mRNA_E-fasciculatus_F_contig14868.3465.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14868.3465.1
Unique NamemRNA_E-fasciculatus_F_contig14868.3465.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14868.3465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14868contigE-fasciculatus_F_contig14868:2358..3132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size776
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927967.8000965-UTR-E-fasciculatus_F_contig14868:2357..27391622927967.8000965-UTR-E-fasciculatus_F_contig14868:2357..2739Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14868 2358..2739 +
1695995771.3706913-UTR-E-fasciculatus_F_contig14868:2357..27391695995771.3706913-UTR-E-fasciculatus_F_contig14868:2357..2739Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14868 2358..2739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927967.8128264-CDS-E-fasciculatus_F_contig14868:2739..31321622927967.8128264-CDS-E-fasciculatus_F_contig14868:2739..3132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14868 2740..3132 +
1695995771.3791163-CDS-E-fasciculatus_F_contig14868:2739..31321695995771.3791163-CDS-E-fasciculatus_F_contig14868:2739..3132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14868 2740..3132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14868.3465.1prot_E-fasciculatus_F_contig14868.3465.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14868 2740..3132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14868.3465.1

>prot_E-fasciculatus_F_contig14868.3465.1 ID=prot_E-fasciculatus_F_contig14868.3465.1|Name=mRNA_E-fasciculatus_F_contig14868.3465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=131bp
MTLALAQQQRPLFLVLPAYCSGRKTTLHLQQSKLHSSANTRPTHGSILRP
CFVTISSSPCGHQIQASVLHPQRQTSGHIGTLYNACTDEKPKSPTRTMLG
IPKKRRVDLSPRCSILPHEPITAQTKGLLRS
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mRNA from alignment at E-fasciculatus_F_contig14868:2358..3132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14868.3465.1 ID=mRNA_E-fasciculatus_F_contig14868.3465.1|Name=mRNA_E-fasciculatus_F_contig14868.3465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=775bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14868:2358..3132+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCGATCGATTTTATCAGTTCATGTATCCACGATTATCACATCGGCGGA
TACCTTTGTACTGTATGCATACTATAATACCCATAAGAGAGAGGGAGATC
GGAAAAGGTTAAGGTTTTGCTTCTGAAAGGAGACAAATACATGCTTCGTC
TGTCCTGATCAAGTGCACTCTTAAGACTTGCACACCCCCCAAAAGGCAGA
ACGACGGGTGCGTATGCGGGAGGCTTTGTTCTATTCCGTCCGCCTAAGAA
TTAACCGCCCAAATACACCCTGTATTCCCTGGCAAGAAGCTCGGTACGTC
GAGACACATGAATGTGCAGCTTATGTCTAGCCTCTTGTGCAACACTAAAT
GAGCAACGCACGCTCTCCTACTCACCGCACGTATGACCCTCGCCCTCGCA
CAACAACAGCGTCCTCTCTTCTTAGTCTTGCCAGCTTACTGTAGTGGCCG
CAAGACGACCCTACACCTACAGCAGAGCAAACTTCACTCGTCAGCCAACA
CCCGTCCCACTCACGGGTCCATCCTTCGGCCTTGTTTTGTCACGATTAGC
AGCTCTCCGTGTGGACATCAAATACAAGCGAGTGTCCTACATCCGCAACG
TCAAACGTCCGGGCATATCGGCACTCTCTACAACGCATGTACCGACGAGA
AGCCCAAAAGCCCAACAAGAACAATGCTGGGTATACCGAAAAAAAGGCGG
GTGGATCTCTCACCACGATGTAGTATACTTCCTCACGAGCCTATAACCGC
ACAGACAAAAGGCCTCCTCCGTTCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14868:2358..3132+

>mRNA_E-fasciculatus_F_contig14868.3465.1 ID=mRNA_E-fasciculatus_F_contig14868.3465.1|Name=mRNA_E-fasciculatus_F_contig14868.3465.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14868:2358..3132+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCCTCGCCCTCGCACAACAACAGCGTCCTCTCTTCTTAGTCTTGCC
AGCTTACTGTAGTGGCCGCAAGACGACCCTACACCTACAGCAGAGCAAAC
TTCACTCGTCAGCCAACACCCGTCCCACTCACGGGTCCATCCTTCGGCCT
TGTTTTGTCACGATTAGCAGCTCTCCGTGTGGACATCAAATACAAGCGAG
TGTCCTACATCCGCAACGTCAAACGTCCGGGCATATCGGCACTCTCTACA
ACGCATGTACCGACGAGAAGCCCAAAAGCCCAACAAGAACAATGCTGGGT
ATACCGAAAAAAAGGCGGGTGGATCTCTCACCACGATGTAGTATACTTCC
TCACGAGCCTATAACCGCACAGACAAAAGGCCTCCTCCGTTCAATGACCC
TCGCCCTCGCACAACAACAGCGTCCTCTCTTCTTAGTCTTGCCAGCTTAC
TGTAGTGGCCGCAAGACGACCCTACACCTACAGCAGAGCAAACTTCACTC
GTCAGCCAACACCCGTCCCACTCACGGGTCCATCCTTCGGCCTTGTTTTG
TCACGATTAGCAGCTCTCCGTGTGGACATCAAATACAAGCGAGTGTCCTA
CATCCGCAACGTCAAACGTCCGGGCATATCGGCACTCTCTACAACGCATG
TACCGACGAGAAGCCCAAAAGCCCAACAAGAACAATGCTGGGTATACCGA
AAAAAAGGCGGGTGGATCTCTCACCACGATGTAGTATACTTCCTCACGAG
CCTATAACCGCACAGACAAAAGGCCTCCTCCGTTCA
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