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Homology
BLAST of mRNA_E-fasciculatus_F_contig14857.3460.1 vs. uniprot
Match: A0A6H5JI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI20_9PHAE) HSP 1 Score: 229 bits (585), Expect = 1.690e-61 Identity = 413/652 (63.34%), Postives = 429/652 (65.80%), Query Frame = 1
Query: 1 MNVNGDEDGG-KSTPAGTAXXXXXXXXXAGGLDVLGQAVESATAAPPGLAP-----LSSVPASXXXXXXXXXXXAATTVPAASSACLVTPQETGVAEHPNAEEIQSNNIITTMPFITPLLVGATPGGGVAPAESAAPGIPSCGDNVAISAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGLESATAVANXXXXXXXXXXGSTAVPXXXXXXXXXXXXXXXXXXXXXXXXXXPAETTTIATKTAPATTSEGGGCPTPVPAGVMTTGGTSLAPAXXXXXXXXXXXXXVATTLPTXXXXXXXXXXXXXXXXNTPGEGGDDGTLAARADSSASGVAVTPAAVTPLA-PGAXXXXXXXXXGAELSDGTXXXXXXXXXXXXXASSPSPSXXXXXXXVXXXXXGVAAEAAVRPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLVGAGDAQQAEDTEERGQGAGQEXXXXXXXXXXXXXXXXR-LRAGKRKALDMLRTDAEAGEDKGKRERRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTPRKNQTQKQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVGA 1932
MN+NGD+DGG KSTPAGTA AGGLDVLGQAVESATAA PGLAP LS PA+ XXXXXX CLVTPQ T V E +A+EIQ++NIITTMPFITP LVG T GG APAESAAPG PSCG+NVA++ XXXXXXXXXXXXXXXX AGLESATAVAN XXXXXX XXXXXXXXXXXX XXXXXX TT T T TSEGGGCPTPVPA +TTGG SLAP XXXXXXXXXXX XXXXXX NTP E GDD +LAARADSSA+ V PG GAELSD T SS XXXXXXX XXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LL+VGAGDAQQA DTE +GQGA QE XXXXXXXXXX R LRA KRKALDMLR + EAGEDK KR XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A TPRKNQ KQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKV A
Sbjct: 1 MNLNGDDDGGNKSTPAGTADASASSSSAAGGLDVLGQAVESATAASPGLAPPXXXXLSPAPAASTAGPXXXXXXXXXXXXXXXXXCLVTPQGT-VVELSDAQEIQTHNIITTMPFITPPLVGTTADGGAAPAESAAPGSPSCGENVAVA--DVAAGAAPSHELGNRGGGDSXXXXXXXXXXXXXXXXXAGLESATAVANTDVTXXXXXXXXXXXXXXXXXXXXXXXXEAGIRTSTXXXXXXXXXETTXITPT----TSEGGGCPTPVPAVAVTTGGISLAPTTMXXXXXXXXXXXXXXXX------XXXXXXGTQTPTNTPAEDGDDASLAARADSSAAAVTXXXXXXXXXXXPGVATAAGTGAAGAELSDRTGSGAGAAALD----SSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLVVGAGDAQQAVDTEGQGQGAKQEGRKGXXXXXXXXXXRPRRLRADKRKALDMLRMEPEAGEDKSKRGX-XXXXXXXXXXXXXXXXXXXXXXXXXXXDELWDAGETAAMSPATALLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATPRKNQNHKQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKA 634
BLAST of mRNA_E-fasciculatus_F_contig14857.3460.1 vs. uniprot
Match: D7G2F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F9_ECTSI) HSP 1 Score: 121 bits (304), Expect = 1.510e-25 Identity = 156/196 (79.59%), Postives = 158/196 (80.61%), Query Frame = 1
Query: 1354 LLLVGAGDAQQAEDTEERGQGAGQEXXXXXXXXXXXXXXXXR---LRAGKRKALDMLRTDAEAGEDKGKRERRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTPRKNQTQKQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVGA 1932
LLLVGAGDAQQA TEERGQGA QE XXXXXXXXXXXXXR LRA KRKALDMLRT++E GEDK KR R S XXXXXXXXXXXXXX XXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTPRKNQ QKQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKV A
Sbjct: 77 LLLVGAGDAQQAVGTEERGQGAKQEGRKXXXXXXXXXXXXXRPRRLRADKRKALDMLRTESEPGEDKSKRGRMSQXXXXXXXXXXXXXXAVXXXXXXXXXELRDAGETEEISPATALLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTPRKNQNQKQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKA 272
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-27_001430.1 |
| Exons | 1 |
| Model size | 1932 |
| Cds size | 1932 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14857.3460.1 >prot_E-fasciculatus_F_contig14857.3460.1 ID=prot_E-fasciculatus_F_contig14857.3460.1|Name=mRNA_E-fasciculatus_F_contig14857.3460.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=644bp
MNVNGDEDGGKSTPAGTAAAASASSSAAGGLDVLGQAVESATAAPPGLAP LSSVPASSTAGPAAPVPVAATTVPAASSACLVTPQETGVAEHPNAEEIQS NNIITTMPFITPLLVGATPGGGVAPAESAAPGIPSCGDNVAISAAAAAAA AAPSHELGNRGGGDSAEDGSTAAAEKAGSPPTAGLESATAVANTNTTTTS SAAGSTAVPAAPAASAAPAAEAGITSSTAATPAEPPAETTTIATKTAPAT TSEGGGCPTPVPAGVMTTGGTSLAPATTTTTTTTALPPPVATTLPTPTAS GAGSGVGTPAPTNTPGEGGDDGTLAARADSSASGVAVTPAAVTPLAPGAA TAAGTGAPGAELSDGTGSGAGAAALDSSAASSPSPSSSSSKAKVVAAASG VAAEAAVRPSSGESSSGDSSTLPPPPPSSSADPPEGASAQSRGGLAAAAA ELLLVGAGDAQQAEDTEERGQGAGQEGRKGKQQRQQRVQRPQRLRAGKRK ALDMLRTDAEAGEDKGKRERRSPEEEEEEREGEERQPAVAAVEEEEEEEE RGAGDTEETPSAMSLLPPPPPDEPPQSAKRKRQSPKKQLQQRQAAAAAKT ATTPRKNQTQKQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVGA back to topmRNA from alignment at E-fasciculatus_F_contig14857:1169..3100+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14857.3460.1 ID=mRNA_E-fasciculatus_F_contig14857.3460.1|Name=mRNA_E-fasciculatus_F_contig14857.3460.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1932bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14857:1169..3100+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGAACGTGAACGGTGACGAAGATGGCGGCAAATCGACCCCGGCGGGCAC
CGCTGCTGCTGCGAGTGCAAGCAGCAGCGCAGCCGGTGGTCTTGATGTGC
TGGGACAGGCGGTCGAGTCCGCCACGGCAGCGCCGCCAGGATTAGCTCCT
CTGTCATCGGTGCCCGCGTCGTCAACTGCCGGGCCAGCAGCACCAGTACC
AGTAGCGGCAACAACGGTTCCGGCGGCGTCTTCGGCTTGTTTGGTGACCC
CTCAAGAAACAGGCGTGGCGGAGCATCCGAACGCCGAGGAGATCCAGAGC
AACAACATCATCACCACCATGCCGTTCATTACTCCGCTTCTTGTGGGGGC
TACGCCAGGCGGCGGCGTCGCTCCGGCAGAGAGCGCGGCGCCGGGGATCC
CGTCTTGCGGCGATAATGTCGCCATCTCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTCCGTCTCACGAACTGGGCAACAGGGGCGGAGGCGACTCTGCCGA
GGATGGTAGTACCGCTGCTGCAGAAAAGGCAGGATCACCGCCGACAGCCG
GTTTGGAATCCGCAACGGCGGTGGCGAACACGAACACGACGACAACAAGC
TCCGCTGCCGGTTCCACTGCTGTTCCTGCCGCACCCGCTGCTTCTGCCGC
GCCGGCGGCGGAGGCGGGAATCACCTCCTCAACCGCTGCCACACCTGCGG
AGCCCCCCGCAGAAACGACGACCATCGCGACGAAGACTGCCCCTGCAACT
ACTAGCGAAGGAGGCGGCTGCCCGACTCCTGTTCCTGCGGGAGTGATGAC
GACAGGAGGAACCAGTCTCGCACCAGCGACGACGACGACGACGACGACGA
CTGCCCTACCTCCTCCGGTAGCGACCACACTACCGACACCGACGGCGAGC
GGAGCCGGCAGCGGCGTCGGAACGCCGGCGCCCACAAACACCCCTGGTGA
AGGTGGCGATGATGGCACCCTGGCCGCTCGTGCAGACTCTAGCGCCTCCG
GTGTTGCCGTTACACCGGCGGCAGTGACACCACTGGCACCTGGAGCGGCC
ACGGCGGCGGGGACAGGTGCGCCCGGCGCCGAGCTGAGTGATGGGACCGG
TAGTGGTGCTGGTGCTGCCGCTCTTGACAGTAGTGCCGCGTCTTCCCCCT
CCCCCTCCTCCTCCTCCTCGAAAGCGAAGGTAGTGGCGGCAGCATCAGGA
GTCGCCGCGGAAGCCGCTGTCAGGCCCTCCTCCGGCGAGAGCAGCAGTGG
TGACAGCAGTACCCTGCCACCACCACCGCCTTCCTCATCCGCCGACCCAC
CCGAAGGTGCGTCGGCGCAGAGCCGAGGCGGGCTTGCGGCGGCGGCGGCG
GAGCTGCTGCTGGTGGGCGCTGGTGATGCGCAGCAGGCGGAGGACACGGA
AGAGCGGGGGCAAGGCGCGGGGCAGGAGGGGAGGAAAGGAAAGCAGCAGC
GGCAGCAGAGGGTGCAACGCCCGCAGCGGCTTCGGGCCGGCAAGAGAAAG
GCGCTGGACATGCTGCGCACGGACGCGGAGGCTGGTGAGGACAAGGGTAA
ACGTGAAAGGAGAAGCCCGGAGGAGGAAGAAGAGGAACGGGAAGGGGAGG
AGAGGCAACCGGCGGTGGCGGCGGTGGAAGAGGAGGAGGAGGAAGAAGAG
AGGGGCGCTGGAGACACAGAAGAAACGCCTTCGGCCATGTCCCTCCTACC
GCCGCCGCCACCGGACGAGCCACCGCAGTCGGCGAAGCGAAAAAGGCAGT
CGCCGAAAAAGCAGCTGCAGCAGCGCCAAGCAGCGGCAGCAGCGAAAACG
GCGACCACACCACGCAAGAACCAAACGCAGAAGCAGAGGAAGCTACAGCT
GCAACCACCCAACTTCGAAATCGAAAAGCACGGGGGAGGGAAAATCCGCA
AGCGCTACTCCTTAGATTTCAAGGTGGGTGCG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14857:1169..3100+ >mRNA_E-fasciculatus_F_contig14857.3460.1 ID=mRNA_E-fasciculatus_F_contig14857.3460.1|Name=mRNA_E-fasciculatus_F_contig14857.3460.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3864bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14857:1169..3100+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGAACGTGAACGGTGACGAAGATGGCGGCAAATCGACCCCGGCGGGCAC CGCTGCTGCTGCGAGTGCAAGCAGCAGCGCAGCCGGTGGTCTTGATGTGC TGGGACAGGCGGTCGAGTCCGCCACGGCAGCGCCGCCAGGATTAGCTCCT CTGTCATCGGTGCCCGCGTCGTCAACTGCCGGGCCAGCAGCACCAGTACC AGTAGCGGCAACAACGGTTCCGGCGGCGTCTTCGGCTTGTTTGGTGACCC CTCAAGAAACAGGCGTGGCGGAGCATCCGAACGCCGAGGAGATCCAGAGC AACAACATCATCACCACCATGCCGTTCATTACTCCGCTTCTTGTGGGGGC TACGCCAGGCGGCGGCGTCGCTCCGGCAGAGAGCGCGGCGCCGGGGATCC CGTCTTGCGGCGATAATGTCGCCATCTCTGCTGCTGCTGCTGCTGCTGCT GCTGCTCCGTCTCACGAACTGGGCAACAGGGGCGGAGGCGACTCTGCCGA GGATGGTAGTACCGCTGCTGCAGAAAAGGCAGGATCACCGCCGACAGCCG GTTTGGAATCCGCAACGGCGGTGGCGAACACGAACACGACGACAACAAGC TCCGCTGCCGGTTCCACTGCTGTTCCTGCCGCACCCGCTGCTTCTGCCGC GCCGGCGGCGGAGGCGGGAATCACCTCCTCAACCGCTGCCACACCTGCGG AGCCCCCCGCAGAAACGACGACCATCGCGACGAAGACTGCCCCTGCAACT ACTAGCGAAGGAGGCGGCTGCCCGACTCCTGTTCCTGCGGGAGTGATGAC GACAGGAGGAACCAGTCTCGCACCAGCGACGACGACGACGACGACGACGA CTGCCCTACCTCCTCCGGTAGCGACCACACTACCGACACCGACGGCGAGC GGAGCCGGCAGCGGCGTCGGAACGCCGGCGCCCACAAACACCCCTGGTGA AGGTGGCGATGATGGCACCCTGGCCGCTCGTGCAGACTCTAGCGCCTCCG GTGTTGCCGTTACACCGGCGGCAGTGACACCACTGGCACCTGGAGCGGCC ACGGCGGCGGGGACAGGTGCGCCCGGCGCCGAGCTGAGTGATGGGACCGG TAGTGGTGCTGGTGCTGCCGCTCTTGACAGTAGTGCCGCGTCTTCCCCCT CCCCCTCCTCCTCCTCCTCGAAAGCGAAGGTAGTGGCGGCAGCATCAGGA GTCGCCGCGGAAGCCGCTGTCAGGCCCTCCTCCGGCGAGAGCAGCAGTGG TGACAGCAGTACCCTGCCACCACCACCGCCTTCCTCATCCGCCGACCCAC CCGAAGGTGCGTCGGCGCAGAGCCGAGGCGGGCTTGCGGCGGCGGCGGCG GAGCTGCTGCTGGTGGGCGCTGGTGATGCGCAGCAGGCGGAGGACACGGA AGAGCGGGGGCAAGGCGCGGGGCAGGAGGGGAGGAAAGGAAAGCAGCAGC GGCAGCAGAGGGTGCAACGCCCGCAGCGGCTTCGGGCCGGCAAGAGAAAG GCGCTGGACATGCTGCGCACGGACGCGGAGGCTGGTGAGGACAAGGGTAA ACGTGAAAGGAGAAGCCCGGAGGAGGAAGAAGAGGAACGGGAAGGGGAGG AGAGGCAACCGGCGGTGGCGGCGGTGGAAGAGGAGGAGGAGGAAGAAGAG AGGGGCGCTGGAGACACAGAAGAAACGCCTTCGGCCATGTCCCTCCTACC GCCGCCGCCACCGGACGAGCCACCGCAGTCGGCGAAGCGAAAAAGGCAGT CGCCGAAAAAGCAGCTGCAGCAGCGCCAAGCAGCGGCAGCAGCGAAAACG GCGACCACACCACGCAAGAACCAAACGCAGAAGCAGAGGAAGCTACAGCT GCAACCACCCAACTTCGAAATCGAAAAGCACGGGGGAGGGAAAATCCGCA AGCGCTACTCCTTAGATTTCAAGGTGGGTGCGATGAACGTGAACGGTGAC GAAGATGGCGGCAAATCGACCCCGGCGGGCACCGCTGCTGCTGCGAGTGC AAGCAGCAGCGCAGCCGGTGGTCTTGATGTGCTGGGACAGGCGGTCGAGT CCGCCACGGCAGCGCCGCCAGGATTAGCTCCTCTGTCATCGGTGCCCGCG TCGTCAACTGCCGGGCCAGCAGCACCAGTACCAGTAGCGGCAACAACGGT TCCGGCGGCGTCTTCGGCTTGTTTGGTGACCCCTCAAGAAACAGGCGTGG CGGAGCATCCGAACGCCGAGGAGATCCAGAGCAACAACATCATCACCACC ATGCCGTTCATTACTCCGCTTCTTGTGGGGGCTACGCCAGGCGGCGGCGT CGCTCCGGCAGAGAGCGCGGCGCCGGGGATCCCGTCTTGCGGCGATAATG TCGCCATCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCGTCTCACGAA CTGGGCAACAGGGGCGGAGGCGACTCTGCCGAGGATGGTAGTACCGCTGC TGCAGAAAAGGCAGGATCACCGCCGACAGCCGGTTTGGAATCCGCAACGG CGGTGGCGAACACGAACACGACGACAACAAGCTCCGCTGCCGGTTCCACT GCTGTTCCTGCCGCACCCGCTGCTTCTGCCGCGCCGGCGGCGGAGGCGGG AATCACCTCCTCAACCGCTGCCACACCTGCGGAGCCCCCCGCAGAAACGA CGACCATCGCGACGAAGACTGCCCCTGCAACTACTAGCGAAGGAGGCGGC TGCCCGACTCCTGTTCCTGCGGGAGTGATGACGACAGGAGGAACCAGTCT CGCACCAGCGACGACGACGACGACGACGACGACTGCCCTACCTCCTCCGG TAGCGACCACACTACCGACACCGACGGCGAGCGGAGCCGGCAGCGGCGTC GGAACGCCGGCGCCCACAAACACCCCTGGTGAAGGTGGCGATGATGGCAC CCTGGCCGCTCGTGCAGACTCTAGCGCCTCCGGTGTTGCCGTTACACCGG CGGCAGTGACACCACTGGCACCTGGAGCGGCCACGGCGGCGGGGACAGGT GCGCCCGGCGCCGAGCTGAGTGATGGGACCGGTAGTGGTGCTGGTGCTGC CGCTCTTGACAGTAGTGCCGCGTCTTCCCCCTCCCCCTCCTCCTCCTCCT CGAAAGCGAAGGTAGTGGCGGCAGCATCAGGAGTCGCCGCGGAAGCCGCT GTCAGGCCCTCCTCCGGCGAGAGCAGCAGTGGTGACAGCAGTACCCTGCC ACCACCACCGCCTTCCTCATCCGCCGACCCACCCGAAGGTGCGTCGGCGC AGAGCCGAGGCGGGCTTGCGGCGGCGGCGGCGGAGCTGCTGCTGGTGGGC GCTGGTGATGCGCAGCAGGCGGAGGACACGGAAGAGCGGGGGCAAGGCGC GGGGCAGGAGGGGAGGAAAGGAAAGCAGCAGCGGCAGCAGAGGGTGCAAC GCCCGCAGCGGCTTCGGGCCGGCAAGAGAAAGGCGCTGGACATGCTGCGC ACGGACGCGGAGGCTGGTGAGGACAAGGGTAAACGTGAAAGGAGAAGCCC GGAGGAGGAAGAAGAGGAACGGGAAGGGGAGGAGAGGCAACCGGCGGTGG CGGCGGTGGAAGAGGAGGAGGAGGAAGAAGAGAGGGGCGCTGGAGACACA GAAGAAACGCCTTCGGCCATGTCCCTCCTACCGCCGCCGCCACCGGACGA GCCACCGCAGTCGGCGAAGCGAAAAAGGCAGTCGCCGAAAAAGCAGCTGC AGCAGCGCCAAGCAGCGGCAGCAGCGAAAACGGCGACCACACCACGCAAG AACCAAACGCAGAAGCAGAGGAAGCTACAGCTGCAACCACCCAACTTCGA AATCGAAAAGCACGGGGGAGGGAAAATCCGCAAGCGCTACTCCTTAGATT TCAAGGTGGGTGCG back to top
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