mRNA_E-fasciculatus_F_contig14855.3458.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14855.3458.1
Unique NamemRNA_E-fasciculatus_F_contig14855.3458.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14855.3458.1 vs. uniprot
Match: D7FNA1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA1_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 1.750e-88
Identity = 141/179 (78.77%), Postives = 148/179 (82.68%), Query Frame = 1 
Query:    1 LEALELFKRVRSLGAYPPPTLCSLLVQVLAAEGMLEEAEEQFADMLKYGMLPSESCATMVIRLRVQRGKLAEAMEVLAIMEGSEYQQKFHRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSILPKESFLLDLIEGVANNRRASSRDSLTQLADHLLDGVSKTLIYPSAPTVKALVE 537
            LEALE FKR+RSLGAYPPPTLCSLLVQ+LAAEGMLEEAEEQFADMLKYGML                      MEVLA+MEG EYQ+KF RPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSI PKESFLLDLIEG+A N + SSRDSL QLADHLLDG+SKTLIYPSAPTVK LVE
Sbjct:  285 LEALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQKKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIAKNHQVSSRDSLAQLADHLLDGMSKTLIYPSAPTVKTLVE 463
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BLAST of mRNA_E-fasciculatus_F_contig14855.3458.1 vs. uniprot
Match: A0A6H5JYJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ8_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 3.660e-66
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:  196 QRGKLAEAMEVLAIMEGSEYQQKFHRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSILPKESFLLDLIEGVANNRRASSRDSLTQLADHLLDGVSKTLIYPSAPTVKALVE 537
            QRGKLAEAMEVLA+MEG EYQQKF RPRFRSYQPVICELLRRGEMDGVMQLW+HM+WHSI PKESFLLDLIEG+ANN  ASSR+SLTQLADHLLDG+SKTLIYPSAPTVKALVE
Sbjct:   10 QRGKLAEAMEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWQHMKWHSIRPKESFLLDLIEGIANNHHASSRNSLTQLADHLLDGMSKTLIYPSAPTVKALVE 123
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14855.3458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA1_ECTSI1.750e-8878.77PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYJ8_9PHAE3.660e-6690.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14855contigE-fasciculatus_F_contig14855:544..3130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score281.2
Seed ortholog evalue3.5e-73
Seed eggNOG ortholog2880.D7FNA1
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZc3h12a-like Ribonuclease NYN domain protein
Ec32 orthologEc-15_003520.1
Exons3
Model size543
Cds size543
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14855.3458.1prot_E-fasciculatus_F_contig14855.3458.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14855 544..3130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927966.9250538-CDS-E-fasciculatus_F_contig14855:543..7411622927966.9250538-CDS-E-fasciculatus_F_contig14855:543..741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14855 544..741 +
1695995770.9597425-CDS-E-fasciculatus_F_contig14855:543..7411695995770.9597425-CDS-E-fasciculatus_F_contig14855:543..741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14855 544..741 +
1622927966.9404826-CDS-E-fasciculatus_F_contig14855:2259..24451622927966.9404826-CDS-E-fasciculatus_F_contig14855:2259..2445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14855 2260..2445 +
1695995770.972962-CDS-E-fasciculatus_F_contig14855:2259..24451695995770.972962-CDS-E-fasciculatus_F_contig14855:2259..2445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14855 2260..2445 +
1622927966.9536757-CDS-E-fasciculatus_F_contig14855:2971..31301622927966.9536757-CDS-E-fasciculatus_F_contig14855:2971..3130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14855 2972..3130 +
1695995770.9816077-CDS-E-fasciculatus_F_contig14855:2971..31301695995770.9816077-CDS-E-fasciculatus_F_contig14855:2971..3130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14855 2972..3130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14855.3458.1

>prot_E-fasciculatus_F_contig14855.3458.1 ID=prot_E-fasciculatus_F_contig14855.3458.1|Name=mRNA_E-fasciculatus_F_contig14855.3458.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=181bp
LEALELFKRVRSLGAYPPPTLCSLLVQVLAAEGMLEEAEEQFADMLKYGM
LPSESCATMVIRLRVQRGKLAEAMEVLAIMEGSEYQQKFHRPRFRSYQPV
ICELLRRGEMDGVMQLWKHMEWHSILPKESFLLDLIEGVANNRRASSRDS
LTQLADHLLDGVSKTLIYPSAPTVKALVEV*
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mRNA from alignment at E-fasciculatus_F_contig14855:544..3130+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14855.3458.1 ID=mRNA_E-fasciculatus_F_contig14855.3458.1|Name=mRNA_E-fasciculatus_F_contig14855.3458.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2587bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14855:544..3130+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGGAAGCGCTGGAGCTCTTCAAGCGCGTCCGCAGCCTGGGCGCGTACCC
GCCACCCACGCTGTGCAGCCTTCTGGTGCAGGTCCTCGCGGCGGAGGGTA
TGCTGGAGGAGGCGGAGGAGCAGTTCGCCGACATGCTCAAGTATGGCATG
CTACCCTCTGAGTCTTGCGCGACCATGGTCATCCGTCTTCGCGTGCAGGT
GAAGAATCACCCCCCCGCCCCTCGCTTCGCGCTTGGTGATGTGCAAAATA
AGCCTGGGCCGGCCAATGCCCCGCATATGTATCGCTCTGTTCCGGGTTTG
TGGGGATACGAAGAGGTCGACGGCCTAACGACTACGGCGTGCACCGCCGT
GAGTAGACGTCGTACTGTCACCAGGTTCGCCCTTGTGAAACGTAGCCTGG
GCCGGCGAAAACCCGGCATGTCGCTCGGTCCCGGCATCGTAAAGGGCTGC
GAAGTCTGTGGTCTTTGCATGAGTACACACACCCCCATGGTATGTATGTC
TGGGCGTGATGAGTTTCTGTGTGCTCGGGTACAGCGGCCCCCAAGCAACC
ATGACATCATAGCGGTCAGGTGGCCCTTGGCGACCCTGGGGTTATTCGCT
CTCTGCTTGTTCGTGAAGGTTTGTCTGTCTTGGCGCACACGTGACCAAGC
AAATCATGGTGGCTTTCTGTCTTGGCATGATGCAGGCGACACCCGCGAGC
AACCATGATGGTGATCTTTCCTAAGCGTGAGGGTGACCCCAAGCAACCAC
ACGAGGGTTGTTACTTTCTCTGAGCGCACCGCTGACCCCAAGCAACGATG
TCGCCTGCATGCAGTCATGCGGGCCTCTGGTGTAGTTTGGCTGTTCTCCG
CACTAGGTCGTGGGCATGGAGGTTCCGTGTGCGATGTTGGCGGGCCGCCG
GGTGTGCAGTGGATCGGACGAAAACGCTGTCACTTCCACACAGCAGCAAA
CAGCACTACAGCGTACGAAACCAACCACGTTGGGTGTCTCTTAGCTCACA
GCTCAGTCCAAGAAACCACGGCAGTTGGCTGTATCAGCGCATGGTGGCCC
GAAGAAACCCCTATGGTCTTCCGTCTTAGCGTGTACCGGTGAACCCAGGC
AAAGCATAGGCTTGTTACTCGGTAGGCTTGATTTTGTGCTGTCAATTTGG
GTTATTATAGTTGAAAAAAGGTTAAGGGTATCGAACTCGCCTACCGAGCA
CCGTACGGACACTCGTACAGCGCACAGCACGGGTTGTGATGTTCCTTGGC
TGGGTTCTGTTCATATGTTCTGCGGACACAGCGAGATGACAGTGAAGAAC
ACGCTGCATGTTTGGAAAGATTTTTCTCCCTTTCTCACACCGCCTCCGGC
TTGTCGAAAACCCGTTGTTGTTGACTGATTTGATTCGATAGCGGACAAAG
TCTCGCGTAAGCGTTGGGCCGACCGAACTGGCATTGGCAGGGGAACGGAA
CAATGACCACAACGTATGCGCCATATACAGAGTAGAGGGCCCTCAATAAC
GCGGGTATGGGCCCGCGGCGCAATCCAGAGGTACCGGCGCTACGCAATGT
ACAGAATGACTCGGTGATTCCGTCCGTGCCCAGCAATTTCACCGGCGTTG
TACAGGACCACGGGCGCTAATCAACCGGCGTTATTGTCGCCCCCCCACTC
TGCTGTATCCGTTTCAACCCGACATCTGTTCGTGGGCTGGGCTGGGCTGG
GCTGGACTCATGGCAGAGAGGGAAGCTGGCCGAGGCAATGGAGGTCTTGG
CCATTATGGAGGGGAGCGAGTACCAACAGAAGTTCCACCGCCCCCGCTTC
CGTTCGTACCAGCCGGTCATCTGCGAGCTTCTGCGGAGGGGGGAGATGGA
CGGGGTGATGCAGCTGTGGAAGCACATGGAGTGGCATAGCATCCTCCCCA
AGGTGTGTGTGTTGGTACCCATCTATTATTGCCCCGTTTTACAGCTTACA
GCCTTTCGGCGTGTATCTACCTGACGTATCAGCCGGGGTCACTCAAGAGG
AAGGTCACACATCGGATTTTTTCATTTTTTGTTCTTGTTTTGTTGCCCCA
CCTTTGTTTCCCCTTGCGGTTCTTCGGCGAATCGGGGCGAAAGATTCAGC
GTGGCGCAGCCTATCGTTAGGATGATACAATCTACCACTACGCTTGTTGT
GTGTGCTTTCGTTCGTCCCAAAACGATAAAGTTGTTTCAGAGCGTTATGT
TTAATTTGGTGACGGAAGTTGCTCTTGCTCCGTTCTTGACGCATCCTGTA
TTTCTTTTACCGTTTTCCTGCTTTTTAATTATTTTTTTTCTGGTGCCGAA
GTCGTTCTGGCCTTACTTAGAAGAACGTTTCCTTCACCCGTTTCCGCGAG
CCGTGCTCTTGCTCCGCACTTGGTTGCGTTGAACCCCATTTTCCTCGTTC
ACGTTTATTTTTGTTTTCTCCGTTGCAGGAGTCATTCTTGCTGGACCTGA
TCGAGGGGGTCGCGAACAACCGCCGCGCCTCCTCCAGAGACTCCCTCACG
CAGCTCGCGGACCACCTCCTGGACGGGGTGTCCAAGACCCTCATTTACCC
CTCCGCACCCACCGTGAAGGCTCTCGTAGAGGTATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14855:544..3130+

>mRNA_E-fasciculatus_F_contig14855.3458.1 ID=mRNA_E-fasciculatus_F_contig14855.3458.1|Name=mRNA_E-fasciculatus_F_contig14855.3458.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1086bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14855:544..3130+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGGAAGCGCTGGAGCTCTTCAAGCGCGTCCGCAGCCTGGGCGCGTACCC
GCCACCCACGCTGTGCAGCCTTCTGGTGCAGGTCCTCGCGGCGGAGGGTA
TGCTGGAGGAGGCGGAGGAGCAGTTCGCCGACATGCTCAAGTATGGCATG
CTACCCTCTGAGTCTTGCGCGACCATGGTCATCCGTCTTCGCGTGCAGTT
GGAAGCGCTGGAGCTCTTCAAGCGCGTCCGCAGCCTGGGCGCGTACCCGC
CACCCACGCTGTGCAGCCTTCTGGTGCAGGTCCTCGCGGCGGAGGGTATG
CTGGAGGAGGCGGAGGAGCAGTTCGCCGACATGCTCAAGTATGGCATGCT
ACCCTCTGAGTCTTGCGCGACCATGGTCATCCGTCTTCGCGTGCAGAGAG
GGAAGCTGGCCGAGGCAATGGAGGTCTTGGCCATTATGGAGGGGAGCGAG
TACCAACAGAAGTTCCACCGCCCCCGCTTCCGTTCGTACCAGCCGGTCAT
CTGCGAGCTTCTGCGGAGGGGGGAGATGGACGGGGTGATGCAGCTGTGGA
AGCACATGGAGTGGCATAGCATCCTCCCCAAGAGAGGGAAGCTGGCCGAG
GCAATGGAGGTCTTGGCCATTATGGAGGGGAGCGAGTACCAACAGAAGTT
CCACCGCCCCCGCTTCCGTTCGTACCAGCCGGTCATCTGCGAGCTTCTGC
GGAGGGGGGAGATGGACGGGGTGATGCAGCTGTGGAAGCACATGGAGTGG
CATAGCATCCTCCCCAAGGAGTCATTCTTGCTGGACCTGATCGAGGGGGT
CGCGAACAACCGCCGCGCCTCCTCCAGAGACTCCCTCACGCAGCTCGCGG
ACCACCTCCTGGACGGGGTGTCCAAGACCCTCATTTACCCCTCCGCACCC
ACCGTGAAGGCTCTCGTAGAGGTATGAGAGTCATTCTTGCTGGACCTGAT
CGAGGGGGTCGCGAACAACCGCCGCGCCTCCTCCAGAGACTCCCTCACGC
AGCTCGCGGACCACCTCCTGGACGGGGTGTCCAAGACCCTCATTTACCCC
TCCGCACCCACCGTGAAGGCTCTCGTAGAGGTATGA
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