mRNA_E-fasciculatus_F_contig14829.3443.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Match: D7G4T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T8_ECTSI) HSP 1 Score: 219 bits (557), Expect = 3.800e-60 Identity = 134/140 (95.71%), Postives = 137/140 (97.86%), Query Frame = 2
Query: 17 SALAHVSAALAYPGGVAGLXXXXXXXXXXXXXXXXXXXXXPSAAALAANKVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVMRIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRPKAHAA 436
SA+AHVSAALAYPGGVAGL XXXXXXXXXXXXXXXXXXXX +AALAANKVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPV+RIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRPKAHAA
Sbjct: 697 SAMAHVSAALAYPGGVAGLPXXXXXXXXXXXXXXXXXXXXXXSAALAANKVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVIRIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRPKAHAA 836
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Match: A0A6H5L3N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N5_9PHAE) HSP 1 Score: 161 bits (407), Expect = 3.300e-40 Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 2
Query: 2 SAIASSALAHVSAALAYPGGVAGLXXXXXXXXXXXXXXXXXXXXXPSAAALAANKVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVMRIAMGPDGTNFAFIELRTEE 349
SAIASSA+AHVSAALAYPGGVAG XXXXXXXXXXXXXXXXXXXXX +AALAANKVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPV+RIAMGPDGTNFAFIELRTEE
Sbjct: 767 SAIASSAMAHVSAALAYPGGVAGXXXXXXXXXXXXXXXXXXXXXXXXSAALAANKVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVIRIAMGPDGTNFAFIELRTEE 882
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Match: A0A7S2V6E6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.170e-9 Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 2
Query: 158 ANKVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVMRIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRP 421
A+K REL VG P G S + L +FLNAA+ +K+ T+ GNP++ + FAFIELR+ EETN L ++GI LK GRP
Sbjct: 202 ADKAFRELFVGNTPPGTSELVLMEFLNAALNQVKLTTAPGNPIIGCRVS---NKFAFIELRSAEETNNCLS-LNGIPFMGQLLKIGRP 285
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Match: A0A7S2FI96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI96_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 8.670e-8 Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 2
Query: 164 KVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVMRIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRPKAH 430
KV REL +G ++ V LQ+F+ AAMQ + + T GNP++ + FAF+ELR+ EETN L ++GI L+ GRP +
Sbjct: 75 KVYRELFIGNTSPEMNEVDLQEFMGAAMQQVGLTTQPGNPILTTRLSG---KFAFVELRSVEETNNALN-LNGIPYMGMSLRVGRPSKY 159
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Match: W6UHF8_ECHGR (Splicing factor U2AF subunit n=1 Tax=Echinococcus granulosus TaxID=6210 RepID=W6UHF8_ECHGR) HSP 1 Score: 58.2 bits (139), Expect = 1.300e-6 Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 2
Query: 137 PSAAALAANKVM--RELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVMRIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRPK 424
P+ A ++N R L++G +P G++ + F N+ +Q + S G PV+ + + +FAFIELR+ EET ATL + GI C L+ RP+
Sbjct: 8 PTIATPSSNSTRQARRLYIGSIPLGITSETMVTFFNSELQTRGLCQSVGEPVVCAQVNSE-RHFAFIELRSVEETTATLS-LDGINCLGSTLRIRRPR 103
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Match: A7RJT7_NEMVE (Splicing factor U2AF subunit n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RJT7_NEMVE) HSP 1 Score: 60.5 bits (145), Expect = 1.340e-6 Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query: 173 RELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVMRIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRPKAHAAVRQVYCNYSIPI 472
R L+VG +P GV+ + +F NA M+ K+ T+ GNPV+ + + NFAFIELR+ EET + GI LK RPK + + + N S+ +
Sbjct: 6 RRLYVGNIPFGVTENLMIEFFNAKMKEAKLNTAPGNPVIAAQINTE-QNFAFIELRSVEETTQAMA-FDGIILQGQALKIRRPKDYQPIPGMSENASVHV 103
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Match: A0A3M6UG56_POCDA (Splicing factor U2AF subunit n=3 Tax=Astrocoeniina TaxID=123757 RepID=A0A3M6UG56_POCDA) HSP 1 Score: 60.1 bits (144), Expect = 2.270e-6 Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 2
Query: 173 RELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVMRIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRPKAHAAV 439
R L+VG +P G++ + +F NA MQ K+ T+ GNPV+ + + NFAFIELR+ EET + GI LK RPK + +
Sbjct: 74 RRLYVGNIPFGITENLMIEFFNAKMQEAKLNTAPGNPVIAAQINLE-QNFAFIELRSVEETTQAMA-FDGIILEGQSLKIRRPKDYQPI 160
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Match: A0A2B4RGN2_STYPI (Splicing factor U2AF subunit n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RGN2_STYPI) HSP 1 Score: 60.1 bits (144), Expect = 2.410e-6 Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 2
Query: 173 RELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVMRIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRPKAHAAV 439
R L+VG +P G++ + +F NA MQ K+ T+ GNPV+ + + NFAFIELR+ EET + GI LK RPK + +
Sbjct: 99 RRLYVGNIPFGITENLMIEFFNAKMQEAKLNTAPGNPVIAAQINLE-QNFAFIELRSVEETTQAMA-FDGIILEGQSLKIRRPKDYQPI 185
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Match: A0A5K3F324_MESCO (Uncharacterized protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3F324_MESCO) HSP 1 Score: 59.3 bits (142), Expect = 5.260e-6 Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 2
Query: 143 AAALAANKVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVMRIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRPK 424
A +L + + R L++G +P G++ + F NA +Q + S G PV+ + + +FAFIELR+ EET A L + GI C L+ RP+
Sbjct: 258 ATSLNSTRQARRLYIGSIPLGITSETMVTFFNAELQTRGLCQSVGEPVVCAQVNSE-RHFAFIELRSVEETTAALS-LDGINCLGSTLRIRRPR 349
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Match: A0A068Y4D2_ECHMU (U2 small nuclear ribonucleoprotein n=3 Tax=Echinococcus TaxID=6209 RepID=A0A068Y4D2_ECHMU) HSP 1 Score: 58.5 bits (140), Expect = 9.520e-6 Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 2
Query: 149 ALAANKVMRELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVMRIAMGPDGTNFAFIELRTEEETNATLGRMSGIQCGTGHLKFGRPK 424
+L + + R L++G +P G++ + F N+ +Q + S G PV+ + + +FAFIELR+ EET ATL + GI C L+ RP+
Sbjct: 259 SLNSTRQARRLYIGSIPLGITSETMVTFFNSELQTRGLCQSVGEPVVCAQVNSE-RHFAFIELRSVEETTATLS-LDGINCLGSTLRIRRPR 348 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14829.3443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14829.3443.1 >prot_E-fasciculatus_F_contig14829.3443.1 ID=prot_E-fasciculatus_F_contig14829.3443.1|Name=mRNA_E-fasciculatus_F_contig14829.3443.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=202bp VGHRVQRLGSRVGCLGVPGRGRGLARYGRRWSHGRTGCGGGGGSGTLRGGback to top mRNA from alignment at E-fasciculatus_F_contig14829:1088..3207+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14829.3443.1 ID=mRNA_E-fasciculatus_F_contig14829.3443.1|Name=mRNA_E-fasciculatus_F_contig14829.3443.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2120bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14829:1088..3207+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14829:1088..3207+ >mRNA_E-fasciculatus_F_contig14829.3443.1 ID=mRNA_E-fasciculatus_F_contig14829.3443.1|Name=mRNA_E-fasciculatus_F_contig14829.3443.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14829:1088..3207+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |