mRNA_E-fasciculatus_F_contig14850.3456.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14850.3456.1
Unique NamemRNA_E-fasciculatus_F_contig14850.3456.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14850.3456.1 vs. uniprot
Match: D7FZK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK7_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.520e-14
Identity = 81/104 (77.88%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:  196 PLTTPKRKKTDGGGXXXXXXXXXXXXXXXXXXXXXXXNKGLVPPQMSRPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXXGG--AKDLTFKQREK 501
            PLTTPKRKKTDG       XXXXXXX           NKGLVPPQMSRPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXX    AK+LTFKQREK
Sbjct:   65 PLTTPKRKKTDG-------XXXXXXXSKDSKGGAGSANKGLVPPQMSRPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXXXXXXAKELTFKQREK 161
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14850.3456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZK7_ECTSI2.520e-1477.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14850contigE-fasciculatus_F_contig14850:405..1770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010070.1
Exons2
Model size501
Cds size501
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927966.7828147-CDS-E-fasciculatus_F_contig14850:404..8031622927966.7828147-CDS-E-fasciculatus_F_contig14850:404..803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14850 405..803 -
1695995770.904656-CDS-E-fasciculatus_F_contig14850:404..8031695995770.904656-CDS-E-fasciculatus_F_contig14850:404..803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14850 405..803 -
1622927966.7949908-CDS-E-fasciculatus_F_contig14850:1668..17701622927966.7949908-CDS-E-fasciculatus_F_contig14850:1668..1770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14850 1669..1770 -
1695995770.9128346-CDS-E-fasciculatus_F_contig14850:1668..17701695995770.9128346-CDS-E-fasciculatus_F_contig14850:1668..1770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14850 1669..1770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14850.3456.1prot_E-fasciculatus_F_contig14850.3456.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14850 405..1770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14850.3456.1

>prot_E-fasciculatus_F_contig14850.3456.1 ID=prot_E-fasciculatus_F_contig14850.3456.1|Name=mRNA_E-fasciculatus_F_contig14850.3456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=167bp
MALSLVGDYGGSGSSSEEESEEEPEEEQKPKKPQVSLPSAADLFDSVDTS
SASFLSAPAASAADAPLTTPKRKKTDGGGDSGGRSDKKSKDSKGGAGSAG
SANKGLVPPQMSRPNIVTEDSALWSSDASRKRQRQGEAERRGAAAATAGG
KGKGGGAKDLTFKQREK
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mRNA from alignment at E-fasciculatus_F_contig14850:405..1770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14850.3456.1 ID=mRNA_E-fasciculatus_F_contig14850.3456.1|Name=mRNA_E-fasciculatus_F_contig14850.3456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14850:405..1770- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTCTGTCACTTGTGGGAGACTATGGGGGTTCGGGTTCTTCTTCCGA
GGAGGAGTCAGAGGAGGAGCCAGAGGAGGAGCAAAAGCCGAAGAAACCTC
AGGTATTGCTTGCATATTGTAATAACCCCCCCGTGTCTGCTGTGTCGTTT
TAGAGTCAAGCGAGGATAGATCTGGCACTCCTGCCCTCCCTGGCAGGTTC
CAACAGGCTTGAGCTACAGCTCTCGTGCGCCCTCCCCCCCCCCCCCCNNN
NNNNNNNATCCACTCGTGCTCCTGGGTTCAAGTACGTTTGAGTACCGCAT
TGCTGGCAGTCGGGCGCATTGTCTACGATACCGGGTGGAAAAACGCCAGT
CCAAGTCTCATCACTGCAGCAGTCGGAAAAGCGGTTACATCTGTTGCAGC
AATTTTGATCATACTCATAACCGTGGTACTACGTACGGTAATCGCTTGAC
GATCCTGATGGAAGACCAGGCAAGGATCTGCAGTTGATGTACACATGGTT
GTCTCTTCGTGGGAGTTGTTGGTTGTTACCTCGTTCTCGAGAGTGGCACA
GGTGGTACGTTGTATACCACCCCCCCCCCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTCGCCGACGAATAGAGTGTACCCCCTGATTT
CCCCGAATTAGCACTGGCCCCGGGTTCGGATTCTTGAAGAACGCATCACT
CGTCATTCTCGTCCCCACGCGTTTTGAAATCAACAATCTGTGTCCACCTC
CCTCCTCCAATCAGCCCATGGTGTATCTGGTTTTGGCACAGCTAACCCAA
GGATATTGGCCAGCTTCCGTTTTCTTATGAAACGTAGCCTGGGCCTGCGA
AACCCGGCATATCGCTCCGTCCTGGCGTTGCAGGGATGCGAATTCAATGG
TCTAGCGGCTACAGCATGCCTTTACATCAGCACACACACACACACACACA
CACACACACTCTCGCAGGTCTCCCTCCCGTCAGCCGCGGATCTGTTCGAC
AGCGTAGACACGAGCTCCGCCTCCTTCCTCTCCGCCCCGGCGGCATCAGC
AGCAGACGCCCCGCTCACAACACCCAAACGCAAGAAAACAGATGGCGGCG
GGGACAGCGGCGGCAGGAGCGATAAAAAGAGCAAGGACTCGAAGGGGGGC
GCGGGGAGCGCGGGGAGCGCGAACAAGGGCCTGGTTCCCCCGCAGATGTC
TCGGCCGAACATCGTCACGGAGGACTCTGCCTTGTGGTCCTCGGACGCCT
CGAGGAAGCGGCAACGGCAGGGCGAGGCGGAGAGGAGAGGGGCCGCCGCC
GCGACTGCGGGGGGTAAGGGGAAAGGCGGGGGCGCGAAAGACCTGACGTT
CAAGCAGAGAGAGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14850:405..1770-

>mRNA_E-fasciculatus_F_contig14850.3456.1 ID=mRNA_E-fasciculatus_F_contig14850.3456.1|Name=mRNA_E-fasciculatus_F_contig14850.3456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14850:405..1770- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTCTGTCACTTGTGGGAGACTATGGGGGTTCGGGTTCTTCTTCCGA
GGAGGAGTCAGAGGAGGAGCCAGAGGAGGAGCAAAAGCCGAAGAAACCTC
AGATGGCTCTGTCACTTGTGGGAGACTATGGGGGTTCGGGTTCTTCTTCC
GAGGAGGAGTCAGAGGAGGAGCCAGAGGAGGAGCAAAAGCCGAAGAAACC
TCAGGTCTCCCTCCCGTCAGCCGCGGATCTGTTCGACAGCGTAGACACGA
GCTCCGCCTCCTTCCTCTCCGCCCCGGCGGCATCAGCAGCAGACGCCCCG
CTCACAACACCCAAACGCAAGAAAACAGATGGCGGCGGGGACAGCGGCGG
CAGGAGCGATAAAAAGAGCAAGGACTCGAAGGGGGGCGCGGGGAGCGCGG
GGAGCGCGAACAAGGGCCTGGTTCCCCCGCAGATGTCTCGGCCGAACATC
GTCACGGAGGACTCTGCCTTGTGGTCCTCGGACGCCTCGAGGAAGCGGCA
ACGGCAGGGCGAGGCGGAGAGGAGAGGGGCCGCCGCCGCGACTGCGGGGG
GTAAGGGGAAAGGCGGGGGCGCGAAAGACCTGACGTTCAAGCAGAGAGAG
AAGGTCTCCCTCCCGTCAGCCGCGGATCTGTTCGACAGCGTAGACACGAG
CTCCGCCTCCTTCCTCTCCGCCCCGGCGGCATCAGCAGCAGACGCCCCGC
TCACAACACCCAAACGCAAGAAAACAGATGGCGGCGGGGACAGCGGCGGC
AGGAGCGATAAAAAGAGCAAGGACTCGAAGGGGGGCGCGGGGAGCGCGGG
GAGCGCGAACAAGGGCCTGGTTCCCCCGCAGATGTCTCGGCCGAACATCG
TCACGGAGGACTCTGCCTTGTGGTCCTCGGACGCCTCGAGGAAGCGGCAA
CGGCAGGGCGAGGCGGAGAGGAGAGGGGCCGCCGCCGCGACTGCGGGGGG
TAAGGGGAAAGGCGGGGGCGCGAAAGACCTGACGTTCAAGCAGAGAGAGA
AG
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