mRNA_E-fasciculatus_F_contig14889.3478.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14889.3478.1
Unique NamemRNA_E-fasciculatus_F_contig14889.3478.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Match: A0A835ZEK6_9STRA (Cytochrome c oxidase assembly protein CtaG/Cox11-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.190e-31
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    7 PSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEHAVPE 210
            P  AGIYFNKIQCFCFEEQRL++GEEIDMPV FF+DPEMLDDPAMD+V+++TLSYTFF+T EE AV E
Sbjct:  161 PLKAGIYFNKIQCFCFEEQRLKAGEEIDMPVLFFIDPEMLDDPAMDNVSDITLSYTFFKTGEEDAVEE 228
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BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Match: A0A7S2V6J6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6J6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 8.980e-29
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    7 PSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQT 186
            P LAG++FNKIQCFCFEEQRL++GEEIDMPVFFF+DPE LDDPAM  VN +TLSYTFF+T
Sbjct:  100 PPLAGVHFNKIQCFCFEEQRLKAGEEIDMPVFFFIDPEFLDDPAMAKVNEITLSYTFFKT 159
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BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Match: A0A485LJQ5_9STRA (Aste57867_22012 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJQ5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.120e-28
Identity = 48/60 (80.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    7 PSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQT 186
            P  AG+YFNKIQCFCFEEQRL++GEEIDMPVFFF+DPEM+DDP+M +V+N+TLSYTFFQT
Sbjct:  154 PPKAGLYFNKIQCFCFEEQRLKAGEEIDMPVFFFIDPEMVDDPSMHNVSNITLSYTFFQT 213
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BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Match: A0A482RTI3_9ARCH (Cytochrome c oxidase assembly protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTI3_9ARCH)

HSP 1 Score: 110 bits (274), Expect = 6.030e-28
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    7 PSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEHAVP 207
            P  AG+YFNKIQCFCFEEQRL + EE+DMPVFFF+DP+  DDPAMD+VN++TLSYTFF+T +E A P
Sbjct:  156 PPKAGLYFNKIQCFCFEEQRLGAYEEVDMPVFFFIDPQFADDPAMDTVNSITLSYTFFKTGDETAEP 222
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BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Match: A0A662WVH6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVH6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.750e-27
Identity = 45/60 (75.00%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    7 PSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQT 186
            P  AG+YFNKIQCFCFEEQRL+  EEIDMPVFFF+DPE+ DDP+M+ V+N+TLSYTFF+T
Sbjct:   21 PPSAGVYFNKIQCFCFEEQRLKPHEEIDMPVFFFIDPEICDDPSMNGVHNITLSYTFFKT 80
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BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Match: A0A2K3LZ17_TRIPR (Cytochrome c oxidase assembly protein COX11 mitochondrial-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LZ17_TRIPR)

HSP 1 Score: 104 bits (259), Expect = 2.780e-27
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    7 PSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEE 195
            P  AG+YFNKIQCFCFEEQRL  GE+IDMPVFF++DPE+ +DP MD +NN+ LSYTFF+ +EE
Sbjct:   34 PMKAGVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEIEEDPKMDGINNIILSYTFFKVSEE 96
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BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Match: A0A813CGT6_9DINO (Cox11 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CGT6_9DINO)

HSP 1 Score: 103 bits (257), Expect = 5.450e-27
Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    7 PSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEHA 201
            P  AG++FNKIQCFCFEEQRLR  EEIDMP+FF++DP+ + DPAM ++ NVTLSYTFF T EE A
Sbjct:   31 PMRAGLHFNKIQCFCFEEQRLRPREEIDMPIFFYIDPDFVSDPAMKNIRNVTLSYTFFNTGEETA 95
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BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Match: A0A4D9CVM6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVM6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.870e-27
Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    7 PSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEH 198
            P  AG+YFNKIQCFCF+EQRL+  EE+DMPVFFF+DPEML+DP+MD+V+ +TLSYTFF+T EE+
Sbjct:  132 PPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEEN 195
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BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Match: A0A6G0WXN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXN5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 9.280e-27
Identity = 45/60 (75.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    7 PSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQT 186
            P+ AG+YFNKIQCFCFEEQRL++ EEIDMPVFFF+DPE++DDP+M +V+N+TLSYTFF+T
Sbjct:  151 PAKAGLYFNKIQCFCFEEQRLKAHEEIDMPVFFFIDPEIVDDPSMQNVSNITLSYTFFRT 210
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Match: M4QL95_JAKLI (Heme biosynthesis protein n=1 Tax=Jakoba libera TaxID=143017 RepID=M4QL95_JAKLI)

HSP 1 Score: 105 bits (262), Expect = 1.260e-26
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    7 PSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEE 195
            P   GIYFNKIQCFCFEEQRL+S E IDMPVFFFLDP++LDDP M  +++VTLSYTFFQ AE+
Sbjct:  127 PPQMGIYFNKIQCFCFEEQRLKSHETIDMPVFFFLDPDLLDDPLMSDIDHVTLSYTFFQVAED 189
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14889.3478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEK6_9STRA4.190e-3179.41Cytochrome c oxidase assembly protein CtaG/Cox11-d... [more]
A0A7S2V6J6_9STRA8.980e-2980.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A485LJQ5_9STRA1.120e-2880.00Aste57867_22012 protein n=1 Tax=Aphanomyces stella... [more]
A0A482RTI3_9ARCH6.030e-2871.64Cytochrome c oxidase assembly protein n=1 Tax=arch... [more]
A0A662WVH6_9STRA1.750e-2775.00Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A2K3LZ17_TRIPR2.780e-2769.84Cytochrome c oxidase assembly protein COX11 mitoch... [more]
A0A813CGT6_9DINO5.450e-2769.23Cox11 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A4D9CVM6_9STRA5.870e-2771.88Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6G0WXN5_9STRA9.280e-2775.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
M4QL95_JAKLI1.260e-2674.60Heme biosynthesis protein n=1 Tax=Jakoba libera Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14889contigE-fasciculatus_F_contig14889:2789..3064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue4.1e-22
Seed eggNOG ortholog42099.EPrPV00000018154
Preferred nameCOX11
KEGG koko:K02258
KEGG TC3.D.4.8
KEGG Pathwayko00190,ko01100,ko04714,map00190,map01100,map04714
KEGG ModuleM00154
GOsGO:0000003,GO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006091,GO:0007275,GO:0008150,GO:0008152,GO:0009060,GO:0009653,GO:0009791,GO:0009846,GO:0009856,GO:0009893,GO:0009987,GO:0010015,GO:0010101,GO:0010155,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0019222,GO:0022414,GO:0022607,GO:0022622,GO:0022898,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031966,GO:0031967,GO:0031975,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032592,GO:0032879,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0043085,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043467,GO:0043621,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044706,GO:0045333,GO:0046872,GO:0046914,GO:0048364,GO:0048518,GO:0048522,GO:0048528,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051050,GO:0051341,GO:0051353,GO:0051704,GO:0055114,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:0090696,GO:0090697,GO:0090698,GO:0098573,GO:0099402,GO:1904062,GO:1904064,GO:1904732,GO:1904734,GO:1904959,GO:1904960,GO:1905392
EggNOG free text desc.Cytochrome c oxidase assembly protein COX11, mitochondrial. Source PGD
EggNOG OGs1MF80@121069,COG3175@1,KOG2540@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCytochrome c oxidase assembly protein CtaG/Cox11
Ec32 orthologEc-19_001620.1
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927969.484139-CDS-E-fasciculatus_F_contig14889:2788..30641622927969.484139-CDS-E-fasciculatus_F_contig14889:2788..3064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14889 2789..3064 -
1695995771.9949965-CDS-E-fasciculatus_F_contig14889:2788..30641695995771.9949965-CDS-E-fasciculatus_F_contig14889:2788..3064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14889 2789..3064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14889.3478.1prot_E-fasciculatus_F_contig14889.3478.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14889 2789..3064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14889.3478.1

>prot_E-fasciculatus_F_contig14889.3478.1 ID=prot_E-fasciculatus_F_contig14889.3478.1|Name=mRNA_E-fasciculatus_F_contig14889.3478.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
PAPSLAGIYFNKIQCFCFEEQRLRSGEEIDMPVFFFLDPEMLDDPAMDSV
NNVTLSYTFFQTAEEHAVPEEEEEEEEEEDGGGGRLAVAVQ*
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mRNA from alignment at E-fasciculatus_F_contig14889:2789..3064-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14889.3478.1 ID=mRNA_E-fasciculatus_F_contig14889.3478.1|Name=mRNA_E-fasciculatus_F_contig14889.3478.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14889:2789..3064- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGCCCCCTCTCTCGCAGGGATCTATTTCAACAAGATCCAGTGCTTCTG
CTTCGAGGAGCAGAGGCTCCGCTCCGGGGAAGAGATCGACATGCCCGTCT
TCTTCTTCCTAGACCCCGAGATGCTCGACGACCCGGCCATGGACAGTGTC
AACAACGTCACGCTGTCGTACACGTTCTTCCAGACCGCTGAGGAGCATGC
CGTGCCAGAGGAAGAGGAAGAAGAGGAGGAAGAAGAAGATGGGGGAGGGG
GCAGATTGGCGGTGGCCGTACAATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14889:2789..3064-

>mRNA_E-fasciculatus_F_contig14889.3478.1 ID=mRNA_E-fasciculatus_F_contig14889.3478.1|Name=mRNA_E-fasciculatus_F_contig14889.3478.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14889:2789..3064- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGCCCCCTCTCTCGCAGGGATCTATTTCAACAAGATCCAGTGCTTCTG
CTTCGAGGAGCAGAGGCTCCGCTCCGGGGAAGAGATCGACATGCCCGTCT
TCTTCTTCCTAGACCCCGAGATGCTCGACGACCCGGCCATGGACAGTGTC
AACAACGTCACGCTGTCGTACACGTTCTTCCAGACCGCTGAGGAGCATGC
CGTGCCAGAGGAAGAGGAAGAAGAGGAGGAAGAAGAAGATGGGGGAGGGG
GCAGATTGGCGGTGGCCGTACAATAGCCCGCCCCCTCTCTCGCAGGGATC
TATTTCAACAAGATCCAGTGCTTCTGCTTCGAGGAGCAGAGGCTCCGCTC
CGGGGAAGAGATCGACATGCCCGTCTTCTTCTTCCTAGACCCCGAGATGC
TCGACGACCCGGCCATGGACAGTGTCAACAACGTCACGCTGTCGTACACG
TTCTTCCAGACCGCTGAGGAGCATGCCGTGCCAGAGGAAGAGGAAGAAGA
GGAGGAAGAAGAAGATGGGGGAGGGGGCAGATTGGCGGTGGCCGTACAAT
AG
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