mRNA_E-fasciculatus_F_contig14918.3496.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14918.3496.1
Unique NamemRNA_E-fasciculatus_F_contig14918.3496.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14918.3496.1 vs. uniprot
Match: D8LIH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH1_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.140e-30
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    1 MRTLQRALTSHQTDLFKLCQENQYTLSFLGAIDGAKPLEGGETDAGSAASAA--TTTGPSAKRMRVP 195
            MRTLQRALTSHQTDLFKLCQENQYTLSFLGAIDGAKP+ GGET A SAA+A+  TTTGPSAKRMRVP
Sbjct:    1 MRTLQRALTSHQTDLFKLCQENQYTLSFLGAIDGAKPVHGGETGADSAAAASETTTTGPSAKRMRVP 67
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BLAST of mRNA_E-fasciculatus_F_contig14918.3496.1 vs. uniprot
Match: A0A6H5LCN5_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCN5_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.170e-24
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 MRTLQRALTSHQTDLFKLCQENQYTLSFLGAIDGAKPLEGGETDAGSAASAA--TTTGPSAKRMRVP 195
            MRTLQRALTSHQTDLFKLCQENQYTLSFLG IDGAKP+ GGET A SAA+A+   TTGP AKRMRVP
Sbjct:  874 MRTLQRALTSHQTDLFKLCQENQYTLSFLGGIDGAKPVHGGETGADSAAAASGTVTTGPLAKRMRVP 940
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14918.3496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIH1_ECTSI3.140e-3088.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCN5_9PHAE2.170e-2483.58Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14918contigE-fasciculatus_F_contig14918:298..918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_003690.1
Exons2
Model size198
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927972.286414-CDS-E-fasciculatus_F_contig14918:297..4351622927972.286414-CDS-E-fasciculatus_F_contig14918:297..435Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14918 298..435 -
1695995773.340489-CDS-E-fasciculatus_F_contig14918:297..4351695995773.340489-CDS-E-fasciculatus_F_contig14918:297..435Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14918 298..435 -
1622927972.2999284-CDS-E-fasciculatus_F_contig14918:858..9181622927972.2999284-CDS-E-fasciculatus_F_contig14918:858..918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14918 859..918 -
1695995773.352852-CDS-E-fasciculatus_F_contig14918:858..9181695995773.352852-CDS-E-fasciculatus_F_contig14918:858..918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14918 859..918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14918.3496.1prot_E-fasciculatus_F_contig14918.3496.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14918 298..918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14918.3496.1

>prot_E-fasciculatus_F_contig14918.3496.1 ID=prot_E-fasciculatus_F_contig14918.3496.1|Name=mRNA_E-fasciculatus_F_contig14918.3496.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
MRTLQRALTSHQTDLFKLCQENQYTLSFLGAIDGAKPLEGGETDAGSAAS
AATTTGPSAKRMRVP*
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mRNA from alignment at E-fasciculatus_F_contig14918:298..918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14918.3496.1 ID=mRNA_E-fasciculatus_F_contig14918.3496.1|Name=mRNA_E-fasciculatus_F_contig14918.3496.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=621bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14918:298..918- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGACTCTCCAAAGAGCGCTCACGAGTCACCAGACTGACCTCTTCAA
GCTTTGCCAGGTATGTTTAATCTCTTTTTTTCACAAATATAACATCTCTT
CCACGAGTAGAAGAGTCAGGGATAGGTTAGCAATGGAGTCATGGCGTTGT
TTGATGACCAAACCTGTATTTCTACAGTTGTCTTTTTTTGTTGTTGCTGT
TGATATGGGTGCTGGTCATGCTTGTTGAGGCCTGTGTCTTGAGTCTTGGG
TGCTGGTCGGAAACGTTCGCACACGCCTACTTGCGGAAGATGGGGGCTGT
CTGGTAGAACTTACTCTTACGATCGAGGGTGCGATATTGGCTGGCGGACA
CGATGGTTTGTCGCATGCATAGATTGATGGGTTACGCACGCCAGAGGCAA
GCATATGATGCGGAAACACCGTTCGCTTTTTGTCTTTCCCCTTTTGTTTT
CGGCCTCTCTTGCCATGTGTACTCACTCCTCAGGAGAACCAGTATACACT
CAGCTTTCTGGGAGCGATAGATGGCGCGAAACCGTTAGAGGGCGGGGAGA
CTGATGCCGGTTCCGCAGCATCAGCAGCAACGACCACCGGTCCTTCGGCG
AAAAGAATGCGTGTGCCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14918:298..918-

>mRNA_E-fasciculatus_F_contig14918.3496.1 ID=mRNA_E-fasciculatus_F_contig14918.3496.1|Name=mRNA_E-fasciculatus_F_contig14918.3496.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14918:298..918- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGACTCTCCAAAGAGCGCTCACGAGTCACCAGACTGACCTCTTCAA
GCTTTGCCAGATGAGGACTCTCCAAAGAGCGCTCACGAGTCACCAGACTG
ACCTCTTCAAGCTTTGCCAGGAGAACCAGTATACACTCAGCTTTCTGGGA
GCGATAGATGGCGCGAAACCGTTAGAGGGCGGGGAGACTGATGCCGGTTC
CGCAGCATCAGCAGCAACGACCACCGGTCCTTCGGCGAAAAGAATGCGTG
TGCCGTGAGAGAACCAGTATACACTCAGCTTTCTGGGAGCGATAGATGGC
GCGAAACCGTTAGAGGGCGGGGAGACTGATGCCGGTTCCGCAGCATCAGC
AGCAACGACCACCGGTCCTTCGGCGAAAAGAATGCGTGTGCCGTGA
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