCAGAGGGAAAGGGGCGCCATGTGTCAGACTC
ATCTGCGTCTCCCCAGGATTTTCCAAGTCCGCCTGTTAGGCCTGTTAGGA
TAGACGGGGGCGTTTCTGCGTCTGCTCGTGTTTTGCATCGATTCCTTGGA
GGTCCATCATCAAGCGCTTGCTTTCTCAAACGTATCCTTGGAAAGGGTGC
ACAGCAGTACTGTTGTCTGTTGCTCTTAGTCGCTTTGGTCATGGGTGCTG
GCTGTGTTGTAAAGAACAAAGTTAGATTGTGGTGGATGGGTCTGGCATTT
TCAGGGTGGGAGGTGTAGGCCATGCTAGAGGATTACAGGGTAGCGAGGCT
TGACTGCATGTGCATAGACCAGCATTGACTTGAAGTCACGAGGGGAGTTT
AGAGGCCTAAATCGAGCCCGATGCCCCTCTCTCCCATTTAGAAAAGTGCG
TACATTCTGTGTGTTTTCCTGTCATTGTCGTTTACGCTCGTGCGCCGCCT
TTGGTCTGGCACCGGTGCCGTTTGCTTTATCCGTGTTGGTGCAGTTGTCA
TAACGTTTGGCTCTCTATCCCGCGAGGCTTTCGTCAAAGGCGTGAGCATC
ATTGGTATTTGCGTTAGGGTCCACCTTTGCGCCATACGAAAAAAACCTCG
TGCACATACTTCGTTGTCCTCTCGGGACCTGGATGCCCTTCTGTTTCAAG
TGTTCAACCTCAACCGGCCGTATCCCGCACTTTTAGCTCAAATTTGCAGG
TTCGCGGGCCGAACCCACCGGGAAACCCCTATATGGCTACTGATGGTGTC
CTACTGTTTTTTAGCAGCAAAACAGTTCGATCGGTTTGAGAACGGACGCG
ATTTCCCTGCCGTCGAGTGTGTTTTGGTCGTATCTGGTGCAGTCTAACTG
TTATTTTTCACTCCAAGTTTGATGTAGGGCGGAATTGGCGCACTCCTTCG
ACGTCAAGCAATCGTGGTGTGCACAGTTACTCTTAGAGTGAATTTCTTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1492:9328..12626+

>mRNA_E-fasciculatus_F_contig1492.3499.1 ID=mRNA_E-fasciculatus_F_contig1492.3499.1|Name=mRNA_E-fasciculatus_F_contig1492.3499.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1492:9328..12626+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGGGTCCGGGGGACAGCACACGGGTGTGACTGCGGCGGTCGTCTG
CGGCCTCTTTGCCGTTGTTGCTGCTACGGCTGTCGCCCGCAAGTGGAAGA
GTGGGGGGGCCAAGAGACGCATGATGGGGATGGGCGGGTCCGGGGGACAG
CACACGGGTGTGACTGCGGCGGTCGTCTGCGGCCTCTTTGCCGTTGTTGC
TGCTACGGCTGTCGCCCGCAAGTGGAAGAGTGGGGGGGCCAAGAGACGCA
TGATGGGGAACATAGCTAGCGGTCGCGAATTTATCGACACGCTCTCGGCC
GAGGTGGCGGAGCTGGAGGCTGCGATTGCTCTGGCCGCCGAGGCTTCCGA
CTTGGACACTGCACGAAAAGAAAACATAGCTAGCGGTCGCGAATTTATCG
ACACGCTCTCGGCCGAGGTGGCGGAGCTGGAGGCTGCGATTGCTCTGGCC
GCCGAGGCTTCCGACTTGGACACTGCACGAAAAGAACACGAGAGAAAAAG
CAGAGAGCATGACGAGTGCGTGACTCAGGTGTTGACGCACCTGGATAAGT
GCACGGGGGGCGGCGATATCGGCGTCGCCCGGAAAAAGCAGCACGAGAGA
AAAAGCAGAGAGCATGACGAGTGCGTGACTCAGGTGTTGACGCACCTGGA
TAAGTGCACGGGGGGCGGCGATATCGGCGTCGCCCGGAAAAAGCAGATCC
ATCGAGCAGAGGCGTTGGGGCTTCGCATCAGCAAAATTTTGCCTGGGGCC
CCCGTGGATGGATGAATCCATCGAGCAGAGGCGTTGGGGCTTCGCATCAG
CAAAATTTTGCCTGGGGCCCCCGTGGATGGATGA
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