mRNA_E-fasciculatus_F_contig14856.3459.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14856.3459.1
Unique NamemRNA_E-fasciculatus_F_contig14856.3459.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14856.3459.1 vs. uniprot
Match: A0A6H5L011_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L011_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 1.730e-123
Identity = 237/284 (83.45%), Postives = 246/284 (86.62%), Query Frame = 2 
Query:   17 AQASTRVSSVSMMDQSRGPGFLSGRSDAILQNMMDVWGRHASSGATVTYAEGSGE----QSKERSESTTAAQEEEDMCFVYPVLQPALRMKGGRDGRGGSSLPWSGEESRTFLRFSVFFANPFNSLMDALQGQVLVPLSALAGKEEEGGVQPELRGWFDVSPADDKFLSQATXXXXXXXXXXXXXXXXSPAHSSETFSTGVDDGRNARNGTDNTGSXXXXXKHAPDGRSTSSYDNNGGGG-MGAIFLRLQLTLPDGKAAAI--TEEDKEASLALQTLLGENALG 847
            AQASTRVSSVS+MDQSRGPGFLSG SDAILQNMMDVWGRHASS A VT+ EGSGE    +SKERSESTTAAQEEEDMCFVYPVLQP LR +  RDGRGG SLPWS EESRTFLRFSVFFANPFNSLMDALQGQVLVPLSALAGKEEEGGVQPELRGWFDVSP DDKF+SQATXXXXXXXXXXXXX   SPAHS+ETFS+GVDDGRNARN T+NTGS      H  DGR T SYDN G    MGA+FLRLQLTLPDGKAAA   TEEDKEASLALQTLLGEN LG
Sbjct: 1557 AQASTRVSSVSIMDQSRGPGFLSGGSDAILQNMMDVWGRHASSQAAVTHVEGSGERSAEESKERSESTTAAQEEEDMCFVYPVLQPVLRRRA-RDGRGGGSLPWSSEESRTFLRFSVFFANPFNSLMDALQGQVLVPLSALAGKEEEGGVQPELRGWFDVSPVDDKFVSQATXXXXXXXXXXXXX---SPAHSNETFSSGVDDGRNARNDTNNTGSSS---NHVRDGRITDSYDNGGXXXXMGALFLRLQLTLPDGKAAAGGGTEEDKEASLALQTLLGENTLG 1833
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BLAST of mRNA_E-fasciculatus_F_contig14856.3459.1 vs. uniprot
Match: D7G411_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G411_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 6.570e-83
Identity = 178/300 (59.33%), Postives = 182/300 (60.67%), Query Frame = 2 
Query:   14 GAQASTRVSSVSMMDQSRGPGFLSGRSDAILQNMMDVWGRHASSGATVTYAEGSGE----QSKERSESTTAAQEEEDMCFVYPVLQPALRMKGGRDGRGGSSLPWSGEESRTFLRFSVFFANPFNSLMDALQGQVLVPLSALAGKEEEGGVQPELRGWFDVSPADDKFLSQATXXXXXXXXXXXXXXXXSPAHSSETFSTGVDDGRNARNGTDNTGSXXXXXKHAPDGRSTSSYDNNGGGGMGAIFLRLQLTLPDGKAAAI--TEEDKEASLALQTLLGENALGGGGDKGDTGGVAASSG 895
            GAQASTRVSSVSMMDQSRGPGFLSG SDAILQNMMDVWGRHASSGA VT+ EGSGE    QS++R ESTTA QEEEDMCFVYPVLQP LR +  RDGRGG SLPWSGEESRTFLRFSVFFANPFNSLMDALQGQVLVPLSALAGKEEEGGVQPEL                                                                                                TLPDGKAAA   TEEDKEASLALQTLLGEN LGG  DKGDTGG  ASSG
Sbjct: 1511 GAQASTRVSSVSMMDQSRGPGFLSGGSDAILQNMMDVWGRHASSGAAVTHVEGSGERSAEQSEQRPESTTAGQEEEDMCFVYPVLQPVLRRRA-RDGRGGGSLPWSGEESRTFLRFSVFFANPFNSLMDALQGQVLVPLSALAGKEEEGGVQPEL------------------------------------------------------------------------------------------------TLPDGKAAAAVGTEEDKEASLALQTLLGENTLGGVEDKGDTGGAVASSG 1713
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14856.3459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L011_9PHAE1.730e-12383.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G411_ECTSI6.570e-8359.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14856contigE-fasciculatus_F_contig14856:12..2979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size898
Cds size897
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14856.3459.1prot_E-fasciculatus_F_contig14856.3459.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14856 13..2979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927967.011227-CDS-E-fasciculatus_F_contig14856:12..4461622927967.011227-CDS-E-fasciculatus_F_contig14856:12..446Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14856 13..446 -
1695995770.990508-CDS-E-fasciculatus_F_contig14856:12..4461695995770.990508-CDS-E-fasciculatus_F_contig14856:12..446Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14856 13..446 -
1622927967.0331044-CDS-E-fasciculatus_F_contig14856:1223..13081622927967.0331044-CDS-E-fasciculatus_F_contig14856:1223..1308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14856 1224..1308 -
1695995770.999454-CDS-E-fasciculatus_F_contig14856:1223..13081695995770.999454-CDS-E-fasciculatus_F_contig14856:1223..1308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14856 1224..1308 -
1622927967.0489783-CDS-E-fasciculatus_F_contig14856:1995..22641622927967.0489783-CDS-E-fasciculatus_F_contig14856:1995..2264Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14856 1996..2264 -
1695995771.0082417-CDS-E-fasciculatus_F_contig14856:1995..22641695995771.0082417-CDS-E-fasciculatus_F_contig14856:1995..2264Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14856 1996..2264 -
1622927967.0640085-CDS-E-fasciculatus_F_contig14856:2870..29791622927967.0640085-CDS-E-fasciculatus_F_contig14856:2870..2979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14856 2871..2979 -
1695995771.01922-CDS-E-fasciculatus_F_contig14856:2870..29791695995771.01922-CDS-E-fasciculatus_F_contig14856:2870..2979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14856 2871..2979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14856.3459.1

>prot_E-fasciculatus_F_contig14856.3459.1 ID=prot_E-fasciculatus_F_contig14856.3459.1|Name=mRNA_E-fasciculatus_F_contig14856.3459.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=299bp
WGCWGSAGKHACVVRVDDGPEQRARVSVGQERCYSPEHDGCLGQTRLLGG
HSDVRRRVWGTVQGTLRIDDGGSGRGGHVLRVPGVAASAEDERRKGRPRG
QQLAVVGRRVENVPPVLGVLREPVQQPHGRFAGPGFGPAVGPSRQGRRRR
SSARATGVVRCVSCRRQVPLSSNDDDDGSSSSSSSSTTTKPCSLQRNLLD
RSRRRPKRSQRHRQHRQQQQQQQTRPRRSKHQQLRQQRRWRHGRHFPSLA
ADPPGRQGRRHHRGGQRSLLGATNPARGKRTRGWWGQGGHGGRRGIIRH
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mRNA from alignment at E-fasciculatus_F_contig14856:12..2979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14856.3459.1 ID=mRNA_E-fasciculatus_F_contig14856.3459.1|Name=mRNA_E-fasciculatus_F_contig14856.3459.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2968bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14856:12..2979- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGGGGTGTTGGGGGAGCGCAGGCAAGCACGCGTGTGTCGTCCGTGTCGA
TGATGGACCAGAGCAGAGGGCCCGGGTTTCTGTCGGGCAGGAGCGATGCT
ATTCTCCAGGTGAGGGGGCTTCGTGGTATCGACGCTCAGCAGAAGACTAA
GACTTCCAACAGTAGCTACAACATAACATAATTCTAGGGCTGTCTGTCTT
GCGCTGGAATGCGTGCACCGGGTGGTATGCCGAAGTTGGATGGAATGGGC
GGCGGCGATAACTTCAGCAACACCGTCGCTTTTTTTTTTTTGGTACTTTA
TTTTAGCTTTGCTGTGCCACACGCCCCCCAGCGTTGGTTGTGGGAAGTAT
ATGGTATGGTACACCGGCGAGAGAATCGTGCATTGCTGCCGATATCATGA
TCGATAATCCTCTGATGTCCCAACGAAGTTTTTGAGGGATGTTTGTCGCA
CAACAGAGCAGACGGGGCTTGGAGCACATGCTGTAACCATGATGTAGCTA
ACGCTGGTACTGCTGGTACTGCTGCTGCTGCTGCTGCTGCCCTCCATGGG
TTGCCTTGGTTCTCATCTCGAAACTGCCGTGGAATATCCGCGAAGAACAT
GGAAATCCCGAAGAACGCGACACTTCTTGTCTCCCCGCCTCACCACTCGT
CCTCCTTGTTTCCTCACCACTCGTCCTCCTTGTTTCCTCACCACTCGACC
TCCTTGTTTCCCCAGAACATGATGGATGTCTGGGGCAGACACGCCTCCTC
GGGGGCCACAGTGACGTACGCAGAAGGGTCTGGGGAACAGTCCAAGGAAC
GCTCCGAATCGACGACGGCGGCTCAGGAAGAGGAGGACATGTGCTTCGTG
TACCCGGTGTTGCAGCCAGCGCTGAGGATGAAAGGAGGAAGGGACGGCCG
CGGGGGCAGCAGCTTGCCGTGGTCGGGCGAAGAGTCGAGAACGTTCCTCC
GGTTCTCGGTGTTCTTCGCGAACCCGTTCAACAGGTGAGGGGGCGGTATC
CCGTGTACGGTTTACGGGACGAGCATGCCGGTACATCGCCTCGGTGTTTG
ATTGCTCTCCGCCAGCGGAAAGAGAGGGCGTGCGATTCACGGTCCAACGA
CAAAGTTGCAAAAGCAAGGTCAAGACAGTTGCTTTGTTGTGACGGTGGTC
GGTATATCGCGAGCACCTTGTCTGGAGAGCAGAAGCGGTACAGGGGGCGG
TGGTCTGTCGCGTTGACAAAAGGTGCACGGTACAAAAGTGAAATATCATC
ACTCTTTGGACCGATGTAGCCGCCAAGGTTGGGTCGGATTCGACTGCTAC
TTGCTCGTTATTTTTGTGATGGCTTCTACACGGCCGATACAAGCGTCACC
AGAAACGAAAATCATGTCTAACAGCACGTTTGATCTCGTGCGATTCTAAA
GTTGAAATCGGACCCCCCGCGCACCCTCCATGCGACTCGCCGAATACCTC
ACGGTGCTTTGCGCTTGGTGATGTGGTAGCCTGGTCCGATGAAAACCCGG
TGTGCCCCGCCCTGACCTTGTAGGGATGCGAGGTCAATGGTCAAACGGCT
ACGGCATGCACGGCGATGAGTATGAGTACACCCCCACCCCCTCCCTGCGA
CTAACATCGCTCTCCGTGCAACCTGCCGTATTTGCTGCTGTCGGTCTCGG
CGATCGTCGTTGTCGCTCCAGCCTCATGGACGCTTTGCAGGGCCAGGTTT
TGGTCCCGCTGTCGGCCCTAGCCGGCAAGGAAGAAGAAGGCGGAGTTCAG
CCCGAGGTAGGCCTGCGGTGGTCGGGAATGACACCGTAAGTTGACATGAC
GCAAGATAATACACTCCCTGGGGCGAATGAAAATTAAAAAATTTCGATTA
CTCCACGACGAAGAGGATGCCAAGACCATATGATAGGTTGTTGGAAAGCT
CTCTCTCGACGGGACGGATCCCACGCCTTCCGCCATTTTCGGCACCATCA
CCGCTGTTGGTTTTGCCGCAGAGTTGTCGAGCTCTGCAAATCGGTACAGG
AGCTGTGGTATCGTATGGAACTACGGTACTGGGTTGTATATGCAGATTTC
GTCCCAAAAAACTGAAAACTAAAAAATACTCACAACAAAAAACACACAGT
ATAGTGTTGCGTGGTGTTGCGCGTGGAAAAAAACAAGGACACAGGACCGA
CAAACACACATATCACAGATCCACACGACCACACGCACGATGTCTGTACA
CTGCGATGCTGTATCACGAATGATGCAGACAGAGATGTCGTAGACACCAA
GTGTTGCATGTTGGTTGGTGTTGCATTGAGTCTACAGCGATGCACACTTT
CGGCACATAGTACATCATTGGCAGGCTTGAAGTTGAGGGGTGATGAATTG
CGAACGCCTTCGTTCATGGCCCTCCGGACTTCGTGTGAGTCGTGTGCACC
ACGCGCTGTTCCGCCGATTAGCTGTCAGGAAGCTGTTCGTTGATTTTTGG
TGAAAAATTCTCCCCTCTCTCAACCCCCTCCGCCTCACGTACCTAACCAT
GTTGTCCGTTGCCATGCCCAACACCCTTTGTAGCTACGGGGGTGGTTCGA
TGTGTCTCCTGCCGACGACAAGTTCCTCTCTCAAGCAACGACGACGACGA
CGGTAGCAGCAGCAGCAGCAGCAGCAGCACCACCACCAAGCCCTGCTCAC
TCCAGCGAAACCTTCTCGACCGGAGTCGACGACGGCCGAAACGCTCGCAA
CGGCACCGACAACACCGGCAGCAGCAGCAGCAGCAGCAAACACGCCCCCG
ACGGTCGAAGCACCAGCAGCTACGACAACAACGGCGGTGGCGGCATGGGC
GCCATTTTCCTTCGCTTGCAGCTGACCCTCCCGGACGGCAAGGCCGCCGC
CATCACCGAGGAGGACAAAGAAGCCTCCTTGGCGCTACAAACCCTGCTCG
GGGAAAACGCACTCGGGGGTGGTGGGGACAAGGGGGACACGGGGGGCGTC
GCGGCATCATCCGGCACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14856:12..2979-

>mRNA_E-fasciculatus_F_contig14856.3459.1 ID=mRNA_E-fasciculatus_F_contig14856.3459.1|Name=mRNA_E-fasciculatus_F_contig14856.3459.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1794bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14856:12..2979- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGGGGTGTTGGGGGAGCGCAGGCAAGCACGCGTGTGTCGTCCGTGTCGA
TGATGGACCAGAGCAGAGGGCCCGGGTTTCTGTCGGGCAGGAGCGATGCT
ATTCTCCAGTGGGGGTGTTGGGGGAGCGCAGGCAAGCACGCGTGTGTCGT
CCGTGTCGATGATGGACCAGAGCAGAGGGCCCGGGTTTCTGTCGGGCAGG
AGCGATGCTATTCTCCAGAACATGATGGATGTCTGGGGCAGACACGCCTC
CTCGGGGGCCACAGTGACGTACGCAGAAGGGTCTGGGGAACAGTCCAAGG
AACGCTCCGAATCGACGACGGCGGCTCAGGAAGAGGAGGACATGTGCTTC
GTGTACCCGGTGTTGCAGCCAGCGCTGAGGATGAAAGGAGGAAGGGACGG
CCGCGGGGGCAGCAGCTTGCCGTGGTCGGGCGAAGAGTCGAGAACGTTCC
TCCGGTTCTCGGTGTTCTTCGCGAACCCGTTCAACAGAACATGATGGATG
TCTGGGGCAGACACGCCTCCTCGGGGGCCACAGTGACGTACGCAGAAGGG
TCTGGGGAACAGTCCAAGGAACGCTCCGAATCGACGACGGCGGCTCAGGA
AGAGGAGGACATGTGCTTCGTGTACCCGGTGTTGCAGCCAGCGCTGAGGA
TGAAAGGAGGAAGGGACGGCCGCGGGGGCAGCAGCTTGCCGTGGTCGGGC
GAAGAGTCGAGAACGTTCCTCCGGTTCTCGGTGTTCTTCGCGAACCCGTT
CAACAGCCTCATGGACGCTTTGCAGGGCCAGGTTTTGGTCCCGCTGTCGG
CCCTAGCCGGCAAGGAAGAAGAAGGCGGAGTTCAGCCCGAGCCTCATGGA
CGCTTTGCAGGGCCAGGTTTTGGTCCCGCTGTCGGCCCTAGCCGGCAAGG
AAGAAGAAGGCGGAGTTCAGCCCGAGCTACGGGGGTGGTTCGATGTGTCT
CCTGCCGACGACAAGTTCCTCTCTCAAGCAACGACGACGACGACGGTAGC
AGCAGCAGCAGCAGCAGCAGCACCACCACCAAGCCCTGCTCACTCCAGCG
AAACCTTCTCGACCGGAGTCGACGACGGCCGAAACGCTCGCAACGGCACC
GACAACACCGGCAGCAGCAGCAGCAGCAGCAAACACGCCCCCGACGGTCG
AAGCACCAGCAGCTACGACAACAACGGCGGTGGCGGCATGGGCGCCATTT
TCCTTCGCTTGCAGCTGACCCTCCCGGACGGCAAGGCCGCCGCCATCACC
GAGGAGGACAAAGAAGCCTCCTTGGCGCTACAAACCCTGCTCGGGGAAAA
CGCACTCGGGGGTGGTGGGGACAAGGGGGACACGGGGGGCGTCGCGGCAT
CATCCGGCACCTACGGGGGTGGTTCGATGTGTCTCCTGCCGACGACAAGT
TCCTCTCTCAAGCAACGACGACGACGACGGTAGCAGCAGCAGCAGCAGCA
GCAGCACCACCACCAAGCCCTGCTCACTCCAGCGAAACCTTCTCGACCGG
AGTCGACGACGGCCGAAACGCTCGCAACGGCACCGACAACACCGGCAGCA
GCAGCAGCAGCAGCAAACACGCCCCCGACGGTCGAAGCACCAGCAGCTAC
GACAACAACGGCGGTGGCGGCATGGGCGCCATTTTCCTTCGCTTGCAGCT
GACCCTCCCGGACGGCAAGGCCGCCGCCATCACCGAGGAGGACAAAGAAG
CCTCCTTGGCGCTACAAACCCTGCTCGGGGAAAACGCACTCGGGGGTGGT
GGGGACAAGGGGGACACGGGGGGCGTCGCGGCATCATCCGGCAC
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