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Homology
BLAST of mRNA_E-fasciculatus_F_contig14871.3469.1 vs. uniprot
Match: D7FH38_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI) HSP 1 Score: 123 bits (309), Expect = 3.350e-29 Identity = 187/190 (98.42%), Postives = 189/190 (99.47%), Query Frame = 1
Query: 7 EPSEKAYTPLHRAVLGGHSEVARVLIKAGADKDARTGGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESIANPNAQDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGRADYEAVTEDHGSTPLHVAAISGFDEV 576
EPSEKAYTPLHRAVLGGHSEVARVLIKAGADKDARTGGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ES+A+PNAQDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGRADYEAVTEDHGSTPLHVAAISGFDEV
Sbjct: 118 EPSEKAYTPLHRAVLGGHSEVARVLIKAGADKDARTGGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLADPNAQDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGRADYEAVTEDHGSTPLHVAAISGFDEV 307
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 122.9 |
| Seed ortholog evalue | 1.7e-25 |
| Seed eggNOG ortholog | 2880.D7FH38 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 576 |
| Cds size | 576 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14871.3469.1 >prot_E-fasciculatus_F_contig14871.3469.1 ID=prot_E-fasciculatus_F_contig14871.3469.1|Name=mRNA_E-fasciculatus_F_contig14871.3469.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=192bp
CREPSEKAYTPLHRAVLGGHSEVARVLIKAGADKDARTGGSGATPLHLAA
RKGHESCLRTLLLTGADKDSKRGLDGATPLHQAAFFGQMGAVRELLESIA
NPNAQDAEGCTPVFLASQEGHEEVVVDLLRNGASPDMSREDGWAPLHAAA
RFGHASTAAALLTEGRADYEAVTEDHGSTPLHVAAISGFDEV back to topmRNA from alignment at E-fasciculatus_F_contig14871:161..3022+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14871.3469.1 ID=mRNA_E-fasciculatus_F_contig14871.3469.1|Name=mRNA_E-fasciculatus_F_contig14871.3469.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2862bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14871:161..3022+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCCGAGAGCCCAGCGAGAAGGCGTACACCCCGCTGCACCGGGCGGTGCT
GGGCGGGCACAGCGAAGTCGCCCGCGTGCTGATCAAGGCGGGGGCGGACA
AGGACGCCAGGACAGGGGGAAGCGGCGCGACTCCGCTTCATCTCGCCGCT
CGGAAGGTTTGTTTTATTGTTCTGTTCTGTTGTTATTTTTTTTATAAAGG
GAGATTCCCCCGCTATGGTTCTGGCGGCGGCCTTTTCGGTGCTTTATGTG
GGTCTGTTGTTGGTTTTCTGTGACCCGAGGACGGGAGGAAGCGGCGCGAC
TCCGCTTCATCTCGCCGCTCGGAAGGTTTGTTTTCTTGTTGTGTTCTTAT
TTCTAGGGGGAGATTATTACCCCGCAACTGCAGTTCTGGTGGCCGTCTTT
TCGGTGCTCTATGGCTCTGGTCTTGGCTTGTATGTGCCCGTATATCCGCT
TCATCTCGCTTCTCGGAAGGGTTTATCCTAGGGTCGTGGGCGTACATGGT
TCGTAGATGGATGGTGTGATAAAATCTGTGAAAGTGATGTCCGGCCTAGT
CGATGATATCCGTCGTAGAATCATTGTAATGTGATATCCGTCGTAGATCA
GTGAACGGGATTTTCATCGTGAAGGGTCCCGCGTAGATTGAATTCATTAT
TCTCGTTCACGGCAACGAAGCCATCACACTTGCGCTCTCCTGCAATCGTG
CTTTTAGTGCGTCACTAAAGCTTGACCACAATTCTCTCCCTCGCGTACAG
GGCCACGAGAGTCGTCTACTCCTACATACGTCTCTGGGTGTCTTGTGTTC
ACGTTTGTCAAGCAAAGTGTTCCTACCATCATCCGTCGACCCTGCGTAAG
CGCTAACACAACCACCACTTGTGCAGTCGTGCCTTGCCGTGTGTCATGAC
TGAACTCATCCACGATTCTCTCCCTCGCGTACACAGGGCCACGAGAGTTG
TCTGCGGACGCTGCTTTTGACCGGTGCTGACAAGGATTCCAAGCGGGGTC
TGGATGGGGCGACGCCTTTGCATCAGGTAACGGGACAGGCAGTACGTACG
ACGCGCCGCCAATAGATGGATGATCTTCGCAGGTTTTTTAGAATATGGAA
TTGGCTGAGGGGTACCCTTGCCCGGTCTCTCTTCTGTACGGCAGTAACCT
TACTGCTGTCCTCGTGTTGTACGGCTGTAACCTACCTCACTGTCACTGTG
TTGTGCGACAGTAACCTTACTGCCCTTGTGTAGTACGGCAGTACCCTTAC
TGCCCTTGTGTAGTACGGCAGTATGCTTACTGCCCTTTTGTTGTACGGCA
GTAGGCTTACTGCTGTCCTTGTGTTGTACGGCAGTCCATCTGTCAAGGCG
GGTAAAAACGTGAAAAACCCTGACTGCTACCATATATTTGCTTACCATCC
TAGACCGTGCTACCGCCATAGGTGGGAGGGGGGGGGGGGCCCTCTTTTGC
TCGCAATGTTGTCAACTCTTCGTCAAAAAGTTATTATGCAAAAGTAACGC
AGGAGAGGAGGGGAGGAAGAGGAGCTCTCCTGTGCGACCACGGGTCGGAG
TAAAACCGGCAGAAATGTTGTGGGCTCTGGTTTAAAGTTATGGAAAAAAA
AAATGTTGTCGCACGACAAGGTGTGCCCCAAACGGCTCGTAAGTATCTCA
ACTGTTTGCCTTGGTTTTACTTTGGGGCGCGGTCAGGCGGCGTTTTTCGG
GCAAATGGGGGCCGTGCGAGAGCTCCTGGAGTCGATCGCCAACCCCAACG
CGCAGGATGCGGAGGGCTGTACTCCTGTGTTTCTCGCATCACAGGAGGGT
CACGAAGAGGTGAGTCATTTACCGTGGACCGTATACCGCAAGATGCGGAG
GGTCACCAAGAAGTGAGGTATTCCGTACTGTATACCGAATACCGTACCAT
GTACCGTAGGTTCCTATCTCTCCGCCTCTTACGGAGGGTCACGAAGAGGT
GAGTTATTTACCGTGGACCGTATACCGCAAGATACGGAGGGTCACCAAGA
AGTGAGGTATTACCGTGGACCGTACCATATACATTAAGGTCCGAACTCTC
CGCCTCTTACGGAGGGTCACGAACAGGTGCTTCATTTTCCGTACCGTATA
CCGCAAGATGCGTAAAGTGAGGTGTTACCGTACTGTATACCGAATACCGT
ACCATATACCGTAAGTGCCGATCTCTCCGCCTCTTACGGAGGGTCACGAA
GAGGTGAGTCATTTACGTTGGCCCCAAGCTGCCCCGCATGTACTCCATTC
CCAACTTTTTTTTTTTCTTTTTATCTGCCGTCCTTCCAAAAAAGGCGTTG
GTGGACCTCCTGAGGAACGGAGCCCCGCCCTCCTTATTTCATCATTTGTT
GTCGTTGTCTTGACATTAGAAAAATCCTCACGTTAATTCCGTTCCGACTC
TTCACCATCACGTACTGTATGTATTACCAAGTATTTCTCTCTTGAAGTAT
TATTATTTTTCCTTGTCCTGCTTGACGACGACGAAAAGGTCGTGGTGGAC
CTCCTGAGGCTCCGTATCTCATCATTTGTTGACATAAAAAAAAATCTTCT
TAACATAAGTTCCGTTCCGATTCTTCACCATCACCTACTGATGTACGAAG
TATTATTTATTCTCTCTTCTTATTAATGTTCCTTGTTGTGCTTGGCGACG
AAAAGGTGGTGGTGGACCTCCTGAGGAACGGAGCGTCGCCGGACATGTCC
CGCGAAGACGGGTGGGCTCCGCTCCACGCCGCCGCCCGCTTCGGGCACGC
CTCCACCGCCGCGGCTTTGCTGACGGAGGGGCGGGCGGACTACGAGGCTG
TCACGGAGGACCACGGGTCTACCCCGCTGCACGTGGCCGCCATCAGCGGC
TTCGACGAGGTG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14871:161..3022+ >mRNA_E-fasciculatus_F_contig14871.3469.1 ID=mRNA_E-fasciculatus_F_contig14871.3469.1|Name=mRNA_E-fasciculatus_F_contig14871.3469.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14871:161..3022+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCCGAGAGCCCAGCGAGAAGGCGTACACCCCGCTGCACCGGGCGGTGCT
GGGCGGGCACAGCGAAGTCGCCCGCGTGCTGATCAAGGCGGGGGCGGACA
AGGACGCCAGGACAGGGGGAAGCGGCGCGACTCCGCTTCATCTCGCCGCT
CGGAAGTGCCGAGAGCCCAGCGAGAAGGCGTACACCCCGCTGCACCGGGC
GGTGCTGGGCGGGCACAGCGAAGTCGCCCGCGTGCTGATCAAGGCGGGGG
CGGACAAGGACGCCAGGACAGGGGGAAGCGGCGCGACTCCGCTTCATCTC
GCCGCTCGGAAGGGCCACGAGAGTTGTCTGCGGACGCTGCTTTTGACCGG
TGCTGACAAGGATTCCAAGCGGGGTCTGGATGGGGCGACGCCTTTGCATC
AGGGCCACGAGAGTTGTCTGCGGACGCTGCTTTTGACCGGTGCTGACAAG
GATTCCAAGCGGGGTCTGGATGGGGCGACGCCTTTGCATCAGGCGGCGTT
TTTCGGGCAAATGGGGGCCGTGCGAGAGCTCCTGGAGTCGATCGCCAACC
CCAACGCGCAGGATGCGGAGGGCTGTACTCCTGTGTTTCTCGCATCACAG
GAGGGTCACGAAGAGGCGGCGTTTTTCGGGCAAATGGGGGCCGTGCGAGA
GCTCCTGGAGTCGATCGCCAACCCCAACGCGCAGGATGCGGAGGGCTGTA
CTCCTGTGTTTCTCGCATCACAGGAGGGTCACGAAGAGGTGGTGGTGGAC
CTCCTGAGGAACGGAGCGTCGCCGGACATGTCCCGCGAAGACGGGTGGGC
TCCGCTCCACGCCGCCGCCCGCTTCGGGCACGCCTCCACCGCCGCGGCTT
TGCTGACGGAGGGGCGGGCGGACTACGAGGCTGTCACGGAGGACCACGGG
TCTACCCCGCTGCACGTGGCCGCCATCAGCGGCTTCGACGAGGTGGTGGT
GGTGGACCTCCTGAGGAACGGAGCGTCGCCGGACATGTCCCGCGAAGACG
GGTGGGCTCCGCTCCACGCCGCCGCCCGCTTCGGGCACGCCTCCACCGCC
GCGGCTTTGCTGACGGAGGGGCGGGCGGACTACGAGGCTGTCACGGAGGA
CCACGGGTCTACCCCGCTGCACGTGGCCGCCATCAGCGGCTTCGACGAGG
TG back to top
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