mRNA_E-fasciculatus_F_contig1484.3451.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI) HSP 1 Score: 532 bits (1371), Expect = 8.490e-172 Identity = 279/286 (97.55%), Postives = 281/286 (98.25%), Query Frame = 1
Query: 1 SSGASGMSLSGVSGTQGSSTAHFSQAQNASVREDREKALEVDLSKLKKHRGAKDAQGLEEVVSGYRKQMQELQGQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYSLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA 858
SSGASGMSL GTQGSSTAHFSQAQNASV+EDREKALEVDLSKLKKHRGAKDAQGLEEVVSGYRKQMQELQ QINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAY+LVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA
Sbjct: 1010 SSGASGMSLXXXXGTQGSSTAHFSQAQNASVKEDREKALEVDLSKLKKHRGAKDAQGLEEVVSGYRKQMQELQAQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYNLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA 1295
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Match: A0A6H5L4W0_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W0_9PHAE) HSP 1 Score: 355 bits (912), Expect = 3.930e-117 Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 1
Query: 205 MQELQGQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYSLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLK 753
MQELQ QINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQ RYDTFMQAY+LVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLK
Sbjct: 1 MQELQAQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQLRYDTFMQAYNLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLK 183
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Match: A0A7S3YCQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCQ0_HETAK) HSP 1 Score: 330 bits (845), Expect = 1.480e-104 Identity = 158/243 (65.02%), Postives = 200/243 (82.30%), Query Frame = 1
Query: 112 ALEVDLSKLKKHRGAKDAQGLEEVVSGYRKQMQELQGQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYSLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 840
+L +D S+LK HR K + LEE++ Y ++M +Q + +M PNM+A E+F +++DRLK SG+ F +K NA + L FN++K++R+ FMQ ++ + D LN+ Y+DLT+SSKHPLGG A+L+LD+PEEPYL GVKFNAMPPMKRFRDMEQLSGGE+TVA+L LLF++HSFRPAPFFVMDEIDAALDNINVKKVCNYI+ RSGD QSIVISLKDMFYE+AD+LVG+CRD AT SR+LTLDL
Sbjct: 112 SLMIDFSRLKNHRNIKSNEHLEEILQKYVEEMSAIQAECEKMQPNMKAFEKFDNLTDRLKDSGKDFSNAKDNAQASALAFNKIKEKRHTAFMQCFNHIKDTLNSTYRDLTKSSKHPLGGTAYLTLDDPEEPYLAGVKFNAMPPMKRFRDMEQLSGGERTVASLALLFSVHSFRPAPFFVMDEIDAALDNINVKKVCNYIKRRSGDCQSIVISLKDMFYERADSLVGVCRDRATMGSRSLTLDL 354
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Match: A0A7S2AZM0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZM0_9STRA) HSP 1 Score: 309 bits (791), Expect = 3.930e-97 Identity = 151/218 (69.27%), Postives = 180/218 (82.57%), Query Frame = 1
Query: 205 MQELQGQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYSLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA 858
+ +L +I M PNM+A ERF DV+ RLK+S +E SK A A FNEVK +R++ F + +S L TIY+DLT+SSKHPLGGNA+LSLD+ EEPY GG+K+N MPPMKRFRDM+QLSGGEKTVAAL LLFAIHS+RPAPFFVMDE+DAALDN+NVKKVCNYI+ RSGDFQ IVISLKDMFYE+AD+LVGICRD +TNSSRTLTLDLE+ G++
Sbjct: 97 LNDLSNEIEGMQPNMKAFERFDDVTTRLKSSLAEYEISKDEARDAAASFNEVKSKRHELFTACFEHISKELKTIYRDLTKSSKHPLGGNAYLSLDDTEEPYAGGIKYNTMPPMKRFRDMDQLSGGEKTVAALALLFAIHSYRPAPFFVMDEVDAALDNVNVKKVCNYIKQRSGDFQCIVISLKDMFYEQADSLVGICRDVSTNSSRTLTLDLESFGDS 314
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Match: A0A7S2SBG7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SBG7_9STRA) HSP 1 Score: 298 bits (762), Expect = 5.780e-93 Identity = 159/260 (61.15%), Postives = 195/260 (75.00%), Query Frame = 1
Query: 64 HFSQAQNASVREDREKALEVDLSKLKKHRGAKDAQGLEEVV-SGYRKQMQELQGQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYSLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 840
HFSQ ++ V +D+ A VD SKL K + E+ V + Q+ +L QI + PNM+A E + +V++RLK S FE++K NA +F +++ +R F A+S + L TIY D+T+SSKHPLGG AFLSLD+ EEPY GG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDEIDAALDN+NV KVCNYI+ RSGDFQ IVISLKDMFYE++++L+GICRD ATNSS+TLTLDL
Sbjct: 8 HFSQPNDSRVVKDKRDAGRVDFSKLNSDLKQKLSDREEKRVRKDFEDQLVKLLTQIENINPNMKAGEAYDNVTERLKESVTDFEEAKVNARKKTAQFQKIRNQRSKRFNDAFSHIDQALKTIYTDMTKSSKHPLGGKAFLSLDDSEEPYRGGMKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIHSFRPAPFFVMDEIDAALDNVNVLKVCNYIRQRSGDFQCIVISLKDMFYERSNSLIGICRDVATNSSKTLTLDL 267
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Match: K8Z3L9_NANGC (Regulator of chromosome condensation-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3L9_NANGC) HSP 1 Score: 299 bits (766), Expect = 3.460e-90 Identity = 149/242 (61.57%), Postives = 192/242 (79.34%), Query Frame = 1
Query: 121 VDLSKL-KKHRGAKDAQGLEEVVSGYRKQMQELQGQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYSLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLE 843
+D S L KK + AK LE Y ++ +LQG++ +M PNMRA+E++ ++S R+K +G +E +K+ A + ++ ++Q RY+ FM + VSD L +IYKDLT+SSKHPLGG A+LSLD+ +EPYLGGV +NAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHS+RPAPFFV+DE+DAALDN+NV+KVC+YI+ RSG+FQ +VISLKDMFYE A ALVG+CRD A+N SRTLTLDL+
Sbjct: 296 IDFSSLPKKEKVAKARDELETTRKRYHDRIADLQGEVEKMQPNMRALEKYEEMSRRVKEAGDEYEAAKKAAQESNALYSHLRQDRYEKFMDCFGHVSDALTSIYKDLTKSSKHPLGGQAYLSLDDSDEPYLGGVAYNAMPPMKRFRDMEQLSGGEKTVAALALLFAIHSYRPAPFFVLDEVDAALDNVNVRKVCHYIKQRSGEFQCLVISLKDMFYENATALVGVCRDKASNGSRTLTLDLD 537
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Match: A0A4D9CMM9_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMM9_9STRA) HSP 1 Score: 312 bits (800), Expect = 1.330e-89 Identity = 158/266 (59.40%), Postives = 209/266 (78.57%), Query Frame = 1
Query: 49 GSSTAHFSQAQNASVREDREKALEVDLSKL-KKHRGAKDAQGLEEVVSGYRKQMQELQGQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYSLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLE 843
G ++ H SQ+Q +R+DR++ ++D S L KK + AK LE Y ++ ELQG++ +M PNMRA+E++ ++S R+K +G +E +K+ A + ++ ++Q RY+ FM + VSD L +IYKDLT+SSKHPLGG A+LSLD+ +EPYLGGV +NAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHS+RPAPFFV+DE+DAALDN+NV+KVC+YI+ RSG+FQ +VISLKDMFYE A+ALVG+CRD A+N SRTLTLDL+
Sbjct: 1004 GEASTHPSQSQAPRIRKDRKELDKIDFSSLPKKEKVAKARDELETTRKRYHDRIAELQGEVEKMQPNMRALEKYEEMSRRVKEAGDEYEAAKKAAQESNALYSHLRQDRYEKFMDCFGHVSDALTSIYKDLTKSSKHPLGGQAYLSLDDSDEPYLGGVAYNAMPPMKRFRDMEQLSGGEKTVAALALLFAIHSYRPAPFFVLDEVDAALDNVNVRKVCHYIKQRSGEFQCLVISLKDMFYENANALVGVCRDKASNGSRTLTLDLD 1269
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Match: A0A7S2RI11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI11_9STRA) HSP 1 Score: 307 bits (787), Expect = 2.750e-89 Identity = 160/262 (61.07%), Postives = 198/262 (75.57%), Query Frame = 1
Query: 55 STAHFSQAQNASVREDREKALEVDLSKLKKHRGAKDAQGLEEVVSGYRKQMQELQGQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYSLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 840
S+A SQ ++ D + A +D S+L +H+ A D + V S + ++ L I M PNM+A ERF DVS R KAS + F+Q++++A A FN+VKQ+R+D FM ++ V+ L TIY+DLT+ HPLGGNA+LSLD+ EEP+LGG+K+NAMPP+KRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDE+DAALDN+NV KVCNYI+ RS DFQ IVISLKDMFY AD+LVGICRD T+SSRTLTLDL
Sbjct: 732 SSASNSQLESQQALLDSQTAHRIDFSQLTRHKDAMDDKQRAAVTSEFEAEIAVLDTAIASMQPNMKATERFEDVSVRHKASTEEFDQARESARDAASLFNDVKQKRHDAFMACFNHVAHELQTIYQDLTKDPNHPLGGNAYLSLDDSEEPFLGGIKYNAMPPLKRFRDMEQLSGGEKTVAALALLFAIHSFRPAPFFVMDEVDAALDNVNVSKVCNYIRHRSQDFQCIVISLKDMFYAHADSLVGICRDVGTDSSRTLTLDL 993
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Match: A0A6T7JRG2_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JRG2_9STRA) HSP 1 Score: 311 bits (796), Expect = 5.410e-89 Identity = 168/271 (61.99%), Postives = 206/271 (76.01%), Query Frame = 1
Query: 43 TQGSS-TAHFSQAQNASVREDREKALEVDLS----KLKKHRGAKDAQGLEEVVSGYRKQMQELQGQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYSLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 840
TQG++ + HFSQA +A V +DR A +VD S KLK+ ++ + ++ + +++ +L I M PNM+A + F ++DRLK S F+++K A A F VKQ+R D F A+SL+ + L TIY D+T+SSKHPLGGNA+LSLD+ EEPYLGG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDEIDAALDN+NV KVCNYI+ RSGDFQ IVISLKDMFYE++ +LVGICRD TNSSRTLTLDL
Sbjct: 1006 TQGTTISTHFSQADDARVAKDRRHADKVDFSQMDEKLKQRLSDREEK---KIRKDFEEKLTKLAAHIEGMAPNMKAKDAFESITDRLKESSVEFDEAKVAARKATSTFQSVKQQRTDRFNGAFSLIDEALKTIYTDMTKSSKHPLGGNAYLSLDDTEEPYLGGMKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIHSFRPAPFFVMDEIDAALDNVNVLKVCNYIRQRSGDFQCIVISLKDMFYERSQSLVGICRDVGTNSSRTLTLDL 1273
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Match: K0R031_THAOC (SMC_N domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R031_THAOC) HSP 1 Score: 293 bits (750), Expect = 5.000e-88 Identity = 147/260 (56.54%), Postives = 196/260 (75.38%), Query Frame = 1
Query: 64 HFSQAQNASVREDREKALEVDLSKLKKHRGAKDAQGLEEVVSG-YRKQMQELQGQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFNEVKQRRYDTFMQAYSLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 840
HFSQ ++ +R DR++A VD S + + + +Q EE + + ++ +L +I + PNM+A + F ++++++K+ F+ +K+ A KFN+V++ R F A+ + L IY D+T+SSKHPLGGNA+LSLD+ +EPYL G+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFF+MDE+DAALDN+NV KVCNYIQ RS DFQ IVISLKDMFYE++++LVGICRD ++NSSRT+TLDL
Sbjct: 249 HFSQRESNKIRLDRKEASRVDFSNMDEDLKTRRSQAEEEKLQKKFESKISKLNQEIEGIAPNMKAADAFNEITEKVKSGMDEFDTAKETGRNATDKFNKVRKARASKFNTAFKKIDAALKVIYTDMTKSSKHPLGGNAYLSLDDTDEPYLSGMKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIHSFRPAPFFIMDEVDAALDNVNVLKVCNYIQQRSSDFQCIVISLKDMFYERSESLVGICRDVSSNSSRTMTLDL 508 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1484.3451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1484.3451.1 >prot_E-fasciculatus_F_contig1484.3451.1 ID=prot_E-fasciculatus_F_contig1484.3451.1|Name=mRNA_E-fasciculatus_F_contig1484.3451.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=281bp MSLSGVSGTQGSSTAHFSQAQNASVREDREKALEVDLSKLKKHRGAKDAQback to top mRNA from alignment at E-fasciculatus_F_contig1484:1958..7621- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1484.3451.1 ID=mRNA_E-fasciculatus_F_contig1484.3451.1|Name=mRNA_E-fasciculatus_F_contig1484.3451.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5664bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1484:1958..7621- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1484:1958..7621- >mRNA_E-fasciculatus_F_contig1484.3451.1 ID=mRNA_E-fasciculatus_F_contig1484.3451.1|Name=mRNA_E-fasciculatus_F_contig1484.3451.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1686bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1484:1958..7621- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |