mRNA_E-fasciculatus_F_contig14836.3449.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14836.3449.1
Unique NamemRNA_E-fasciculatus_F_contig14836.3449.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14836.3449.1 vs. uniprot
Match: D7FL72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL72_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 2.010e-95
Identity = 143/149 (95.97%), Postives = 144/149 (96.64%), Query Frame = 1 
Query:    1 MAGDSGSDGVVNMSSFDAASAP-SGPGAGVIDLQFENLKAGGFKVFLLFFLLGQGRAKDNDTPFSVRDTEEGIRVLIGDETKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQSVEDHQKLFMVR 444
            MA DSGSDGVVNMSSFDA SAP SGPGAGVIDLQF+NLK GGFKVFLLFFLLGQGRAKDNDTPFSVRDTEEGIRVLIGDETKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQSVEDHQKLFM R
Sbjct:    1 MAEDSGSDGVVNMSSFDAQSAPPSGPGAGVIDLQFQNLKTGGFKVFLLFFLLGQGRAKDNDTPFSVRDTEEGIRVLIGDETKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQSVEDHQKLFMFR 149
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BLAST of mRNA_E-fasciculatus_F_contig14836.3449.1 vs. uniprot
Match: A0A835Z0B5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0B5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.350e-29
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 1 
Query:   73 PGAGVIDLQFENLKAGGFKVFLLFFLLGQGRAKDNDTPFSVRDTEEGIRVLIGDETKNDS--QWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQSVEDHQKLF 435
            PG  V+DL+F  LK GGFKV+L F+LL +G+  D    F+VR+T +GIR  +  E    S  ++ GVLD+SWG +P PFFRVDRID NE  PYPGEL +L +++DA+ ++  +       KLF
Sbjct:   96 PGERVLDLRFATLKKGGFKVWLFFWLLAEGKG-DPKNQFTVRETADGIRCFLTGEQSGASVKEYNGVLDISWGTDPAPFFRVDRIDPNEEEPYPGELEVLCRIVDAMAELVQDDVTAGADKLF 217
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BLAST of mRNA_E-fasciculatus_F_contig14836.3449.1 vs. uniprot
Match: A0A7S3YKT4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKT4_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 7.120e-8
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  118 GGFKVFLLFFLLGQGRAKDNDTPFSVRDTEEG-----IRVLIGDETKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQSVEDHQKLF 435
            GG KV++  + L  G+  D   PF V D  E      +R++I   ++ND    GVLD+++        RV R + +   PYPGELY +  LL+A++++   + V++  +LF
Sbjct:    1 GGLKVWMSLYFLSAGKRSDLQYPFQVTDISEAKGCPALRLVI---SENDDPI-GVLDVTFSENG---IRVTRYEDSRTTPYPGELYAMYYLLEAMLELKSSKDVKEGGQLF 104
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14836.3449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FL72_ECTSI2.010e-9595.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0B5_9STRA1.350e-2947.97Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3YKT4_HETAK7.120e-832.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14836contigE-fasciculatus_F_contig14836:896..2818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_005260.1
Exons3
Model size462
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14836.3449.1prot_E-fasciculatus_F_contig14836.3449.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14836 896..2818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927965.5119205-CDS-E-fasciculatus_F_contig14836:895..10511622927965.5119205-CDS-E-fasciculatus_F_contig14836:895..1051Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14836 896..1051 +
1695995770.4148529-CDS-E-fasciculatus_F_contig14836:895..10511695995770.4148529-CDS-E-fasciculatus_F_contig14836:895..1051Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14836 896..1051 +
1622927965.5285025-CDS-E-fasciculatus_F_contig14836:2022..22001622927965.5285025-CDS-E-fasciculatus_F_contig14836:2022..2200Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14836 2023..2200 +
1695995770.427482-CDS-E-fasciculatus_F_contig14836:2022..22001695995770.427482-CDS-E-fasciculatus_F_contig14836:2022..2200Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14836 2023..2200 +
1622927965.5440042-CDS-E-fasciculatus_F_contig14836:2690..28181622927965.5440042-CDS-E-fasciculatus_F_contig14836:2690..2818Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14836 2691..2818 +
1695995770.4366271-CDS-E-fasciculatus_F_contig14836:2690..28181695995770.4366271-CDS-E-fasciculatus_F_contig14836:2690..2818Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14836 2691..2818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14836.3449.1

>prot_E-fasciculatus_F_contig14836.3449.1 ID=prot_E-fasciculatus_F_contig14836.3449.1|Name=mRNA_E-fasciculatus_F_contig14836.3449.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=154bp
MAGDSGSDGVVNMSSFDAASAPSGPGAGVIDLQFENLKAGGFKVFLLFFL
LGQGRAKDNDTPFSVRDTEEGIRVLIGDETKNDSQWEGVLDLSWGVEPRP
FFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQSVEDHQKLFMVRIV
FSV*
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mRNA from alignment at E-fasciculatus_F_contig14836:896..2818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14836.3449.1 ID=mRNA_E-fasciculatus_F_contig14836.3449.1|Name=mRNA_E-fasciculatus_F_contig14836.3449.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1923bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14836:896..2818+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGGCGACAGCGGCAGCGACGGCGTCGTGAACATGTCCAGCTTCGA
TGCAGCGAGCGCCCCGTCAGGCCCCGGTGCCGGCGTGATAGACTTGCAGT
TCGAGAACCTCAAGGCCGGAGGCTTCAAGGTCTTCCTGCTGTTCTTCTTG
CTTGGTGTGAGTATGTCTTTGCCGCACATGTAGACTAAGTAGAGGTTGCT
GTTGACCATCGTCGCCACAGGCAGCATGGTGTGTATGTCATTCTCTGAGG
CAGCAGCAGCACCACAACACGTGTTACGACACCTGCAAAGGTGTGTGTTT
CTTCAATCAGCGTCGACGCGCTAAGACGCTGACCAATTGCAAGGCGTGTG
TGATGGCGTGTGCTGTCCCGCCTGCGTGTTGCAGGCCGTAATCTTGCTGC
TGTTGGCTGTGGTCCCAAAGCCCCGTTTGCGTTGCAAGTGTTCCAAAAAA
AAAAATGATGAATCACTCCGCAGTTCGCGTCTTCTGGAGCTTATTTTGTA
TGCATATAGACGTTGGGATCGTGCATCTTCCCAAGAGCTTACGAGCCCCA
CGCGCTCACTCAGGCTTTCTTCTAACTGACTACGCGATAGCGATATACAG
CCGAAAAAGTGAAATGCCTCAAACTGACTACGCGATAGCGATATACAGCC
GAAAAAGTGAAATGCCTAGTCTGTATTAAACTCTTGGAGACGGGGGTGTT
CCGTGTCGGCCCCTCGCGTGTAAATGCAGTGTTGTTGTGGTTGTTGCCAA
CACCTACAGCAGGACTCTGACGATGAACCTTGACATGTGATACAGAATGG
ACACCCGGCCTGCATCCAGTATTATCCTGAGTCCAGTATCCTGTGTCCAG
TCCACCGTCGTACGCTCCGACGTGTAGAAACGTTAACGTTGACCTCAAAC
ATATGTCACTAGGCTTGGCCTTTAGTTGTCCACGTTTCCCCCGGAGTCAG
CCGCCACGTAGCATGTGTTGAAGCTCACATGAACACTCATCTATGCCCCG
AAGTGCCCTAATACGCTTTTGACATTCTCGTGGACCAAAGCGTGTGCTTC
ATCGCTGAAACCTGCGTTCTCTTCTTTTCCCCTGTGGTTTCATTTTTTTC
TGGGACTAACCTCCATCCCCGTCTCAGCAAGGACGGGCGAAGGACAACGA
CACCCCCTTCAGCGTCAGGGACACAGAAGAGGGCATCCGAGTGCTCATAG
GAGACGAGACCAAGAACGACTCTCAGTGGGAAGGGGTGCTGGACCTGTCC
TGGGGAGTGGAGCCTCGACCGTTCTTCCGGGTGGACAGAATCGACGTAAA
CGAAGGTGTGACGCTGGCGCATCGGTATCATTGAGTGCTTGACTTTACGG
CCAGTGTAGGCTAGAGTGCCGTGGCGATGTTGGTCTGACAGTGACCGCGG
TGATTAACATGGATGCTTCGTTGGTTGACGTGGTTGGCGACGGAACTGGT
GCAAAGCGGCCGCCCTTCGTCGGCGACGCCAGTCAGTGCCGAAGCCACTC
ACGTGAGGTGGTCTCTGCGGAGTGGTACACACGATGGTCGAAATTCCTAG
AACATTGGGGACACCGCCCTGGAATGAAATCATCGGTCGACCGGGGATTC
TTCGTCAAAGGAAATTCCGTTCCAAAAATATTGACCAATCAGAAATTTGC
GGGCACCTCTTTGAGCGAGTATCTACATGTATCGATGCTATTGAGCTATG
TGTGTATTTTACCTCATCATGGGTCTCAGGGAATTCATTATTTTCGTCGC
CGCCCCTTGGTTGTTCCTCTCTCGACAACAACGACACACAATCAGTCATA
CCGTACCCCGGAGAGCTTTACATCCTCAACAAACTGCTCGACGCTATCAT
CGACGTGAACGGAGAGCAGTCAGTGGAGGACCACCAGAAGCTCTTCATGG
TGAGGATTGTATTTAGTGTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14836:896..2818+

>mRNA_E-fasciculatus_F_contig14836.3449.1 ID=mRNA_E-fasciculatus_F_contig14836.3449.1|Name=mRNA_E-fasciculatus_F_contig14836.3449.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14836:896..2818+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGGCGACAGCGGCAGCGACGGCGTCGTGAACATGTCCAGCTTCGA
TGCAGCGAGCGCCCCGTCAGGCCCCGGTGCCGGCGTGATAGACTTGCAGT
TCGAGAACCTCAAGGCCGGAGGCTTCAAGGTCTTCCTGCTGTTCTTCTTG
CTTGGTATGGCGGGCGACAGCGGCAGCGACGGCGTCGTGAACATGTCCAG
CTTCGATGCAGCGAGCGCCCCGTCAGGCCCCGGTGCCGGCGTGATAGACT
TGCAGTTCGAGAACCTCAAGGCCGGAGGCTTCAAGGTCTTCCTGCTGTTC
TTCTTGCTTGGTCAAGGACGGGCGAAGGACAACGACACCCCCTTCAGCGT
CAGGGACACAGAAGAGGGCATCCGAGTGCTCATAGGAGACGAGACCAAGA
ACGACTCTCAGTGGGAAGGGGTGCTGGACCTGTCCTGGGGAGTGGAGCCT
CGACCGTTCTTCCGGGTGGACAGAATCGACGTAAACGAAGCAAGGACGGG
CGAAGGACAACGACACCCCCTTCAGCGTCAGGGACACAGAAGAGGGCATC
CGAGTGCTCATAGGAGACGAGACCAAGAACGACTCTCAGTGGGAAGGGGT
GCTGGACCTGTCCTGGGGAGTGGAGCCTCGACCGTTCTTCCGGGTGGACA
GAATCGACGTAAACGAAGTCATACCGTACCCCGGAGAGCTTTACATCCTC
AACAAACTGCTCGACGCTATCATCGACGTGAACGGAGAGCAGTCAGTGGA
GGACCACCAGAAGCTCTTCATGGTGAGGATTGTATTTAGTGTGTAGTCAT
ACCGTACCCCGGAGAGCTTTACATCCTCAACAAACTGCTCGACGCTATCA
TCGACGTGAACGGAGAGCAGTCAGTGGAGGACCACCAGAAGCTCTTCATG
GTGAGGATTGTATTTAGTGTGTAG
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