mRNA_E-fasciculatus_F_contig1487.3467.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1487.3467.1
Unique NamemRNA_E-fasciculatus_F_contig1487.3467.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1487.3467.1 vs. uniprot
Match: D8LDX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX6_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 7.240e-16
Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 MPNSRAPVLPEKKGSRAFSVRQECARGKRVSGWKHRRRGGRHKPGVSTYEYAALYRTSELSARGATFKS 207
            M NSRA VLPEK G+RAFS RQECARGK          G R KPGVSTYEYAAL R SELS+R   FK+
Sbjct:    1 MSNSRASVLPEKNGARAFSARQECARGKTS--------GRRTKPGVSTYEYAALNRASELSSRAVAFKA 61
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1487.3467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDX6_ECTSI7.240e-1665.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1487contigE-fasciculatus_F_contig1487:4905..5346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927967.9702735-CDS-E-fasciculatus_F_contig1487:4904..50421622927967.9702735-CDS-E-fasciculatus_F_contig1487:4904..5042Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1487 4905..5042 -
1695995771.4330323-CDS-E-fasciculatus_F_contig1487:4904..50421695995771.4330323-CDS-E-fasciculatus_F_contig1487:4904..5042Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1487 4905..5042 -
1622927967.9867532-CDS-E-fasciculatus_F_contig1487:5262..53461622927967.9867532-CDS-E-fasciculatus_F_contig1487:5262..5346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1487 5263..5346 -
1695995771.4464588-CDS-E-fasciculatus_F_contig1487:5262..53461695995771.4464588-CDS-E-fasciculatus_F_contig1487:5262..5346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1487 5263..5346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1487.3467.1prot_E-fasciculatus_F_contig1487.3467.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1487 4905..5346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1487.3467.1

>prot_E-fasciculatus_F_contig1487.3467.1 ID=prot_E-fasciculatus_F_contig1487.3467.1|Name=mRNA_E-fasciculatus_F_contig1487.3467.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=74bp
MPNSRAPVLPEKKGSRAFSVRQECARGKRVSGWKHRRRGGRHKPGVSTYE
YAALYRTSELSARGATFKSCSCL*
back to top

mRNA from alignment at E-fasciculatus_F_contig1487:4905..5346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1487.3467.1 ID=mRNA_E-fasciculatus_F_contig1487.3467.1|Name=mRNA_E-fasciculatus_F_contig1487.3467.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=442bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1487:4905..5346- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAAACAGTCGGGCGCCCGTGCTGCCGGAGAAGAAAGGATCTCGAGC
GTTCTCAGTGCGCCAAGAGTGTGCGAGAGGGAAGGTGGATCCCATCGCCA
GCTGTAGTCTTTTTTCGGGGCTACACCAATCAGCAGTAGATGGTGTGGTT
GCACCCTGCCTCTCGCGTCAAATATGGAGTACTTTCGACGTTCCAACCGA
AATGCCATGTCACCCGAGACCCCCTGACCACGTTTCGTGACATTACACCC
ATGCTCTCGATCTTCATTCTGGCACTATCGAAAGCTATATTTTCGCCAAA
TCAGAGAGTGTCGGGTTGGAAACACAGACGTCGTGGCGGGCGCCACAAAC
CTGGTGTCTCGACGTACGAATACGCTGCGCTCTATCGTACAAGTGAACTG
TCTGCTAGAGGCGCAACCTTCAAATCATGTAGTTGTCTTTAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1487:4905..5346-

>mRNA_E-fasciculatus_F_contig1487.3467.1 ID=mRNA_E-fasciculatus_F_contig1487.3467.1|Name=mRNA_E-fasciculatus_F_contig1487.3467.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1487:4905..5346- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAAACAGTCGGGCGCCCGTGCTGCCGGAGAAGAAAGGATCTCGAGC
GTTCTCAGTGCGCCAAGAGTGTGCGAGAGGGAAGATGCCAAACAGTCGGG
CGCCCGTGCTGCCGGAGAAGAAAGGATCTCGAGCGTTCTCAGTGCGCCAA
GAGTGTGCGAGAGGGAAGAGAGTGTCGGGTTGGAAACACAGACGTCGTGG
CGGGCGCCACAAACCTGGTGTCTCGACGTACGAATACGCTGCGCTCTATC
GTACAAGTGAACTGTCTGCTAGAGGCGCAACCTTCAAATCATGTAGTTGT
CTTTAAAGAGTGTCGGGTTGGAAACACAGACGTCGTGGCGGGCGCCACAA
ACCTGGTGTCTCGACGTACGAATACGCTGCGCTCTATCGTACAAGTGAAC
TGTCTGCTAGAGGCGCAACCTTCAAATCATGTAGTTGTCTTTAA
back to top