mRNA_E-fasciculatus_F_contig14904.3491.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14904.3491.1
Unique NamemRNA_E-fasciculatus_F_contig14904.3491.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14904.3491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14904contigE-fasciculatus_F_contig14904:1998..2817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size820
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14904.3491.1prot_E-fasciculatus_F_contig14904.3491.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14904 2324..2758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927971.7401516-UTR-E-fasciculatus_F_contig14904:1997..23231622927971.7401516-UTR-E-fasciculatus_F_contig14904:1997..2323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14904 1998..2323 +
1695995773.0978956-UTR-E-fasciculatus_F_contig14904:1997..23231695995773.0978956-UTR-E-fasciculatus_F_contig14904:1997..2323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14904 1998..2323 +
1622927971.7682064-UTR-E-fasciculatus_F_contig14904:2758..28171622927971.7682064-UTR-E-fasciculatus_F_contig14904:2758..2817Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14904 2759..2817 +
1695995773.1273303-UTR-E-fasciculatus_F_contig14904:2758..28171695995773.1273303-UTR-E-fasciculatus_F_contig14904:2758..2817Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14904 2759..2817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927971.7529972-CDS-E-fasciculatus_F_contig14904:2323..27581622927971.7529972-CDS-E-fasciculatus_F_contig14904:2323..2758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14904 2324..2758 +
1695995773.117023-CDS-E-fasciculatus_F_contig14904:2323..27581695995773.117023-CDS-E-fasciculatus_F_contig14904:2323..2758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14904 2324..2758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14904.3491.1

>prot_E-fasciculatus_F_contig14904.3491.1 ID=prot_E-fasciculatus_F_contig14904.3491.1|Name=mRNA_E-fasciculatus_F_contig14904.3491.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=145bp
MYLHKTTTKKGEGNTGRCVRADIPLCIEYGKSVRHSCVLVVKQGGGNKGG
GKEQHNTRDTKKTIHLNATRSLCCHSPAGFIYIYMPSAFLREPDRDSNIQ
APPRPNPCAITITVTKTPGSKYLGNNPKYHAHPGNHESMSPTRG*
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mRNA from alignment at E-fasciculatus_F_contig14904:1998..2817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14904.3491.1 ID=mRNA_E-fasciculatus_F_contig14904.3491.1|Name=mRNA_E-fasciculatus_F_contig14904.3491.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=820bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14904:1998..2817+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACAGGCTAACTTACCTTGAAAAGACTACATTTCATTGGCTCGTCCATGC
GAAGGACGGGGGTGGGTGGGGGTGCCGTTGCATTTGTGAAGCCCACGGCG
GGCCCCCTCGGGGGGCAAATTCATCCCTTACTCCTGGGGGTATAAAGCAC
GTGATTAGCCCTATCTAGAAGGCAACTGGTTTCTGTTTTTCGGTGGCAAA
CTCGCCACCTTTCGCCGTAGCTCCGGCCTACGAGTAGAGGACATTCCATG
GGATGGAGCAAAACACTTGATATTTATTGCCGCACGCTAGCACCAGAGAG
AAGAAAACAAGGAAAAAAGTAGCCTGATGTACTTACACAAAACGACGACA
AAAAAAGGGGAGGGGAACACGGGTCGATGTGTCCGGGCGGATATACCCCT
TTGTATAGAGTACGGGAAGAGCGTCCGCCACTCTTGTGTTCTTGTTGTAA
AGCAAGGGGGTGGCAACAAAGGGGGTGGCAAGGAGCAACACAACACACGA
GACACAAAAAAAACGATCCATTTAAACGCTACACGGTCCCTGTGCTGCCA
CTCTCCTGCCGGTTTCATATATATTTATATGCCGTCAGCATTCCTTAGAG
AACCAGACCGGGACTCAAACATACAAGCTCCGCCCCGGCCAAACCCGTGC
GCGATAACCATTACCGTCACAAAAACCCCGGGTTCAAAATATCTCGGAAA
TAACCCTAAGTACCACGCACATCCGGGAAACCACGAAAGCATGTCCCCCA
CGCGAGGTTAATGGTCTAACGACCACGGCATGCACTATGAGTACACCCCC
CCCCCCCCCCCAAAAATGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14904:1998..2817+

>mRNA_E-fasciculatus_F_contig14904.3491.1 ID=mRNA_E-fasciculatus_F_contig14904.3491.1|Name=mRNA_E-fasciculatus_F_contig14904.3491.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14904:1998..2817+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACTTACACAAAACGACGACAAAAAAAGGGGAGGGGAACACGGGTCG
ATGTGTCCGGGCGGATATACCCCTTTGTATAGAGTACGGGAAGAGCGTCC
GCCACTCTTGTGTTCTTGTTGTAAAGCAAGGGGGTGGCAACAAAGGGGGT
GGCAAGGAGCAACACAACACACGAGACACAAAAAAAACGATCCATTTAAA
CGCTACACGGTCCCTGTGCTGCCACTCTCCTGCCGGTTTCATATATATTT
ATATGCCGTCAGCATTCCTTAGAGAACCAGACCGGGACTCAAACATACAA
GCTCCGCCCCGGCCAAACCCGTGCGCGATAACCATTACCGTCACAAAAAC
CCCGGGTTCAAAATATCTCGGAAATAACCCTAAGTACCACGCACATCCGG
GAAACCACGAAAGCATGTCCCCCACGCGAGGTTAAATGTACTTACACAAA
ACGACGACAAAAAAAGGGGAGGGGAACACGGGTCGATGTGTCCGGGCGGA
TATACCCCTTTGTATAGAGTACGGGAAGAGCGTCCGCCACTCTTGTGTTC
TTGTTGTAAAGCAAGGGGGTGGCAACAAAGGGGGTGGCAAGGAGCAACAC
AACACACGAGACACAAAAAAAACGATCCATTTAAACGCTACACGGTCCCT
GTGCTGCCACTCTCCTGCCGGTTTCATATATATTTATATGCCGTCAGCAT
TCCTTAGAGAACCAGACCGGGACTCAAACATACAAGCTCCGCCCCGGCCA
AACCCGTGCGCGATAACCATTACCGTCACAAAAACCCCGGGTTCAAAATA
TCTCGGAAATAACCCTAAGTACCACGCACATCCGGGAAACCACGAAAGCA
TGTCCCCCACGCGAGGTTAA
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