mRNA_E-fasciculatus_F_contig14834.3448.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14834.3448.1
Unique NamemRNA_E-fasciculatus_F_contig14834.3448.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14834.3448.1 vs. uniprot
Match: D7G8I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I0_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 8.990e-17
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QSSTMFGGVSGAAVDGQLSRFFSDGSTTMTSLEAQPWWQV 120
            QSSTMFGGVSGAAVDGQLSRFFSDGSTTMTSLE QPWWQV
Sbjct: 1613 QSSTMFGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQV 1652
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BLAST of mRNA_E-fasciculatus_F_contig14834.3448.1 vs. uniprot
Match: A0A6H5L8H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.130e-16
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QSSTMFGGVSGAAVDGQLSRFFSDGSTTMTSLEAQPWWQV 120
            QSST+FGGVSGAAVDGQLSRFFSDGSTTMTSLE QPWWQV
Sbjct:  900 QSSTIFGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQV 939
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14834.3448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8I0_ECTSI8.990e-1797.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8H6_9PHAE3.130e-1695.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14834contigE-fasciculatus_F_contig14834:1987..2106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue7.5e-12
Seed eggNOG ortholog2880.D7G8I0
EggNOG OGs2CN6T@1,2QU8Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size108
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927965.4311736-UTR-E-fasciculatus_F_contig14834:1986..19981622927965.4311736-UTR-E-fasciculatus_F_contig14834:1986..1998Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14834 1987..1998 +
1695995770.380043-UTR-E-fasciculatus_F_contig14834:1986..19981695995770.380043-UTR-E-fasciculatus_F_contig14834:1986..1998Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14834 1987..1998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927965.4631956-CDS-E-fasciculatus_F_contig14834:1998..21061622927965.4631956-CDS-E-fasciculatus_F_contig14834:1998..2106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14834 1999..2106 +
1695995770.3975286-CDS-E-fasciculatus_F_contig14834:1998..21061695995770.3975286-CDS-E-fasciculatus_F_contig14834:1998..2106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14834 1999..2106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14834.3448.1prot_E-fasciculatus_F_contig14834.3448.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14834 1999..2106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14834.3448.1

>prot_E-fasciculatus_F_contig14834.3448.1 ID=prot_E-fasciculatus_F_contig14834.3448.1|Name=mRNA_E-fasciculatus_F_contig14834.3448.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=36bp
MFGGVSGAAVDGQLSRFFSDGSTTMTSLEAQPWWQV
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mRNA from alignment at E-fasciculatus_F_contig14834:1987..2106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14834.3448.1 ID=mRNA_E-fasciculatus_F_contig14834.3448.1|Name=mRNA_E-fasciculatus_F_contig14834.3448.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=120bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14834:1987..2106+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGCTCCACCATGTTCGGAGGCGTGTCGGGGGCAGCAGTTGACGGCCA
GCTTAGCCGATTTTTCTCCGACGGGTCCACCACGATGACTTCCCTCGAGG
CGCAGCCGTGGTGGCAAGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14834:1987..2106+

>mRNA_E-fasciculatus_F_contig14834.3448.1 ID=mRNA_E-fasciculatus_F_contig14834.3448.1|Name=mRNA_E-fasciculatus_F_contig14834.3448.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14834:1987..2106+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGGAGGCGTGTCGGGGGCAGCAGTTGACGGCCAGCTTAGCCGATT
TTTCTCCGACGGGTCCACCACGATGACTTCCCTCGAGGCGCAGCCGTGGT
GGCAAGTAATGTTCGGAGGCGTGTCGGGGGCAGCAGTTGACGGCCAGCTT
AGCCGATTTTTCTCCGACGGGTCCACCACGATGACTTCCCTCGAGGCGCA
GCCGTGGTGGCAAGTA
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