prot_E-fasciculatus_F_contig14874.3471.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig14874.3471.1
Unique Nameprot_E-fasciculatus_F_contig14874.3471.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length147
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14874.3471.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.180e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 
Query:   91 IEGNEQLVLSGNSHYGGQATFETSGSSNQAWEAAEEAIEMHTAAHLGAAGEVRLQQ 146
            IEGNEQLVLS NSHYGGQATFETSGSSNQAWEAAEEAIE+HTAAHLGAAGEVRLQQ
Sbjct:  229 IEGNEQLVLSRNSHYGGQATFETSGSSNQAWEAAEEAIELHTAAHLGAAGEVRLQQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14874.3471.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ86_ECTSI2.180e-2496.43Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025875Leucine rich repeat 4PFAMPF12799LRR_4coord: 13..49
e-value: 3.5E-7
score: 30.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..131
e-value: 1.1E-30
score: 108.4
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 62..83
e-value: 0.25
score: 12.0
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 24..113
coord: 1..43
NoneNo IPR availablePANTHERPTHR45974:SF114coord: 1..43
NoneNo IPR availablePANTHERPTHR45974:SF114coord: 24..113
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14874contigE-fasciculatus_F_contig14874:1474..3172 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14874.3471.1mRNA_E-fasciculatus_F_contig14874.3471.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig14874 1474..3172 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig14874.3471.1 ID=prot_E-fasciculatus_F_contig14874.3471.1|Name=mRNA_E-fasciculatus_F_contig14874.3471.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=147bp
SGAIPESLGQLHSLEELFLHGNRLTGEIPPSLGNLKSLRKLFLNSNDLVG
TVPPELGRLSSLDTLNLSWNNLHGEVPASVKNLNNLQLLSIEGNEQLVLS
GNSHYGGQATFETSGSSNQAWEAAEEAIEMHTAAHLGAAGEVRLQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
IPR025875Leu-rich_rpt_4