mRNA_E-fasciculatus_F_contig1487.3466.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1487.3466.1 vs. uniprot
Match: D8LDX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX6_ECTSI) HSP 1 Score: 749 bits (1935), Expect = 9.150e-269 Identity = 410/476 (86.13%), Postives = 422/476 (88.66%), Query Frame = 1
Query: 25 VLACLGRRANVMRSREATQLSLISTRAMANREMRACKAERDRAFAELVYGRLFTRTGGIVRTWTSIIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKVLTGALSAFTNSNAIGRYAQRVKWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPAPLPLMTTAMLLRPPSKDSLPQSRPGTAETTPATAPSSSSNKRPNRRKGVGGQGGQKKGRTRPKRSKSVVGREKKVGDAGGGGSGQASTGATPASTGPGAAEGNSTAGENASQPRRPPMYVSSEAKHREIFSWLQRTRAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFAKMSHVLPPPPRMPRMFTPEEGDEMFDRAAARSTTPSFSHAAASIFEGGSEAAATPQPGEAVGGTIPSEAVLIEVETAAXXXXXXXXAGEAAVKAVLGRGSGAG 1452
VL CLGRRA VMRSRE TQLSLISTRAMANREMR CKAERDRAFAELV+GRLFTRTGGIVRTWT+IIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVK++ GALSAFTNSNAIGRYAQRV WGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPP PLPLMTTAML RPPSK SLP SRPGTAETTPAT+ S SSNKRPNRRKG GGQGGQKKGRTRPKR KSVVGREKKV + GGG GQ S AT AST P A+ S +NA QPRRPP+YVSSEAKHREI SWLQRTRAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFAKMSHVLPPP RMPR+FTPEEGDEM DRAAARSTTPSF+HAAAS EGG EA PQ G A GGT+P EAVLIEVE AA AGEAAVKAVLG GSGAG
Sbjct: 74 VLPCLGRRAKVMRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVHGRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKIIIGALSAFTNSNAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTAML-RPPSKASLPPSRPGTAETTPATSNSPSSNKRPNRRKGAGGQGGQKKGRTRPKRQKSVVGREKKVENDTGGGGGQGSARATLASTVPETADSTSAPPKNALQPRRPPVYVSSEAKHREILSWLQRTRAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFAKMSHVLPPPSRMPRVFTPEEGDEMLDRAAARSTTPSFTHAAASFLEGGPEAHGAPQSGAAAGGTMPPEAVLIEVEAAATAAAEAARAGEAAVKAVLGSGSGAG 548
BLAST of mRNA_E-fasciculatus_F_contig1487.3466.1 vs. uniprot
Match: A0A6H5L2P4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P4_9PHAE) HSP 1 Score: 617 bits (1592), Expect = 1.930e-218 Identity = 338/432 (78.24%), Postives = 357/432 (82.64%), Query Frame = 1
Query: 58 MRSREATQLSLISTRAMANREMRACKAERDRAFAELVYGRLFTRTGGIVRTWTSIIANIKRLLFL------------------------QGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKVLTGALSAFTNSNAIGRYAQRVKWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPAPLPLMTTAMLLRPPSKDSLPQSRPGTAETTPATAPSSSSNKRPNRRKGVGGQGGQKKGRTRPKRSKSVVGREKKVGDAGGGGSGQASTGATPASTGPGAAEGNSTAGENASQPRRPPMYVSSEAKHREIFSWLQRTRAKHCRDVINYERFT---------------IFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFAKMSHVLPPPPRMPRMFTPEEGDEMFDRAAAR 1236
MRSRE TQL LIST+A+ANREMR CKAERDRAFAELVYGRLFTRTGGIVRTWT+IIANIKRLLFL QGAVERAARQHLLEANMNRMAIVTRF+ QMALKRRRNRAVK+L GALSAFT+S+AIGRYAQRV WGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPP PLPLMTT M LRPPS+ SLP S+PGTA+TTPAT+ S SSNKRPNRRKG GGQGG KKGRTRPKR KSVVGR+K+ + GGG GQ S GAT AST P AE NS E A Q RRPP+YVSSEAKHREIFSWLQRTRAKHCRD+INYERFT IFPCMVELLLQHERRTYGTRLQAV+HVI LRSFGRLSRVWTEGGYFAKMSH LPPPPRMPR+FTPEEGDEMFDRAA+R
Sbjct: 1 MRSRETTQLFLISTKALANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFLMPHIVHGADDNDISICLRSYDIVQQGAVERAARQHLLEANMNRMAIVTRFIGQMALKRRRNRAVKILIGALSAFTSSSAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTGMPLRPPSEASLPPSQPGTAKTTPATSTSPSSNKRPNRRKGAGGQGGPKKGRTRPKRQKSVVGRKKQFQNDAGGGGGQGSAGATHASTVPETAESNSAPRETAPQRRRPPVYVSSEAKHREIFSWLQRTRAKHCRDIINYERFTPFSSLELPLNLKRTKIFPCMVELLLQHERRTYGTRLQAVRHVITLRSFGRLSRVWTEGGYFAKMSHALPPPPRMPRVFTPEEGDEMFDRAASR 432 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1487.3466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1487.3466.1 >prot_E-fasciculatus_F_contig1487.3466.1 ID=prot_E-fasciculatus_F_contig1487.3466.1|Name=mRNA_E-fasciculatus_F_contig1487.3466.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=486bp TPQFVFSNVLACLGRRANVMRSREATQLSLISTRAMANREMRACKAERDRback to top mRNA from alignment at E-fasciculatus_F_contig1487:1846..4553- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1487.3466.1 ID=mRNA_E-fasciculatus_F_contig1487.3466.1|Name=mRNA_E-fasciculatus_F_contig1487.3466.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1487:1846..4553- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1487:1846..4553- >mRNA_E-fasciculatus_F_contig1487.3466.1 ID=mRNA_E-fasciculatus_F_contig1487.3466.1|Name=mRNA_E-fasciculatus_F_contig1487.3466.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2916bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1487:1846..4553- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |