mRNA_E-fasciculatus_F_contig14851.3457.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14851.3457.1
Unique NamemRNA_E-fasciculatus_F_contig14851.3457.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14851.3457.1 vs. uniprot
Match: A0A6H5K335_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K335_9PHAE)

HSP 1 Score: 452 bits (1163), Expect = 6.080e-151
Identity = 255/321 (79.44%), Postives = 264/321 (82.24%), Query Frame = 1 
Query:    1 RAIAEELVDSIHASGGRVLTRAKTTSVIVGDERAEGVTVVRESGGXXXXXXXXXXA--VNVMIAGDGLGSVISSIGVIDTFRGLLPRKSAPTTAASGSAXXXXXXXXXXXXXXXXGESVTALGEKDGEGLDPAGFRILRAARPRVHLCVGLQGNWLEDLDGTSSYVHHVRDS-----------------MVEGGGGGHERHEGKLPDWCRISFGESKDSFGWKKETTTVVVTTEMTEGEPEMAKMTIDGVGSMNEPIGPLRYTVQPGRSGRERLRERLLRRLHQDFPQTQGRDEFVMLAEQPRTGLSEGPERYLAKGVRAP 906
            RAIAEELVDS+HASGGRVLTRAK TSVIVG ERAEGVTVVRESGGXXXXXXXXXX   VNVM+AGDGLGSVISSIG+IDTFRGLLPRKS  TT A+  +                GE+VTALGEKDGEGLDPAGFRILRAARPRVHLCVGLQGNWLEDLDGTSSYVHHV                        GGGGHERHEGKLPDWCRISFGESKDS GWKKETT+VVVT EMTE   EMAK+TIDGVGS NEPIGPLRYTVQPGRSGRERLRERLLRRLHQDFPQTQGRDEF+MLAEQPR GLSEGPERYLAKGVRAP
Sbjct:  457 RAIAEELVDSVHASGGRVLTRAKATSVIVGRERAEGVTVVRESGGXXXXXXXXXXXXXVNVMVAGDGLGSVISSIGIIDTFRGLLPRKSPLTTGAASGSATTAAAGDGPAAAGKTGETVTALGEKDGEGLDPAGFRILRAARPRVHLCVGLQGNWLEDLDGTSSYVHHVSGLGYFCGENGFCGERGLVWYATRGGGGHERHEGKLPDWCRISFGESKDSAGWKKETTSVVVTAEMTE---EMAKLTIDGVGSTNEPIGPLRYTVQPGRSGRERLRERLLRRLHQDFPQTQGRDEFIMLAEQPRAGLSEGPERYLAKGVRAP 774
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BLAST of mRNA_E-fasciculatus_F_contig14851.3457.1 vs. uniprot
Match: A0A835Z712_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z712_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.690e-18
Identity = 66/178 (37.08%), Postives = 90/178 (50.56%), Query Frame = 1 
Query:  379 GLDPAGFRILRAARPRVHLCVGLQGNWLEDLDGTSSYVHHVRDSMVEGGGGGHERHEGKLPDWCRISFGESKDSFGWKKETTTVVVTTEMTEGEPEMAKMTIDGVGSMNEPIGPLRYTVQPGRSGR--ERLRERLLRRLHQDFPQTQGRDEFVMLAEQPRTGLSEGPERYLAKGVRAP 906
            G  PAGF  LRAARPR+HLCVGL GNW E LD T +    VRD   +G    HER+  +  +W R+SF  +KD   W    T  VVT E+ +   ++ + +    G+++   G        G S R  +         LH+ +P T+G +E V    + R GLS    R  A G+RAP
Sbjct:  511 GRFPAGFGALRAARPRLHLCVGLAGNWDEALDATPADYLQVRD---DGAARAHERYHDQDSEWLRVSFASAKDPERWWSAHTACVVTCELPD---DVLRASAAAGGTLSAGAGGSGANAGGGVSARVKDXXXXXXXXXLHEIYPATRGAEEVVEAVLELRPGLSATCARAAAPGLRAP 682
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BLAST of mRNA_E-fasciculatus_F_contig14851.3457.1 vs. uniprot
Match: A0A6U1QK04_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QK04_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.370e-7
Identity = 49/162 (30.25%), Postives = 75/162 (46.30%), Query Frame = 1 
Query:  391 AGFRILRAARPRVHLCVGLQGNWLEDLDGTSSYVHHVRDSMVEGGGGGHERHEGKLPDWCRISFGESKDSFGWKKETTTVVVTTEMTEGEPEMAKMTIDGVGSMNEPIGPLRYTVQPG----RSGRERLRERLLRRLHQDFPQTQGRDEFVMLAEQPRTGLS 864
            AG  +L+ A PRV++CVGL G+ LE LD TS    H+                G    W  ISF  +KD F   +     V   E+  G+    +     + S     GP+ Y V       +  +E+++   LRRLH+ +P TQG++E V +++    GL+
Sbjct:   32 AGLSVLQEAEPRVYVCVGLCGSPLE-LDLTSCDYWHLPSPSAT------VEEAGAPSAWVHISFPCAKDPFWVDRHPGRAVAVVELPAGD--CVRRNPSRLSSATGAAGPVTYEVVRDAFMMKKAKEKIQAIALRRLHELYPLTQGKEEVVWVSDPQSQGLA 184
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14851.3457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K335_9PHAE6.080e-15179.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z712_9STRA1.690e-1837.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1QK04_9STRA3.370e-730.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14851contigE-fasciculatus_F_contig14851:9..3198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_004310.1
Exons4
Model size906
Cds size906
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14851.3457.1prot_E-fasciculatus_F_contig14851.3457.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14851 9..3198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927966.8452272-CDS-E-fasciculatus_F_contig14851:8..5061622927966.8452272-CDS-E-fasciculatus_F_contig14851:8..506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14851 9..506 +
1695995770.9231503-CDS-E-fasciculatus_F_contig14851:8..5061695995770.9231503-CDS-E-fasciculatus_F_contig14851:8..506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14851 9..506 +
1622927966.8593311-CDS-E-fasciculatus_F_contig14851:1060..12211622927966.8593311-CDS-E-fasciculatus_F_contig14851:1060..1221Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14851 1061..1221 +
1695995770.9313898-CDS-E-fasciculatus_F_contig14851:1060..12211695995770.9313898-CDS-E-fasciculatus_F_contig14851:1060..1221Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14851 1061..1221 +
1622927966.874083-CDS-E-fasciculatus_F_contig14851:1728..18821622927966.874083-CDS-E-fasciculatus_F_contig14851:1728..1882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14851 1729..1882 +
1695995770.9396787-CDS-E-fasciculatus_F_contig14851:1728..18821695995770.9396787-CDS-E-fasciculatus_F_contig14851:1728..1882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14851 1729..1882 +
1622927966.8858597-CDS-E-fasciculatus_F_contig14851:3105..31981622927966.8858597-CDS-E-fasciculatus_F_contig14851:3105..3198Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14851 3106..3198 +
1695995770.9502413-CDS-E-fasciculatus_F_contig14851:3105..31981695995770.9502413-CDS-E-fasciculatus_F_contig14851:3105..3198Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14851 3106..3198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14851.3457.1

>prot_E-fasciculatus_F_contig14851.3457.1 ID=prot_E-fasciculatus_F_contig14851.3457.1|Name=mRNA_E-fasciculatus_F_contig14851.3457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=302bp
RAIAEELVDSIHASGGRVLTRAKTTSVIVGDERAEGVTVVRESGGGGGGN
GSAAAAVNVMIAGDGLGSVISSIGVIDTFRGLLPRKSAPTTAASGSATAA
AGNGPAAGAGAAAGESVTALGEKDGEGLDPAGFRILRAARPRVHLCVGLQ
GNWLEDLDGTSSYVHHVRDSMVEGGGGGHERHEGKLPDWCRISFGESKDS
FGWKKETTTVVVTTEMTEGEPEMAKMTIDGVGSMNEPIGPLRYTVQPGRS
GRERLRERLLRRLHQDFPQTQGRDEFVMLAEQPRTGLSEGPERYLAKGVR
AP
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mRNA from alignment at E-fasciculatus_F_contig14851:9..3198+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14851.3457.1 ID=mRNA_E-fasciculatus_F_contig14851.3457.1|Name=mRNA_E-fasciculatus_F_contig14851.3457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3190bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14851:9..3198+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGCGATCGCGGAAGAGCTCGTGGACTCCATCCACGCCTCCGGGGGCCG
CGTCCTCACGCGCGCCAAGACGACCTCGGTCATCGTGGGGGACGAGAGGG
CGGAGGGCGTGACGGTAGTCCGAGAAAGCGGCGGGGGGGGTGGCGGCAAC
GGTTCGGCGGCGGCTGCTGTCAACGTCATGATCGCCGGAGACGGGCTGGG
GTCGGTCATCTCGTCGATCGGCGTTATTGACACGTTCCGTGGCCTGTTGC
CCCGCAAGTCGGCGCCGACGACGGCGGCCAGCGGTAGCGCGACCGCGGCG
GCGGGGAATGGGCCGGCGGCGGGGGCGGGGGCGGCGGCGGGCGAGAGCGT
GACGGCGCTGGGGGAGAAGGACGGGGAAGGGTTGGACCCGGCGGGGTTCC
GGATCCTGAGGGCGGCGAGGCCGCGGGTGCACCTGTGCGTGGGGCTGCAG
GGAAACTGGCTGGAGGACCTGGACGGGACTAGCTCTTACGTGCACCACGT
GAGTGGGTTGGCTTTGCTGCTGTTTGAGGATAATGGTTTTTGTGGAGAGA
GAGGGCGTGTCTGGTTGTTGCCGGCGGCAGCATCTGGCTGCACCGGTGGT
CGGGGAGAGAGGCAAGGGGCCAGCCACGCGATGGATGAGTAAAGCAAGCA
GGCGTAAAAGGCATTAGTTCATCAGACGCTAAACGCTCTCACCAAAACGT
ACCAATAGCTGGCATGTAGCGCCAATGCGTACGATACGCCGGAGTAAAAC
GCCGAAACACGACCGACCGTGCCTCATCTGCGAAAGTTGATCTTGATGCA
TAGTTTTTGTTGTTGTTGCCTTCATAGAGTACCACCAGCGTCGCCACGTC
AAACGATCAATAGACAAGCAAGCTGAAACAATCGACGCGAGCGTACTGTA
TCGCCACCGATGGACCCTGATCGATAGGCCAGCGACAAAAGAAAAACATC
CCTGACCAAAAACTAAGTAAGGCCTCCTACGCTGTACGAGCAACGGCGAC
AACCCACACGTTTCAGCCTAAAAACGTGGGCGTGGCCGTCTTGCTTCAAC
AGGTTCGCGACTCGATGGTGGAGGGTGGCGGCGGGGGGCACGAGCGCCAC
GAGGGGAAGCTGCCGGACTGGTGCCGGATAAGCTTCGGCGAGTCTAAGGA
CTCGTTTGGGTGGAAGAAGGAAACGACTACCGTGGTGGTGACGACAGAGA
TGACCGAAGGCGAGTGGGTCCGAGCGATCAAGCGCATGACCGACCGTGCG
GCCGGCGCGGAGAGAGTGGTGGCGCCTCCTCCAATCTCTCTGGGGGTTCA
TTGCGTTGTTGTTGTTGTTGGTGGTGGTGATGGTGGAGGTGGGCAGGTCG
GAGGTGCACACGTGTCTTGGTGCCGTCGCGGAAGTGCTACGCGAACGTGG
GAACCGGCATCGTGTCCCGATTTGATGTTGACACGAAAGCTGCGTGCACG
TCGTACGTATCGTTCGCGTGTTTCTTGCTTCCTTCTGATGGTAATTCTGC
TATCCTCTCTGTGCGCGTTATATCCATCATAAACGCCCTTGGTTTTTTTG
TTGCCCCTTGTAATATTAATATTTCGAGCGTCGCCCGTGGCATGTGGGCA
CACCTGGCTCGGGATGGTTTGGGACGGGCATTATAGTCATCATAAATGCC
TTTTTTTTGTAAAAGTATTTTTCCCCTTGCATATTTCGCGTGTTTGCGGC
GTCGACACGTTTGTGACGAGACCAGAGATGGCGAAGATGACGATCGACGG
TGTGGGGAGCATGAACGAGCCGATCGGGCCTCTCCGGTACACGGTCCAAC
CGGGACGATCCGGACGGGAGCGCCTACGAGAGCGACTGCTGCGGCGCCTG
CATCAAGACTTCCCGCAGACTCAGGTATGTGGGCGGGGTGCCTGGTGCGC
GCGGTGCGCGTGTTCGTAGTGTGTGTTTTTATTGTTGGCATTGACCGCGC
TAACGGGCTGACGAATGGAAAAACGTCAGTCTCAGTGCGGGTGGAAACAC
AAAACACTTGTAAATGCCTTCAATGAACTGGGACCCCGTGAGGGTGAGGG
CATGGGGGAGCCTCAGCGATCTGAGACCCTGTGCGAGGGCGTCGTGGGGA
AGGCTAAGCTGCTCTCTAGACTAAAAAGACAGAAGCTGTGTTTTCGTGGG
TCTTGAACTGTTTGCATCGGCAGCGCTGCTAACTGGGTAACCAACGAAAA
TTCATACCACCAGTCTCAGTGCAGCTGACAAACGGAAACGCTTCTCAAGG
CCACGGTCTGTGCGAGTGTGTTTATTTGTTTCGCGTCGACCGCGCTAGCC
GGCTGATCAGTGCAAGCATGTCAAGCACCAAGAGCTGGGTAAGTAGCGCG
TGCGTGTGCGCGGGGGTTGTACTCAGTAGAGAGGACTGCTGTGCCTGAAG
CGTCGTCGATGATGATATTTTTATATTTTTGGCCATCGAACAATCCTGGC
CCTTCTCTTTTGAAGCCATCGAATATGTCCGCAACAGCAGTCGTTTCGTC
TTGGCTCTGCTTGGGTGCGAGAAGGCCAACGGGGTAGACGTAGCAGAAAC
CACCCCTTGTGATGCGCCAGAGTGAGACAGCCTTCCCTTCTTCCCCAAGA
CTTTCCGCACACCGAGTCGATCCCCCCACGAGTAATCGCGCCCACCGCAA
GGAGACCACTTTCGTATCATACAATGCTTGGTGTTGTGGCTCCGCGTCGA
CACCCTTTTGGACTTTTCGTTTCTCCGACCGACCTTTACGACTGGTTGGT
CCAAAAGTGGTGGTATGTACGGTATGGTATGGTATGGTACGGTACCCGAA
CCCAACGGAGATTAACACAAACACTCGAGCTCCAAGAGTATATTGCATGA
CAACAGCATGATACCTCTCCCGGCCTTTTGTCCCGTGTTGTTGTCTCGCT
CCTCCCCCCCCCCCCCCTCTATGATGAAGTAGGAAGGAACGATTGGCCAT
CGATGATCAGTCCTCCGTCCTCTCGAGGGCGCGTGGTCAACGGTCTAACA
GCTGAGGCATGCATGGGCATCTCCCCTTCCCCTCACTCACTCACTCCCCC
CCTTCCCTCGTTCCCTCGCTCTCTCCCGATGTCCCTCCTACCGACAGGGT
CGCGACGAGTTCGTCATGCTCGCCGAGCAACCCAGAACCGGCCTCTCGGA
AGGTCCGGAGCGGTACCTGGCGAAGGGGGTGCGCGCGCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14851:9..3198+

>mRNA_E-fasciculatus_F_contig14851.3457.1 ID=mRNA_E-fasciculatus_F_contig14851.3457.1|Name=mRNA_E-fasciculatus_F_contig14851.3457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1812bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14851:9..3198+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGCGATCGCGGAAGAGCTCGTGGACTCCATCCACGCCTCCGGGGGCCG
CGTCCTCACGCGCGCCAAGACGACCTCGGTCATCGTGGGGGACGAGAGGG
CGGAGGGCGTGACGGTAGTCCGAGAAAGCGGCGGGGGGGGTGGCGGCAAC
GGTTCGGCGGCGGCTGCTGTCAACGTCATGATCGCCGGAGACGGGCTGGG
GTCGGTCATCTCGTCGATCGGCGTTATTGACACGTTCCGTGGCCTGTTGC
CCCGCAAGTCGGCGCCGACGACGGCGGCCAGCGGTAGCGCGACCGCGGCG
GCGGGGAATGGGCCGGCGGCGGGGGCGGGGGCGGCGGCGGGCGAGAGCGT
GACGGCGCTGGGGGAGAAGGACGGGGAAGGGTTGGACCCGGCGGGGTTCC
GGATCCTGAGGGCGGCGAGGCCGCGGGTGCACCTGTGCGTGGGGCTGCAG
GGAAACTGGCTGGAGGACCTGGACGGGACTAGCTCTTACGTGCACCACAG
GGCGATCGCGGAAGAGCTCGTGGACTCCATCCACGCCTCCGGGGGCCGCG
TCCTCACGCGCGCCAAGACGACCTCGGTCATCGTGGGGGACGAGAGGGCG
GAGGGCGTGACGGTAGTCCGAGAAAGCGGCGGGGGGGGTGGCGGCAACGG
TTCGGCGGCGGCTGCTGTCAACGTCATGATCGCCGGAGACGGGCTGGGGT
CGGTCATCTCGTCGATCGGCGTTATTGACACGTTCCGTGGCCTGTTGCCC
CGCAAGTCGGCGCCGACGACGGCGGCCAGCGGTAGCGCGACCGCGGCGGC
GGGGAATGGGCCGGCGGCGGGGGCGGGGGCGGCGGCGGGCGAGAGCGTGA
CGGCGCTGGGGGAGAAGGACGGGGAAGGGTTGGACCCGGCGGGGTTCCGG
ATCCTGAGGGCGGCGAGGCCGCGGGTGCACCTGTGCGTGGGGCTGCAGGG
AAACTGGCTGGAGGACCTGGACGGGACTAGCTCTTACGTGCACCACGTTC
GCGACTCGATGGTGGAGGGTGGCGGCGGGGGGCACGAGCGCCACGAGGGG
AAGCTGCCGGACTGGTGCCGGATAAGCTTCGGCGAGTCTAAGGACTCGTT
TGGGTGGAAGAAGGAAACGACTACCGTGGTGGTGACGACAGAGATGACCG
AAGGCGAGTTCGCGACTCGATGGTGGAGGGTGGCGGCGGGGGGCACGAGC
GCCACGAGGGGAAGCTGCCGGACTGGTGCCGGATAAGCTTCGGCGAGTCT
AAGGACTCGTTTGGGTGGAAGAAGGAAACGACTACCGTGGTGGTGACGAC
AGAGATGACCGAAGGCGAACCAGAGATGGCGAAGATGACGATCGACGGTG
TGGGGAGCATGAACGAGCCGATCGGGCCTCTCCGGTACACGGTCCAACCG
GGACGATCCGGACGGGAGCGCCTACGAGAGCGACTGCTGCGGCGCCTGCA
TCAAGACTTCCCGCAGACTCAGACCAGAGATGGCGAAGATGACGATCGAC
GGTGTGGGGAGCATGAACGAGCCGATCGGGCCTCTCCGGTACACGGTCCA
ACCGGGACGATCCGGACGGGAGCGCCTACGAGAGCGACTGCTGCGGCGCC
TGCATCAAGACTTCCCGCAGACTCAGGGTCGCGACGAGTTCGTCATGCTC
GCCGAGCAACCCAGAACCGGCCTCTCGGAAGGTCCGGAGCGGTACCTGGC
GAAGGGGGTGCGCGCGCCGGGTCGCGACGAGTTCGTCATGCTCGCCGAGC
AACCCAGAACCGGCCTCTCGGAAGGTCCGGAGCGGTACCTGGCGAAGGGG
GTGCGCGCGCCG
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