mRNA_E-fasciculatus_F_contig1490.3488.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1490.3488.1
Unique NamemRNA_E-fasciculatus_F_contig1490.3488.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1490.3488.1 vs. uniprot
Match: D8LH02_ECTSI (Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH02_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 4.660e-56
Identity = 114/130 (87.69%), Postives = 118/130 (90.77%), Query Frame = 1 
Query:   46 LTRIEVGARYDLKDKRGHLAGEYFWESVEPEIRDEIVAILVACGWPHPXXXXXXXXXXXXXXXXXGSSGRHGGQRGRSTSAPPSRTASPRDERGAGAGGGRNGRAKRHSDGGEAAMKRLASDMMTLMKRR 435
            LTRIEVGARYD+KDKRGHLAGEYFW SV+PE RDEIVAILVACGWPHP XXXXXXXX  XXXXX GSSGRHGGQRGRSTSAPPSRTASPR++RG GAG   NGRAKRHSDGGEA MKRLASDMM LMKRR
Sbjct:  149 LTRIEVGARYDIKDKRGHLAGEYFWGSVDPETRDEIVAILVACGWPHPPXXXXXXXXLRXXXXXRGSSGRHGGQRGRSTSAPPSRTASPRNDRG-GAGXXXNGRAKRHSDGGEAGMKRLASDMMMLMKRR 277
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BLAST of mRNA_E-fasciculatus_F_contig1490.3488.1 vs. uniprot
Match: A0A6H5KJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ42_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 6.250e-51
Identity = 99/130 (76.15%), Postives = 103/130 (79.23%), Query Frame = 1 
Query:   46 LTRIEVGARYDLKDKRGHLAGEYFWESVEPEIRDEIVAILVACGWPHPXXXXXXXXXXXXXXXXXGSSGRHGGQRGRSTSAPPSRTASPRDERGAGAGGGRNGRAKRHSDGGEAAMKRLASDMMTLMKRR 435
            LTRIEVGARYD+KDKRGHLAGEYFWESVEPE RDEIVAIL ACGWPHP                 GS GRHGGQR RS SAPPSRTASPR++RG GAGGG +GRAK HSDGGEA MKRLASDMM LMKRR
Sbjct:  548 LTRIEVGARYDIKDKRGHLAGEYFWESVEPETRDEIVAILAACGWPHPPPPPRNISRLRGRGLGRGSCGRHGGQRERSPSAPPSRTASPRNDRG-GAGGGGHGRAKTHSDGGEAGMKRLASDMMMLMKRR 676
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1490.3488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH02_ECTSI4.660e-5687.69Ankyrin domain protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KJ42_9PHAE6.250e-5176.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1490contigE-fasciculatus_F_contig1490:142..579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue3.8e-46
Seed eggNOG ortholog2880.D8LH02
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-14_001250.1
Exons1
Model size438
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927971.2053547-CDS-E-fasciculatus_F_contig1490:141..5791622927971.2053547-CDS-E-fasciculatus_F_contig1490:141..579Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1490 142..579 +
1695995772.8649275-CDS-E-fasciculatus_F_contig1490:141..5791695995772.8649275-CDS-E-fasciculatus_F_contig1490:141..579Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1490 142..579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1490.3488.1prot_E-fasciculatus_F_contig1490.3488.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1490 142..579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1490.3488.1

>prot_E-fasciculatus_F_contig1490.3488.1 ID=prot_E-fasciculatus_F_contig1490.3488.1|Name=mRNA_E-fasciculatus_F_contig1490.3488.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=146bp
LFFACASGNTTVARYLTRIEVGARYDLKDKRGHLAGEYFWESVEPEIRDE
IVAILVACGWPHPPPPPRSNSRLRGRGSGRGSSGRHGGQRGRSTSAPPSR
TASPRDERGAGAGGGRNGRAKRHSDGGEAAMKRLASDMMTLMKRR*
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mRNA from alignment at E-fasciculatus_F_contig1490:142..579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1490.3488.1 ID=mRNA_E-fasciculatus_F_contig1490.3488.1|Name=mRNA_E-fasciculatus_F_contig1490.3488.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=438bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1490:142..579+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTTCTTCGCGTGCGCGAGCGGGAACACCACGGTGGCTCGCTACCTCAC
GCGAATCGAGGTCGGCGCCCGGTACGACCTTAAGGACAAGCGCGGCCACC
TCGCCGGGGAGTACTTCTGGGAGTCCGTCGAGCCCGAGATCAGGGACGAG
ATCGTCGCGATACTGGTGGCCTGCGGGTGGCCGCACCCGCCGCCGCCGCC
CCGAAGCAACTCGAGGTTGAGGGGCCGTGGGTCGGGCAGGGGGAGCAGCG
GCAGGCACGGGGGGCAACGCGGAAGGTCGACCAGCGCCCCCCCCTCGAGA
ACCGCGTCGCCTCGCGACGAGCGCGGCGCCGGCGCCGGGGGCGGCAGAAA
CGGCCGGGCGAAGAGACACAGCGACGGCGGCGAAGCGGCGATGAAACGCC
TGGCGAGCGACATGATGACGCTCATGAAGAGGCGTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1490:142..579+

>mRNA_E-fasciculatus_F_contig1490.3488.1 ID=mRNA_E-fasciculatus_F_contig1490.3488.1|Name=mRNA_E-fasciculatus_F_contig1490.3488.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1490:142..579+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTTCTTCGCGTGCGCGAGCGGGAACACCACGGTGGCTCGCTACCTCAC
GCGAATCGAGGTCGGCGCCCGGTACGACCTTAAGGACAAGCGCGGCCACC
TCGCCGGGGAGTACTTCTGGGAGTCCGTCGAGCCCGAGATCAGGGACGAG
ATCGTCGCGATACTGGTGGCCTGCGGGTGGCCGCACCCGCCGCCGCCGCC
CCGAAGCAACTCGAGGTTGAGGGGCCGTGGGTCGGGCAGGGGGAGCAGCG
GCAGGCACGGGGGGCAACGCGGAAGGTCGACCAGCGCCCCCCCCTCGAGA
ACCGCGTCGCCTCGCGACGAGCGCGGCGCCGGCGCCGGGGGCGGCAGAAA
CGGCCGGGCGAAGAGACACAGCGACGGCGGCGAAGCGGCGATGAAACGCC
TGGCGAGCGACATGATGACGCTCATGAAGAGGCGTTAGCTCTTCTTCGCG
TGCGCGAGCGGGAACACCACGGTGGCTCGCTACCTCACGCGAATCGAGGT
CGGCGCCCGGTACGACCTTAAGGACAAGCGCGGCCACCTCGCCGGGGAGT
ACTTCTGGGAGTCCGTCGAGCCCGAGATCAGGGACGAGATCGTCGCGATA
CTGGTGGCCTGCGGGTGGCCGCACCCGCCGCCGCCGCCCCGAAGCAACTC
GAGGTTGAGGGGCCGTGGGTCGGGCAGGGGGAGCAGCGGCAGGCACGGGG
GGCAACGCGGAAGGTCGACCAGCGCCCCCCCCTCGAGAACCGCGTCGCCT
CGCGACGAGCGCGGCGCCGGCGCCGGGGGCGGCAGAAACGGCCGGGCGAA
GAGACACAGCGACGGCGGCGAAGCGGCGATGAAACGCCTGGCGAGCGACA
TGATGACGCTCATGAAGAGGCGTTAG
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