mRNA_E-fasciculatus_F_contig149.3484.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig149.3484.1
Unique NamemRNA_E-fasciculatus_F_contig149.3484.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Match: A0A6H5JGY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY8_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 9.580e-60
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 1 
Query:    1 FPGSLLIRLGLGRDAVARHNPWEEMLMLSQQPATGTTPLTAAVTAEEDDGETPADVAAMAAGTVAQGVLGRKKPYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 372
            FPGSLLIRLGLG+DA+ARHNPWEEMLMLSQQPATGT  LTAAVTAE             AAGTVAQGVLG+KKPYCLRVHVFQCR LPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ
Sbjct:  783 FPGSLLIRLGLGKDAMARHNPWEEMLMLSQQPATGTAYLTAAVTAEXXXXXXXXXXXXXAAGTVAQGVLGQKKPYCLRVHVFQCRGLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 906
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BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Match: D8LKV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKV5_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 8.380e-59
Identity = 103/124 (83.06%), Postives = 104/124 (83.87%), Query Frame = 1 
Query:    1 FPGSLLIRLGLGRDAVARHNPWEEMLMLSQQPATGTTPLTAAVTAEEDDGETPADVAAMAAGTVAQGVLGRKKPYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 372
            FPGSLLIRLGLGRDAVARHNPWEEMLMLSQ                EDDGETPAD  A AAGTVA+GVLG KKPYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ
Sbjct:  898 FPGSLLIRLGLGRDAVARHNPWEEMLMLSQ----------------EDDGETPADTTATAAGTVARGVLGHKKPYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 1005
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BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Match: F0Y840_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y840_AURAN)

HSP 1 Score: 77.0 bits (188), Expect = 6.330e-14
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  217 KPYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 372
            KPYCLRV+V+Q R+LP+S+ +GLLDPY+KVRF G+K+KTK +  T  P +Y+
Sbjct:  900 KPYCLRVYVYQARNLPASDENGLLDPYVKVRFCGKKEKTKSQAMTTAPLWYE 951
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BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Match: A0A7S4E3W2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E3W2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.190e-13
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  214 KKPYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 372
            KKPY +RV+++Q R LP+S+ +GLLDPY+KVRF G KQKTK    T  P FY+
Sbjct:  904 KKPYAIRVYIYQARHLPASDENGLLDPYVKVRFCGNKQKTKKHDMTTSPLFYE 956
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BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Match: A0A7S3JRT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRT7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.040e-13
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  220 PYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 372
            PYCLRV+VFQ R LP+S+ +GLLDPY+KVRF G+K KTK    T  P FY+
Sbjct:  929 PYCLRVYVFQARHLPASDDNGLLDPYVKVRFCGKKDKTKIHSMTTAPLFYE 979
[Close]
BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Match: A0A7S3ZN25_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZN25_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.030e-12
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:  214 KKPYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 372
            K+P C+RV+V+Q R+LP + A GLLDPY+KVRF GRK+KT+    T +P FY+
Sbjct:  885 KRPCCVRVYVYQARNLPPATAEGLLDPYVKVRFCGRKEKTRAHAHTTNPLFYE 937
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BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Match: A0A7S3ZX99_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZX99_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.750e-11
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  220 PYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 372
            P+CLRV ++Q ++LP+S+ + LLDPY+KVRF G+K+KT+    T  P FY+
Sbjct:  552 PFCLRVFIYQAKELPASDQTSLLDPYVKVRFCGKKEKTRVHAMTTAPLFYE 602
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BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Match: A0A7S3ZXC3_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXC3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.790e-11
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  220 PYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 372
            P+CLRV ++Q ++LP+S+ + LLDPY+KVRF G+K+KT+    T  P FY+
Sbjct:  350 PFCLRVFIYQAKELPASDQTSLLDPYVKVRFCGKKEKTRVHAMTTAPLFYE 400
[Close]
BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Match: A0A7S3JRT3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRT3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.090e-10
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:  220 PYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQKTKHEGSTADPCFYQ 372
            PYC+RV+V+Q ++LPSS+  G+LD Y+KVRF G K KTK    T  P FY+
Sbjct:  940 PYCVRVYVYQAKNLPSSDEDGMLDAYVKVRFRGEKLKTKVASKTTAPLFYE 990
[Close]
BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Match: A0A6H5L7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.090e-8
Identity = 36/112 (32.14%), Postives = 57/112 (50.89%), Query Frame = 1 
Query:    1 FPGSLLIRLGLG--RDAVARHNPWEEMLMLSQQPATGTTPLTAAVTAEEDDGETPADVAAMAAGTVAQGVLGRKKPYCLRVHVFQCRDLPSSEASGLLDPYIKVRFMGRKQK 330
            FPGS+LIR+GLG     +   + W++ +                                       QG+L R++ Y LRVH++Q R+LPS+++SGL+DPY+KV+F+G  +K
Sbjct: 1251 FPGSVLIRMGLGPIESYITNKSKWKDEI---------------------------------------QGLL-RREAYELRVHLYQARNLPSADSSGLIDPYLKVKFLGEVEK 1322
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig149.3484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JGY8_9PHAE9.580e-6084.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKV5_ECTSI8.380e-5983.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0Y840_AURAN6.330e-1459.62Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4E3W2_9STRA2.190e-1358.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JRT7_9STRA4.040e-1362.75Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A7S3ZN25_9STRA1.030e-1256.60Hypothetical protein (Fragment) n=3 Tax=Pelagomona... [more]
A0A7S3ZX99_9STRA7.750e-1150.98Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S3ZXC3_9STRA7.790e-1150.98Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3JRT3_9STRA1.090e-1054.90Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6H5L7Z1_9PHAE2.090e-832.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig149contigE-fasciculatus_F_contig149:16305..17485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.1
Seed ortholog evalue9.7e-51
Seed eggNOG ortholog2880.D8LKV5
KEGG koko:K19949,ko:K22125,ko:K22127
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
Ec32 ortholog descriptionFerIin domain
Ec32 orthologEc-11_005710.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig149.3484.1prot_E-fasciculatus_F_contig149.3484.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig149 16305..17483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927970.48709-CDS-E-fasciculatus_F_contig149:16304..163941622927970.48709-CDS-E-fasciculatus_F_contig149:16304..16394Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig149 16305..16394 +
1695995772.3938453-CDS-E-fasciculatus_F_contig149:16304..163941695995772.3938453-CDS-E-fasciculatus_F_contig149:16304..16394Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig149 16305..16394 +
1622927970.514095-CDS-E-fasciculatus_F_contig149:16863..170761622927970.514095-CDS-E-fasciculatus_F_contig149:16863..17076Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig149 16864..17076 +
1695995772.403972-CDS-E-fasciculatus_F_contig149:16863..170761695995772.403972-CDS-E-fasciculatus_F_contig149:16863..17076Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig149 16864..17076 +
1622927970.5346901-CDS-E-fasciculatus_F_contig149:17414..174831622927970.5346901-CDS-E-fasciculatus_F_contig149:17414..17483Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig149 17415..17483 +
1695995772.4170043-CDS-E-fasciculatus_F_contig149:17414..174831695995772.4170043-CDS-E-fasciculatus_F_contig149:17414..17483Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig149 17415..17483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig149.3484.1

>prot_E-fasciculatus_F_contig149.3484.1 ID=prot_E-fasciculatus_F_contig149.3484.1|Name=mRNA_E-fasciculatus_F_contig149.3484.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp
FPGSLLIRLGLGRDAVARHNPWEEMLMLSQQPATGTTPLTAAVTAEEDDG
ETPADVAAMAAGTVAQGVLGRKKPYCLRVHVFQCRDLPSSEASGLLDPYI
KVRFMGRKQKTKHEGSTADPCFYQ
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mRNA from alignment at E-fasciculatus_F_contig149:16305..17485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig149.3484.1 ID=mRNA_E-fasciculatus_F_contig149.3484.1|Name=mRNA_E-fasciculatus_F_contig149.3484.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1181bp|location=Sequence derived from alignment at E-fasciculatus_F_contig149:16305..17485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCCAGGATCGTTGCTTATTCGGCTGGGGCTCGGGAGGGATGCCGTAGC
TCGACATAACCCTTGGGAAGAGATGCTAATGCTTTCTCAGGTGGGTGCGT
CAGGCACAGGCAGCGTGCTAGAATTGGAGACGGAGCCGGGACGCACACAC
CAGAGAAAAATCATAAAACATGCTCCCAGGCAATGAAGGAACGTGAGGAT
TATGTCGACGACCGGCAGTATCAGGCCGGTAGGGTTGGTCTCCGAATGAA
TTCGACAGTCACCAACGAAGAGTGAATATGTGCATTTTCCTCGTCATTTG
CAACATTTTCCCGCCATCCTGGTATGAATTCATATCTTGTCGCTTCGATC
GTGGCTCAGCATACAGGGGTTATTGGCCAGTGGGTTAAAATTTCATTCTT
TTGAGGGGCTTCTCCTTCCCCTTAATGTGACCACGGAAGGTCGTGTCTTG
AAGGGAAGAAACGGGCCACAAATACGTTGAACGTACAGATGACGACAACA
GCAACCGCACCACCACCAACAGCAACACTAACGAAAGAAACCAAAATCTT
CTCCCGCAGCAACCCGCTACCGGGACAACACCCCTAACCGCTGCTGTCAC
CGCGGAGGAAGACGATGGCGAGACGCCGGCGGACGTCGCGGCAATGGCGG
CCGGAACGGTGGCGCAGGGAGTGCTAGGGCGAAAGAAGCCGTATTGCCTC
AGGGTGCACGTGTTCCAGTGCCGGGACCTGCCTAGCTCGGAAGCAAGCGG
ACTTCTCGACCCGTACATCAAGGTCGGTTGCCGTTGGAATTGGTGGATGG
CTGCCGCTTGGGTAATACTCCCGTGCGTTCGATGATAGCGTGATTCAGGC
CCGGCCTGCGGTTCTCTACTAACATCGAGAGGTGCATGACCTCTGTAGCT
TCCGGGATATATTTCCTGGCGAAGCAGTCTGCCTCGCTACACCTATTTCA
CGTCTTGGCTTCATTTTCTCCTGGTACATCCTGCTCAGGTGGAGACAGAC
AGTCCGGCTTGAGCGATACTTTCCTGATGAAAACTTGATGGATGAGAACG
AATTAATTTCAAATCGACTTGGCGAACGTCGCCTTGAAACGGATGGATAC
GAAACAATAGGTGCGATTCATGGGCCGCAAGCAGAAAACTAAGCACGAGG
GCAGCACCGCTGATCCATGCTTCTACCAGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig149:16305..17485+

>mRNA_E-fasciculatus_F_contig149.3484.1 ID=mRNA_E-fasciculatus_F_contig149.3484.1|Name=mRNA_E-fasciculatus_F_contig149.3484.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig149:16305..17485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCCAGGATCGTTGCTTATTCGGCTGGGGCTCGGGAGGGATGCCGTAGC
TCGACATAACCCTTGGGAAGAGATGCTAATGCTTTCTCAGTTCCCAGGAT
CGTTGCTTATTCGGCTGGGGCTCGGGAGGGATGCCGTAGCTCGACATAAC
CCTTGGGAAGAGATGCTAATGCTTTCTCAGCAACCCGCTACCGGGACAAC
ACCCCTAACCGCTGCTGTCACCGCGGAGGAAGACGATGGCGAGACGCCGG
CGGACGTCGCGGCAATGGCGGCCGGAACGGTGGCGCAGGGAGTGCTAGGG
CGAAAGAAGCCGTATTGCCTCAGGGTGCACGTGTTCCAGTGCCGGGACCT
GCCTAGCTCGGAAGCAAGCGGACTTCTCGACCCGTACATCAAGCAACCCG
CTACCGGGACAACACCCCTAACCGCTGCTGTCACCGCGGAGGAAGACGAT
GGCGAGACGCCGGCGGACGTCGCGGCAATGGCGGCCGGAACGGTGGCGCA
GGGAGTGCTAGGGCGAAAGAAGCCGTATTGCCTCAGGGTGCACGTGTTCC
AGTGCCGGGACCTGCCTAGCTCGGAAGCAAGCGGACTTCTCGACCCGTAC
ATCAAGGTGCGATTCATGGGCCGCAAGCAGAAAACTAAGCACGAGGGCAG
CACCGCTGATCCATGCTTCTACCAGGTGCGATTCATGGGCCGCAAGCAGA
AAACTAAGCACGAGGGCAGCACCGCTGATCCATGCTTCTACCAG
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