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Homology
BLAST of mRNA_E-fasciculatus_F_contig1483.3445.1 vs. uniprot
Match: A0A6H5J724_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J724_9PHAE) HSP 1 Score: 710 bits (1832), Expect = 1.380e-224 Identity = 418/580 (72.07%), Postives = 448/580 (77.24%), Query Frame = 3
Query: 87 IGSASRDTMSADPSVCTGVQQSAASMAASDVTHAVATASSAMPSHADPRGHVAVTSTQA-SQLGHGRGMQNMWAHLPVSAATQHLARPTVVGAVAEATAAAHAYARAQGAPFGGWASTHGAGQLACSSAGTSASPTSASFTGIPPRAPPACNIAXXXXXMSAAVMAYPLAPFHHPGQEPAVPGTCIEPTSYEAQIRADLTPSMW-GSGGGGMSSGSTFQAAQRPLVASGNDGRCSPTLPQQQHVDGAAAMRGDAASSTSANGERLEPSLTSSSEKTPXXXAVAATEPLPEPVSAVVSQSTSAGLPSATATAPAKMVPALPSVQPTRPPGRVLRGGERTPTPPGAHGSSALSGAVIGGPAAAGGQSARVGTPSPIPPPRSAPESAVDTWPSSGKGAGAGGAALGTLVEGVLEETGRESCVGGAGGXXXXXXXXXXXXXXXXXGEEQKLERARVAKRLRREALLRRCITSAEHLHLEFRSVEAADAMDRGDDELSRLYLTEGDSIIPDNTRWGVRPRGQPLPYDCLFPDDKARGAVRQGTSAGGRKPARNXXXXXXXXXXXXXXXXXXSTAEQPEFTGEWRD 1820
+GS S+DT A PS CT S SMAA DV+HAV TASSAMPSHADP GHV VTSTQA SQLGHGR +QNMWAHLPVSAAT HL RPTVVGAVAEATAAAHAYARAQ A FG WASTHGAGQ ACSSAG +AS TSASFTGIPPR P ACN MSAAV+A+PLAP HHPG+EPAVPGTC E TSYEAQIRA LTPSMW GS GG + +GSTFQAAQRP VASGNDGR +P LPQQQHVDGAAA RGDA STS NGERLEPSL+SSSEK P A+A T PLP+PVSAVVS+ST A LPSATATAPA MVPAL S QPT+PPGR L GG+RTPTPPG H SS+L V GP A G QSARV T S + PPR SAV+T PSSGKGA A GTLV G LE+T RESCVGGAGG G +QKLERA+VAK+LRREALLRRCITSAE+LHLEFRSVEAADAMDRGDDELSRLYLTE DSIIPDNTRWGVRPRGQPLPYDCLFPDD+ARGAVR+ +SAG ++ ARN STAEQ EF GEWRD
Sbjct: 1699 VGSDSKDTTPAGPSGCTAEHLSV-SMAARDVSHAVTTASSAMPSHADPPGHVVVTSTQAMSQLGHGREIQNMWAHLPVSAATHHLHRPTVVGAVAEATAAAHAYARAQVASFGRWASTHGAGQSACSSAGATASSTSASFTGIPPRVPQACN-------MSAAVLAFPLAPLHHPGREPAVPGTCTEATSYEAQIRAVLTPSMWRGSWGGAIRTGSTFQAAQRPTVASGNDGRYNPMLPQQQHVDGAAASRGDATPSTSTNGERLEPSLSSSSEKAPPPLAMAGTGPLPQPVSAVVSRSTPAALPSATATAPATMVPALQSTQPTQPPGRALNGGKRTPTPPGTHESSSLPRVVAAGPPAPGSQSARVSTSSSLLPPRGTSGSAVNTCPSSGKGAXXXXXASGTLVGGELEKTRRESCVGGAGGGGAPAKGQPAVGREGVEGVQQKLERAKVAKKLRREALLRRCITSAENLHLEFRSVEAADAMDRGDDELSRLYLTERDSIIPDNTRWGVRPRGQPLPYDCLFPDDEARGAVRRKSSAGDQRLARNKKCRKGSWGGSRGGGRR-STAEQAEFVGEWRD 2269
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 3221 |
| Cds size | 1713 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1483.3445.1 >prot_E-fasciculatus_F_contig1483.3445.1 ID=prot_E-fasciculatus_F_contig1483.3445.1|Name=mRNA_E-fasciculatus_F_contig1483.3445.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=571bp
MSADPSVCTGVQQSAASMAASDVTHAVATASSAMPSHADPRGHVAVTSTQ
ASQLGHGRGMQNMWAHLPVSAATQHLARPTVVGAVAEATAAAHAYARAQG
APFGGWASTHGAGQLACSSAGTSASPTSASFTGIPPRAPPACNIAPPACN
MSAAVMAYPLAPFHHPGQEPAVPGTCIEPTSYEAQIRADLTPSMWGSGGG
GMSSGSTFQAAQRPLVASGNDGRCSPTLPQQQHVDGAAAMRGDAASSTSA
NGERLEPSLTSSSEKTPPPPAVAATEPLPEPVSAVVSQSTSAGLPSATAT
APAKMVPALPSVQPTRPPGRVLRGGERTPTPPGAHGSSALSGAVIGGPAA
AGGQSARVGTPSPIPPPRSAPESAVDTWPSSGKGAGAGGAALGTLVEGVL
EETGRESCVGGAGGGGAPAKGQPAVGREAVEGEEQKLERARVAKRLRREA
LLRRCITSAEHLHLEFRSVEAADAMDRGDDELSRLYLTEGDSIIPDNTRW
GVRPRGQPLPYDCLFPDDKARGAVRQGTSAGGRKPARNKKRRKGSSGGSR
GGGGRRSTAEQPEFTGEWRD* back to topmRNA from alignment at E-fasciculatus_F_contig1483:6331..10347+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1483.3445.1 ID=mRNA_E-fasciculatus_F_contig1483.3445.1|Name=mRNA_E-fasciculatus_F_contig1483.3445.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4017bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1483:6331..10347+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCGACGGCGACAGCAGCAGCTGTGGCAACCGCTGTATCGGGGAAACAA
GCCGCGGCAACACCAGCAGCGGTAGCAGCAAGAACTATTGGGAGCGCTTC
ACGGGACACAATGTCCGCCGACCCCTCGGTTTGTACAGGAGTACAACAAT
CAGCGGCAAGCATGGCGGCAAGCGATGTCACCCATGCCGTGGCGACGGCT
TCCTCGGCAATGCCGTCACACGCCGACCCGCGTGGGCATGTGGCGGTAAC
ATCGACTCAAGCATCGCAGCTTGGTCATGGCCGTGGGATGCAGAACATGT
GGGCTCACCTTCCTGTCTCCGCCGCGACACAGCATCTGGCTCGCCCAACC
GTGGTAGGGGCCGTTGCTGAGGCGACTGCAGCGGCACACGCTTACGCGCG
CGCCCAAGGGGCTCCTTTTGGAGGGTGGGCATCGACGCACGGGGCGGGGC
AGCTGGCGTGTAGTTCGGCCGGCACGTCAGCATCACCAACGAGCGCCAGC
TTCACCGGAATACCACCAAGAGCGCCGCCGGCTTGCAACATGTCCGCTGC
AGTCGCCTCAGCAACGGCCCCTACCACGGTTGGGCGAGCCAGATGCTGTG
TCGCNNNNNNNNNNGAATACCACCAAGAGCGCCGCCGGCTTGCAACATGT
CCGCGGCGGTCATGGCATACCCTTTGGCCCCGTTTCACCATCCCGGCCAG
GAGCCTGCCGTTCCTGGAACTTGTATAGAGCCAACATCATACGAGGCACA
GATCCGCGCTGATCTAACGCCTAGCATGTGGGGTTCGGGGGGGGGTGGGA
TGAGTTCGGGTTCAACCTTCCAGGCGGCCCAGCGGCCTCTTGTTGCTTCC
GGTAACGATGGACGGTGTAGTCCGACGTTGCCACAACAGCAGCACGTGGA
CGGCGCGGCGGCCATGCGTGGCGATGCTGCCTCCTCCACGTCTGCCAATG
GCGAAAGACTCGAGCCCAGCTTGACTTCTTCGAGCGAGAAGACACCACCA
CCGCCTGCGGTGGCCGCTACTGAGCCATTGCCGGAACCCGTCTCAGCCGT
TGTCAGCCAGAGCACCTCGGCCGGCTTGCCTTCTGCTACGGCTACTGCTC
CAGCCAAAATGGTCCCCGCGTTACCGTCGGTCCAACCAACGCGGCCCCCC
GGTCGTGTACTGAGAGGAGGGGAGAGAACGCCCACTCCTCCAGGCGCCCA
TGGGTCTTCAGCTCTATCGGGAGCCGTGATCGGTGGTCCTGCAGCCGCCG
GGGGGCAATCTGCTCGAGTCGGCACACCGTCTCCAATACCACCGCCTCGG
AGTGCGCCTGAAAGTGCCGTCGATACGTGGCCATCCTCGGGAAAGGGGGC
CGGCGCAGGGGGTGCTGCTTTGGGGACGCTTGTCGAAGGTGTGCTCGAGG
AAACCGGGAGAGAGTCTTGTGTTGGTGGGGCCGGAGGAGGAGGGGCGCCA
GCCAAGGGTCAACCTGCTGTCGGGCGTGAGGCGGTGGAGGGGGAAGAACA
AAAGCTGGAGAGGGCTAGGGTTGCGAAAAGGCTCAGGCGAGAGGCGTTGT
TACGCCGTTGCATCACCAGCGCCGAGCACCTCCACCTCGAGTTTCGGAGC
GTGGAAGCGGCGGATGCGATGGACCGTGGTGACGATGAACTCTCCAGACT
GTACTTGACGGGTGAGCACTTGGGTAGTACTTTCACGATGTTATTTATGT
TTGGCTGTGTACTCGAGGGTATTTCGCTATTCTGTGGCCGGACGCACAGG
GTGGTTCACTGTGGAACTATTGATGTTGCCCACAACATGACCGCTTGGGT
GCCTCTTGGTTCAAGAGCTCACCGCGGTCTGAAATGCATCCGGAAGCGTG
CTCTTTGTGTATGTCAACTAAACGTGTTCCACCAACCCGGACTTTGTCAG
TGGAGTAATCGATGGTCGGCTGGTGCTTCATAGTGCCGATACGCCCTACA
TGGTGAAAAGCTTGCCTGCACTCCCAATAGGGCTGTGGATTGAACCTGAA
ACTATCATTTCACTCCCGTGAAGCAAATCTGGTGCTTGCTGTTTTTCATG
CCGATATAGCCTCGTGTGTGCTCAAAATGTCAATGAAACGCTTTGATTTC
ATCACTTCGGCTGGAAGGAATTGGGGTTCGGGTGGTATTTCCAGCATACA
GTATACCACCTGCGCTAGACCAGCTTGACTTTTTCGTCAGCGCGACCCTA
TCTACCAGCGCTGTACCATACTCGTCGGTGCGACAGAAGGCACCCCCTCT
GTGGTGTTCACAAAGTGGGGACGACCGCGGCCAATCCACCACCAAAAGTA
GCCTCCTCCTCGCCGTTCATCACGCGCCGCCCTCTGTTGCCAACCCCGCC
CCGGATCCAACCACCACGCAGAGGGAGATTCTATCATCCCCGACAATACC
CGGTGGGGAGTAAGGCCCCGCGGGCAGCCCCTGCCTTACGACTGTCTGTT
CCCGGACGACAAAGCACGGGGTGCCGTCAGGCAGGGAACTTCCGCGGGCG
GTCGAAAGCCGGCGCGAAACAAGAAACGCCGTAAAGGTTCTTCCGGTGGT
AGTCGTGGTGGTGGTGGGAGAAGATCGACGGCAGAGCAGCCGGAGTTCAC
TGGAGAATGGCGCGATTGACTGATCGCTTCAGGCGATAGGAGGTCCCCCC
TTGCTTGGTGATGAGTGCCTTGCTGGATGACCAACGTGTGCATATTCGTG
TGCCTCACGCGTGCTCAACGATCGGAGGGAAACAACCACGGTTACCTGAG
TGTCGTGATGAAAGTTTATGGCAGGTATCCGTTGGTTGGAGAGAAGTCGG
GAATTCATTGGCACTTAGAGCGCGAAGGAAATAGGGCTTATCGAGCGAAA
CGACCGAGCAGGGTGAGACGCGGGAGATCTATCCCGGGGAAACTTCAAGT
TACGCGTGGTCTATGGTGGGAATGATTGGTTGTGTTGCGTAGAGACTGCA
TGATAAGGGTGGAATAACGCGGTGGTTAATGCCCTTGGGGCACACAATAT
AAAGTACTTGATACAATACCTGTAACCGTGAGCAATACCCGGAAAAGTGT
TCGTGTGTTTTTTTGTTTTGTGTTCTTCACTTCAAATCAGCGCTCTAAGC
GATTTTGCAGTTTACTCCAACCCGTGGCCACACAGAAGGGTTCCGTTCCT
CTCGCTAAGACCTCCTACCCACCTCTGCGGTACTTTGCCTTAGAGTTTAT
ATTCGAGAAGAGTGCAGCACTCTCATTCCTCTTTGTACACACGGACTAGC
GCTTTCCCCCCAGGCCAGGAACAGAAGCGGGATTTTAACCCCTGACCCTG
GCCACCAAAAGGTTTTTGAGTTTACCACGTAGATAACCGGGGCGACCGGC
ATTGATACTACTACTGTGTGCGTGAGCAATATTCGCTCTGCTTGGCCCGG
CTTACTCATGCTGTTCATGTGGTGGCTGGTCAACAGGTTTGGTCCTCCTT
ATTCTATTGTTCTTCAATCATCTGTAGCTTTGCCCCCGTCTTAATAACTT
GTGGCTGTGTCGCGATGTTGCTTGTTGGCTGATCGCCCTCGTAGTCTCGT
CGAAACATTTTTGTACGATGATTCGTCGGTCTACCATCCCCGGCGATCCG
AGGGCGTAGCGGTCCGCTGGGGAATCGGGCGGCGGCCTGCGTCGTTATTT
TCGAACCATTAAGAAGCCCGTGTAAGACAGATGGTCGATCTGTTTCGTGG
TGGCACTTGGAGAGATGGGCGTCTGTTGTTGTTAGTTGTCGCGGCTCCAT
TGGGCATGGGTTGGTTTTTCGAATGCAATACCGACCGGGGTGGGTTTAGT
CGAGGAGATTACTTTTGAAGAAGTACATGGATGCCTCTGTTCCCCTCACG
ACACGGGATAGACTTCCTTCACATTTCAATCGTGAGGAGAGTGACGTCAG
CACGCCGCGGCAACGACATGGGCCGATGCAGAAGGAGCGCTGTGTCGGCA
TGCCAAAATATAGGTGCATGAAGAGACCGTCACTCGGTATCAGCTTGGAG
CGTGCTGTCGCCTGCAC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1483:6331..10347+ >mRNA_E-fasciculatus_F_contig1483.3445.1 ID=mRNA_E-fasciculatus_F_contig1483.3445.1|Name=mRNA_E-fasciculatus_F_contig1483.3445.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3426bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1483:6331..10347+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCGCCGACCCCTCGGTTTGTACAGGAGTACAACAATCAGCGGCAAG
CATGGCGGCAAGCGATGTCACCCATGCCGTGGCGACGGCTTCCTCGGCAA
TGCCGTCACACGCCGACCCGCGTGGGCATGTGGCGGTAACATCGACTCAA
GCATCGCAGCTTGGTCATGGCCGTGGGATGCAGAACATGTGGGCTCACCT
TCCTGTCTCCGCCGCGACACAGCATCTGGCTCGCCCAACCGTGGTAGGGG
CCGTTGCTGAGGCGACTGCAGCGGCACACGCTTACGCGCGCGCCCAAGGG
GCTCCTTTTGGAGGGTGGGCATCGACGCACGGGGCGGGGCAGCTGGCGTG
TAGTTCGGCCGGCACGTCAGCATCACCAACGAGCGCCAGCTTCACCGGAA
TACCACCAAGAGCGCCGCCGGCTTGCAACATATGTCCGCCGACCCCTCGG
TTTGTACAGGAGTACAACAATCAGCGGCAAGCATGGCGGCAAGCGATGTC
ACCCATGCCGTGGCGACGGCTTCCTCGGCAATGCCGTCACACGCCGACCC
GCGTGGGCATGTGGCGGTAACATCGACTCAAGCATCGCAGCTTGGTCATG
GCCGTGGGATGCAGAACATGTGGGCTCACCTTCCTGTCTCCGCCGCGACA
CAGCATCTGGCTCGCCCAACCGTGGTAGGGGCCGTTGCTGAGGCGACTGC
AGCGGCACACGCTTACGCGCGCGCCCAAGGGGCTCCTTTTGGAGGGTGGG
CATCGACGCACGGGGCGGGGCAGCTGGCGTGTAGTTCGGCCGGCACGTCA
GCATCACCAACGAGCGCCAGCTTCACCGGAATACCACCAAGAGCGCCGCC
GGCTTGCAACATAGCGCCGCCGGCTTGCAACATGTCCGCGGCGGTCATGG
CATACCCTTTGGCCCCGTTTCACCATCCCGGCCAGGAGCCTGCCGTTCCT
GGAACTTGTATAGAGCCAACATCATACGAGGCACAGATCCGCGCTGATCT
AACGCCTAGCATGTGGGGTTCGGGGGGGGGTGGGATGAGTTCGGGTTCAA
CCTTCCAGGCGGCCCAGCGGCCTCTTGTTGCTTCCGGTAACGATGGACGG
TGTAGTCCGACGTTGCCACAACAGCAGCACGTGGACGGCGCGGCGGCCAT
GCGTGGCGATGCTGCCTCCTCCACGTCTGCCAATGGCGAAAGACTCGAGC
CCAGCTTGACTTCTTCGAGCGAGAAGACACCACCACCGCCTGCGGTGGCC
GCTACTGAGCCATTGCCGGAACCCGTCTCAGCCGTTGTCAGCCAGAGCAC
CTCGGCCGGCTTGCCTTCTGCTACGGCTACTGCTCCAGCCAAAATGGTCC
CCGCGTTACCGTCGGTCCAACCAACGCGGCCCCCCGGTCGTGTACTGAGA
GGAGGGGAGAGAACGCCCACTCCTCCAGGCGCCCATGGGTCTTCAGCTCT
ATCGGGAGCCGTGATCGGTGGTCCTGCAGCCGCCGGGGGGCAATCTGCTC
GAGTCGGCACACCGTCTCCAATACCACCGCCTCGGAGTGCGCCTGAAAGT
GCCGTCGATACGTGGCCATCCTCGGGAAAGGGGGCCGGCGCAGGGGGTGC
TGCTTTGGGGACGCTTGTCGAAGGTGTGCTCGAGGAAACCGGGAGAGAGT
CTTGTGTTGGTGGGGCCGGAGGAGGAGGGGCGCCAGCCAAGGGTCAACCT
GCTGTCGGGCGTGAGGCGGTGGAGGGGGAAGAACAAAAGCTGGAGAGGGC
TAGGGTTGCGAAAAGGCTCAGGCGAGAGGCGTTGTTACGCCGTTGCATCA
CCAGCGCCGAGCACCTCCACCTCGAGTTTCGGAGCGTGGAAGCGGCGGAT
GCGATGGACCGTGGTGACGATGAACTCTCCAGACTGTACTTGACGGAGCG
CCGCCGGCTTGCAACATGTCCGCGGCGGTCATGGCATACCCTTTGGCCCC
GTTTCACCATCCCGGCCAGGAGCCTGCCGTTCCTGGAACTTGTATAGAGC
CAACATCATACGAGGCACAGATCCGCGCTGATCTAACGCCTAGCATGTGG
GGTTCGGGGGGGGGTGGGATGAGTTCGGGTTCAACCTTCCAGGCGGCCCA
GCGGCCTCTTGTTGCTTCCGGTAACGATGGACGGTGTAGTCCGACGTTGC
CACAACAGCAGCACGTGGACGGCGCGGCGGCCATGCGTGGCGATGCTGCC
TCCTCCACGTCTGCCAATGGCGAAAGACTCGAGCCCAGCTTGACTTCTTC
GAGCGAGAAGACACCACCACCGCCTGCGGTGGCCGCTACTGAGCCATTGC
CGGAACCCGTCTCAGCCGTTGTCAGCCAGAGCACCTCGGCCGGCTTGCCT
TCTGCTACGGCTACTGCTCCAGCCAAAATGGTCCCCGCGTTACCGTCGGT
CCAACCAACGCGGCCCCCCGGTCGTGTACTGAGAGGAGGGGAGAGAACGC
CCACTCCTCCAGGCGCCCATGGGTCTTCAGCTCTATCGGGAGCCGTGATC
GGTGGTCCTGCAGCCGCCGGGGGGCAATCTGCTCGAGTCGGCACACCGTC
TCCAATACCACCGCCTCGGAGTGCGCCTGAAAGTGCCGTCGATACGTGGC
CATCCTCGGGAAAGGGGGCCGGCGCAGGGGGTGCTGCTTTGGGGACGCTT
GTCGAAGGTGTGCTCGAGGAAACCGGGAGAGAGTCTTGTGTTGGTGGGGC
CGGAGGAGGAGGGGCGCCAGCCAAGGGTCAACCTGCTGTCGGGCGTGAGG
CGGTGGAGGGGGAAGAACAAAAGCTGGAGAGGGCTAGGGTTGCGAAAAGG
CTCAGGCGAGAGGCGTTGTTACGCCGTTGCATCACCAGCGCCGAGCACCT
CCACCTCGAGTTTCGGAGCGTGGAAGCGGCGGATGCGATGGACCGTGGTG
ACGATGAACTCTCCAGACTGTACTTGACGGAGGGAGATTCTATCATCCCC
GACAATACCCGGTGGGGAGTAAGGCCCCGCGGGCAGCCCCTGCCTTACGA
CTGTCTGTTCCCGGACGACAAAGCACGGGGTGCCGTCAGGCAGGGAACTT
CCGCGGGCGGTCGAAAGCCGGCGCGAAACAAGAAACGCCGTAAAGGTTCT
TCCGGTGGTAGTCGTGGTGGTGGTGGGAGAAGATCGACGGCAGAGCAGCC
GGAGTTCACTGGAGAATGGCGCGATTGAAGGGAGATTCTATCATCCCCGA
CAATACCCGGTGGGGAGTAAGGCCCCGCGGGCAGCCCCTGCCTTACGACT
GTCTGTTCCCGGACGACAAAGCACGGGGTGCCGTCAGGCAGGGAACTTCC
GCGGGCGGTCGAAAGCCGGCGCGAAACAAGAAACGCCGTAAAGGTTCTTC
CGGTGGTAGTCGTGGTGGTGGTGGGAGAAGATCGACGGCAGAGCAGCCGG
AGTTCACTGGAGAATGGCGCGATTGA back to top
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