mRNA_E-fasciculatus_F_contig14883.3476.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14883.3476.1
Unique NamemRNA_E-fasciculatus_F_contig14883.3476.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14883.3476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14883contigE-fasciculatus_F_contig14883:478..1286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size809
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14883.3476.1prot_E-fasciculatus_F_contig14883.3476.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14883 715..1140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927969.0845234-UTR-E-fasciculatus_F_contig14883:477..7141622927969.0845234-UTR-E-fasciculatus_F_contig14883:477..714Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14883 478..714 +
1695995771.9596624-UTR-E-fasciculatus_F_contig14883:477..7141695995771.9596624-UTR-E-fasciculatus_F_contig14883:477..714Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14883 478..714 +
1622927969.191772-UTR-E-fasciculatus_F_contig14883:1140..12861622927969.191772-UTR-E-fasciculatus_F_contig14883:1140..1286Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14883 1141..1286 +
1695995771.9756343-UTR-E-fasciculatus_F_contig14883:1140..12861695995771.9756343-UTR-E-fasciculatus_F_contig14883:1140..1286Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14883 1141..1286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927969.0976074-CDS-E-fasciculatus_F_contig14883:714..11401622927969.0976074-CDS-E-fasciculatus_F_contig14883:714..1140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14883 715..1140 +
1695995771.9673812-CDS-E-fasciculatus_F_contig14883:714..11401695995771.9673812-CDS-E-fasciculatus_F_contig14883:714..1140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14883 715..1140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14883.3476.1

>prot_E-fasciculatus_F_contig14883.3476.1 ID=prot_E-fasciculatus_F_contig14883.3476.1|Name=mRNA_E-fasciculatus_F_contig14883.3476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=142bp
MQGTYSGTAALATKNTGGIHGIRCNIPLRNYIVYGHSISCPRRNYCLSTV
ARYKTVFSSRAVRLRSRAVFFRWNARQTALANGNERTQNATLYCTKFPSP
PAARQTSSIQVTPAKSCPGYSCSHALHTPNAVAYVDDRPHP*
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mRNA from alignment at E-fasciculatus_F_contig14883:478..1286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14883.3476.1 ID=mRNA_E-fasciculatus_F_contig14883.3476.1|Name=mRNA_E-fasciculatus_F_contig14883.3476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=809bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14883:478..1286+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCGGCCAATCGTCCTGAAAGAGACAACATGTACAAGTACACACGGCGG
TGCACAGCAGCACAATGAGCGCACCACGTGTGGCATGGAGGGCAGTGACC
CAGCGAGGTTTAGCTCGATTCAACAGGAAGTCCCATCGTTCGGGGATACA
GAAACGCTGGATTTATCCGACTTCTTCAGTGATACGCATAGGAACCAAAC
GACCCGATCGTGTCTCTAAATTATTCTGCAGTCACGCATGCAAGGCACCT
ACAGCGGTACAGCAGCATTGGCCACAAAAAACACCGGGGGTATACATGGA
ATTAGGTGCAATATCCCCCTACGTAATTACATAGTCTATGGGCATTCAAT
CTCATGCCCAAGGCGCAACTACTGTCTCTCTACAGTTGCACGGTACAAGA
CGGTCTTCTCGTCTCGTGCAGTAAGACTCAGGTCGCGGGCGGTGTTCTTC
AGGTGGAACGCGCGGCAAACGGCTCTCGCCAACGGTAACGAAAGGACACA
AAACGCCACCCTTTACTGTACAAAGTTCCCATCGCCACCCGCCGCCCGCC
AAACATCATCGATTCAGGTAACCCCGGCAAAATCTTGCCCGGGTTATTCG
TGCTCACACGCGCTGCACACACCTAACGCCGTCGCTTACGTCGACGACCG
TCCCCACCCCTGACTGTCCTCCCCCTATCGACTGAATGGACTTCGCGAAC
AGTCGGGGTGACCACGGGAGACACGGGCGGCTCCTCGTCGGCATCAAACT
CCGCCCACCCCCGAGCAGCAGCAGCAGCAGCAGCACTGCCGCCGCCGCCG
CCACCGCCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14883:478..1286+

>mRNA_E-fasciculatus_F_contig14883.3476.1 ID=mRNA_E-fasciculatus_F_contig14883.3476.1|Name=mRNA_E-fasciculatus_F_contig14883.3476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14883:478..1286+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAGGCACCTACAGCGGTACAGCAGCATTGGCCACAAAAAACACCGG
GGGTATACATGGAATTAGGTGCAATATCCCCCTACGTAATTACATAGTCT
ATGGGCATTCAATCTCATGCCCAAGGCGCAACTACTGTCTCTCTACAGTT
GCACGGTACAAGACGGTCTTCTCGTCTCGTGCAGTAAGACTCAGGTCGCG
GGCGGTGTTCTTCAGGTGGAACGCGCGGCAAACGGCTCTCGCCAACGGTA
ACGAAAGGACACAAAACGCCACCCTTTACTGTACAAAGTTCCCATCGCCA
CCCGCCGCCCGCCAAACATCATCGATTCAGGTAACCCCGGCAAAATCTTG
CCCGGGTTATTCGTGCTCACACGCGCTGCACACACCTAACGCCGTCGCTT
ACGTCGACGACCGTCCCCACCCCTGAATGCAAGGCACCTACAGCGGTACA
GCAGCATTGGCCACAAAAAACACCGGGGGTATACATGGAATTAGGTGCAA
TATCCCCCTACGTAATTACATAGTCTATGGGCATTCAATCTCATGCCCAA
GGCGCAACTACTGTCTCTCTACAGTTGCACGGTACAAGACGGTCTTCTCG
TCTCGTGCAGTAAGACTCAGGTCGCGGGCGGTGTTCTTCAGGTGGAACGC
GCGGCAAACGGCTCTCGCCAACGGTAACGAAAGGACACAAAACGCCACCC
TTTACTGTACAAAGTTCCCATCGCCACCCGCCGCCCGCCAAACATCATCG
ATTCAGGTAACCCCGGCAAAATCTTGCCCGGGTTATTCGTGCTCACACGC
GCTGCACACACCTAACGCCGTCGCTTACGTCGACGACCGTCCCCACCCCT
GA
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