mRNA_E-fasciculatus_F_contig14864.3464.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14864.3464.1 vs. uniprot
Match: D7FXK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK9_ECTSI) HSP 1 Score: 500 bits (1287), Expect = 4.650e-155 Identity = 467/674 (69.29%), Postives = 478/674 (70.92%), Query Frame = 1
Query: 46 PRTASAFPVGN----PGGGGSSGVGFRAIADGEG--GXXXXXXXXXXXXXXXXXXXIADIGGDLGDGNAPVSPIVRMPAEEFSARSLGGMFGAKSQEEVEAEEVWHRGSTALTREDTISPPAHSSSPQPAAATTSGEVAGRSGDG---GVPSTARLSTWAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXFSSAEAASQDVGDSLSGRGGSERARPGNQKWREIRDKALAANGGSFTTARRLANSAASPKPKLEFKRSALPTLGQLRRNSVSPTLPSAAGGVKKRGIIRKSKSECSGDEGXXXXXXGT---IRSIGTPEEEEERMQAKRREVAEKKAIAARAVAARDLATQRAAEAXXXXXXAVTNAEELAAAVERGKAAQSPGTDAPPAAMTIAXXXXXXXXXXXXXXXXXXERHPEGGAAEVAVAA---------------GVSPVAEPEAATDGVKDDGLVAATVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLVQVAVSEAESS----GVARQQXXXXXXXXXXXXXXXXXXXXXXXXAERGVTPPSTAVPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---EKRAVSTSPCASPRILYGGRDFRARLLAPGLGAGGTLGGRREV 1965
PRTAS+FPVGN VGFRA ADGEG XXX IADIGGDLGDGNAPVSPIVRMPAEEFSARSLGGMFGAKSQEEVEAEEVW RGSTAL REDTISPPAHS S GVPSTAR ST AP XXXXXXXXXXXXXXXXXXXXXXXXXXFSS EAAS+DVGDSLSG+GGSERARPGNQKWREIRDKALAANGGSFTTARRLANSAASPKPKLEFKRSALPTLGQLRRNSVSPT AGGV+K IIRKSKS+CSGDEG XXXX IRSIGTPEEEEERMQAKRREVAEKKAIAARAVAARDLATQRAAEA X AVTNAEELAAAV RGKAAQSPGTD P A T + HPEGGA EV A G+ PVAE EA TDG+KDDGLVAATVS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PG V +AVS AESS GVA+QQ AE GV P STAV TP XXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EKRAVSTSPCASPRILYGGRDFRARLLAPGLGAGGTLGGRRE+
Sbjct: 832 PRTASSFPVGNGXXXXXXXXXXXVGFRATADGEGRAXXXXTTAGAAGASSLSGVGSIADIGGDLGDGNAPVSPIVRMPAEEFSARSLGGMFGAKSQEEVEAEEVWQRGSTALMREDTISPPAHSPSXXXXXXXXXXXXXXXXXXXXXXGVPSTARPSTSAP--XXXXXXXXXXXXXXXXXXXXXXXXXXFSSVEAASKDVGDSLSGKGGSERARPGNQKWREIRDKALAANGGSFTTARRLANSAASPKPKLEFKRSALPTLGQLRRNSVSPTPSLLAGGVRKGSIIRKSKSDCSGDEGGEXXXXXXXXXIRSIGTPEEEEERMQAKRREVAEKKAIAARAVAARDLATQRAAEAARXAEAAVTNAEELAAAVARGKAAQSPGTDTPAVATTAPPTIVVQAAAPPVGNE---QHHPEGGAVEVVAPAAADXXXXXXXXXXXSGLLPVAEREA-TDGLKDDGLVAATVSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT-PGPVPMAVSGAESSAESTGVAQQQAEPAPALLEPTGEGEAATA-----AEGGVAPTSTAVLTPTGGTPXXXXAVAVPATVVAATPAVTLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEKRAVSTSPCASPRILYGGRDFRARLLAPGLGAGGTLGGRREL 1493
BLAST of mRNA_E-fasciculatus_F_contig14864.3464.1 vs. uniprot
Match: A0A6H5K0S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0S9_9PHAE) HSP 1 Score: 466 bits (1198), Expect = 4.070e-143 Identity = 505/718 (70.33%), Postives = 518/718 (72.14%), Query Frame = 1
Query: 1 DMHPTPSKPMSPLVQPRTASAFPVGNPGGGGSSG------VGFRAIADGEGGXXXXXXXXXXXXXXXXXXX--IADIGGDLGDGNAPV--------SPIVRMPAEEFSARSLGGMFGAKSQEEVEAEEVWHRGSTALTREDTISPPAHSSSPQPAAATTSGEVAGRSGD---GGVPSTARLSTWAPPXXXXXXXXXXXXXXXXXXXXXXXXXXX----FSSAEAASQDVGDSLSGRGGSERARPGNQKWREIRDKALAANGGSFTTARRLANSAASPKPKLEFKRSALPTLGQL--RRNSVSPTLPSAAGGVKKRGIIRKSKSECSGDEGXXXXXXGT---IRSIGTPEEEEERMQAKRREVAEKKAIAARAVAARDLATQRAAEAXXXXXXAVTNAEELAAAVERGKAAQSPGTDAPPAAMTIAXXXXXXXXXXXXXXXXXXERHPEGGAAEVA------------VAAGVSPVAEPEAATDGVKDDGLVAATVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLVQVAVS---EAESSGVARQQXXXXXXXXXXXXXXXXXXXXXXXXAER-------------------GVTPPSTAVP-TPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKRAVSTSPCASPRILYGGRDFRARLLAPGLGAGGTLGGRREV 1965
DM PTPSKPMSPLVQPRTAS+FPVGNPGG VGFRA ADG+GG XXXXX IADIGGDLGDGNAPV SPIVRMPAEEFSARSLGGMFGAKSQEEVEAEEVWHRGSTAL REDTISPPAHSSSPQP GGVPSTAR ST XXXXXXXXXXXXXXXXXXXXXXXXXXX F S EAAS+DVGDSLSGRGGSERARPGNQKWREIRDKALAANGGSFTTARRLANS ASPKP LEFKR L QL RRNS SPT S AGG++K GIIRKSKS+CSGDEGXXXXXX IRSIGTP RMQAK EVAE AIAARAV ARDLATQRAAE XXXXXX VTNAEELAAAV RGKAAQSPGTD P XXXXXXXXXXXXXXXXXX HP GGA EVA +GVSPVAE EA TDGVKDDGLVAATVS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PG V +AVS AES+GVA+QQ XXXXXXXXXXX V P+T V TP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EKRAVS+SPCASPRILYGGRDFRARLLAPGLGAGGTLGGRRE+
Sbjct: 33 DMPPTPSKPMSPLVQPRTASSFPVGNPGGXXXXXXXXXXXVGFRATADGKGGARGGSTAAXXXXXSSLSSVGSIADIGGDLGDGNAPVCTSIALRVSPIVRMPAEEFSARSLGGMFGAKSQEEVEAEEVWHRGSTALMREDTISPPAHSSSPQPXXXXXXXXXXXXXXXXXXGGVPSTARPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFSVEAASKDVGDSLSGRGGSERARPGNQKWREIRDKALAANGGSFTTARRLANSGASPKPNLEFKRRYDLRLQQLTLRRNSASPTPSSLAGGIRKGGIIRKSKSDCSGDEGXXXXXXXXXXXIRSIGTPXXXXXRMQAKXXEVAEXXAIAARAVXARDLATQRAAEXXXXXXXXVTNAEELAAAVARGKAAQSPGTDTP---AXXXXXXXXXXXXXXXXXXXXXXHHPAGGAVEVAPXXXXXXXXXXXXXSGVSPVAEREA-TDGVKDDGLVAATVSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT-PGPVPMAVSGAESAESAGVAQQQAQPAPALLATTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVPATVVAATPAVTPKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------EKRAVSSSPCASPRILYGGRDFRARLLAPGLGAGGTLGGRREL 731
BLAST of mRNA_E-fasciculatus_F_contig14864.3464.1 vs. uniprot
Match: A0A6H5L1Z8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z8_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 1.980e-11 Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 2
Query: 2 TCTRLHRSRCPLSYSRGRHRHSRWGTPAAAAA---AAWAFEQ*QTGRG 136
TC RLHR+RCPLS+SR RHR SRWGTPAAAAA AAWAFEQ QTGRG
Sbjct: 191 TCLRLHRNRCPLSFSRKRHRASRWGTPAAAAAPAAAAWAFEQQQTGRG 238 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14864.3464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14864.3464.1 >prot_E-fasciculatus_F_contig14864.3464.1 ID=prot_E-fasciculatus_F_contig14864.3464.1|Name=mRNA_E-fasciculatus_F_contig14864.3464.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=661bp MHPTPSKPMSPLVQPRTASAFPVGNPGGGGSSGVGFRAIADGEGGAGGGSback to top mRNA from alignment at E-fasciculatus_F_contig14864:20..3163+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14864.3464.1 ID=mRNA_E-fasciculatus_F_contig14864.3464.1|Name=mRNA_E-fasciculatus_F_contig14864.3464.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3144bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14864:20..3163+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14864:20..3163+ >mRNA_E-fasciculatus_F_contig14864.3464.1 ID=mRNA_E-fasciculatus_F_contig14864.3464.1|Name=mRNA_E-fasciculatus_F_contig14864.3464.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3966bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14864:20..3163+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |