mRNA_E-fasciculatus_F_contig14825.3442.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14825.3442.1
Unique NamemRNA_E-fasciculatus_F_contig14825.3442.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14825.3442.1 vs. uniprot
Match: A0A6H5K5Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q7_9PHAE)

HSP 1 Score: 498 bits (1282), Expect = 3.870e-172
Identity = 275/343 (80.17%), Postives = 294/343 (85.71%), Query Frame = 1 
Query:   61 METYLCAPAARLPNTKRPSGGNVSGDV--NDNFTCHTDGRPGGLTVNSGASSTAVRVANGPNTNRTNGNTRGTPFRADSKRTSPTQPGVKVVPHSMMSGVEG---GNGINLATSQPGTAARSPNAVSRTRGGGVWDTDINDTNNFSFNIDHDDDSVQHGGRQEHGVVAAARGGAATTESPLFRLSERVKGAARASGERRMLKKAASGCSLSPRPGDYANRHNSFSETKQEGGMPLRSQQQHQQGSRPTGMGPGSSRGVGRGQLNADSSRAETPRGGDAQGAQKHTGGGVPAGIGEEATSRFLKAKLAACQAQLEEVLQAHQSSQQETAELRRQCASDQEQTRR 1074
            METYLCAP AR P TKRPSGG V+ DV  ND+  CHTDG  GGLT N   +S  VR+ANG N N TNGNTRG PF ADSKRTSP QPG+KVVPHSMMSGVEG   GNG +LA SQPG AARS  AVSRTRGGGVWDTD NDTNNFSFNIDH+DDS QHGGR+EHG+VA ARG AAT ESPLFRLSERVKGAARASGERRMLKKAASGC+LSPRPGDYANRH+  SE + EGG+PLRSQQQ QQ +RP+G+GPGSSRG GRGQ NADS+  ET RGG AQGAQ HTGGGVPAGIGEEATSRFLKAKLAACQAQL+EVLQAHQ+SQQETAELRRQCASDQEQTRR
Sbjct:    1 METYLCAPPARPPTTKRPSGGKVNDDVDKNDHLKCHTDGHAGGLTANGSTASNVVRIANGANNNSTNGNTRGAPFTADSKRTSPIQPGLKVVPHSMMSGVEGVEGGNGTSLAKSQPGPAARSAMAVSRTRGGGVWDTDTNDTNNFSFNIDHEDDSGQHGGRKEHGLVAMARGDAATAESPLFRLSERVKGAARASGERRMLKKAASGCNLSPRPGDYANRHSGSSEPRHEGGIPLRSQQQQQQVARPSGVGPGSSRGGGRGQQNADSNGGETSRGGAAQGAQNHTGGGVPAGIGEEATSRFLKAKLAACQAQLKEVLQAHQASQQETAELRRQCASDQEQTRR 343
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BLAST of mRNA_E-fasciculatus_F_contig14825.3442.1 vs. uniprot
Match: D7FJ48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ48_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 3.560e-59
Identity = 127/221 (57.47%), Postives = 134/221 (60.63%), Query Frame = 1 
Query:  418 AVSRTRGGGVWDTDINDTNNFSFNIDHDDDSVQHGGRQEHGVVAAARGGAATTESPLFRLSERVKGAARASGERRMLKKAASGCSLSPRPGDYANRHNSFSETKQEGGMPLRSQQQHQQGSRPTGMGPGSSRGVGRGQLNADSSRAETPRGGDAQGAQKHTGGGVPAGIGEEATSRFLKAKLAACQAQLEEVLQAHQSSQQETAELRRQCASDQEQTRRAA 1080
            AVSR+RGGGVWDTD +DTNNFSFNIDH+DDS QHGGR+EHGVVA ARG AATTESPLFRLSERVKGAARASGERRMLKK ASGCSLSPRPGDYAN H+  S                                                                              AKLAACQAQLEEVLQAHQ+SQQETAELRRQCASDQ+QTRR A
Sbjct:    2 AVSRSRGGGVWDTDTDDTNNFSFNIDHEDDSGQHGGRKEHGVVAMARGDAATTESPLFRLSERVKGAARASGERRMLKKTASGCSLSPRPGDYANNHSGSS------------------------------------------------------------------------------AKLAACQAQLEEVLQAHQASQQETAELRRQCASDQDQTRRTA 144
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14825.3442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5Q7_9PHAE3.870e-17280.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ48_ECTSI3.560e-5957.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14825contigE-fasciculatus_F_contig14825:129..2417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue6.6e-50
Seed eggNOG ortholog2880.D7FJ48
Preferred nameTEX9
EggNOG OGs28H83@1,2QPKV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1137
Cds size1137
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14825.3442.1prot_E-fasciculatus_F_contig14825.3442.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14825 129..2417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927964.674163-CDS-E-fasciculatus_F_contig14825:128..8481622927964.674163-CDS-E-fasciculatus_F_contig14825:128..848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14825 129..848 +
1695995770.0534954-CDS-E-fasciculatus_F_contig14825:128..8481695995770.0534954-CDS-E-fasciculatus_F_contig14825:128..848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14825 129..848 +
1622927964.6894426-CDS-E-fasciculatus_F_contig14825:1342..15661622927964.6894426-CDS-E-fasciculatus_F_contig14825:1342..1566Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14825 1343..1566 +
1695995770.0656714-CDS-E-fasciculatus_F_contig14825:1342..15661695995770.0656714-CDS-E-fasciculatus_F_contig14825:1342..1566Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14825 1343..1566 +
1622927964.7043412-CDS-E-fasciculatus_F_contig14825:2068..21681622927964.7043412-CDS-E-fasciculatus_F_contig14825:2068..2168Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14825 2069..2168 +
1695995770.074378-CDS-E-fasciculatus_F_contig14825:2068..21681695995770.074378-CDS-E-fasciculatus_F_contig14825:2068..2168Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14825 2069..2168 +
1622927964.7218678-CDS-E-fasciculatus_F_contig14825:2324..24171622927964.7218678-CDS-E-fasciculatus_F_contig14825:2324..2417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14825 2325..2417 +
1695995770.0836382-CDS-E-fasciculatus_F_contig14825:2324..24171695995770.0836382-CDS-E-fasciculatus_F_contig14825:2324..2417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14825 2325..2417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14825.3442.1

>prot_E-fasciculatus_F_contig14825.3442.1 ID=prot_E-fasciculatus_F_contig14825.3442.1|Name=mRNA_E-fasciculatus_F_contig14825.3442.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=379bp
ATQLRLNAELDAGARAAISDMETYLCAPAARLPNTKRPSGGNVSGDVNDN
FTCHTDGRPGGLTVNSGASSTAVRVANGPNTNRTNGNTRGTPFRADSKRT
SPTQPGVKVVPHSMMSGVEGGNGINLATSQPGTAARSPNAVSRTRGGGVW
DTDINDTNNFSFNIDHDDDSVQHGGRQEHGVVAAARGGAATTESPLFRLS
ERVKGAARASGERRMLKKAASGCSLSPRPGDYANRHNSFSETKQEGGMPL
RSQQQHQQGSRPTGMGPGSSRGVGRGQLNADSSRAETPRGGDAQGAQKHT
GGGVPAGIGEEATSRFLKAKLAACQAQLEEVLQAHQSSQQETAELRRQCA
SDQEQTRRAARQLQQLQQTKSKESKAKV*
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mRNA from alignment at E-fasciculatus_F_contig14825:129..2417+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14825.3442.1 ID=mRNA_E-fasciculatus_F_contig14825.3442.1|Name=mRNA_E-fasciculatus_F_contig14825.3442.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2289bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14825:129..2417+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGACACAGCTGCGCCTCAATGCAGAGCTAGATGCCGGCGCTCGTGCAGC
CATATCCGACATGGAGACCTACTTATGCGCCCCCGCTGCTCGCCTGCCGA
ACACCAAGAGGCCTAGTGGTGGCAATGTCAGCGGTGACGTCAACGATAAC
TTTACATGTCATACCGATGGTCGTCCTGGCGGTCTTACTGTGAATAGTGG
CGCCAGCAGCACTGCAGTGCGGGTCGCCAATGGGCCCAACACCAACCGAA
CCAACGGCAACACAAGAGGGACACCGTTTAGGGCCGACAGCAAGAGAACA
TCGCCCACCCAGCCTGGTGTAAAGGTTGTCCCTCACTCGATGATGTCGGG
AGTTGAGGGAGGAAACGGAATAAATTTAGCAACATCGCAACCTGGTACTG
CGGCACGCTCTCCGAATGCAGTTTCGAGAACCCGCGGCGGTGGGGTGTGG
GACACCGATATCAACGATACCAACAACTTCAGTTTCAACATCGACCACGA
CGATGATAGCGTTCAGCATGGAGGGAGGCAAGAACACGGGGTCGTCGCAG
CGGCCAGAGGTGGCGCTGCGACGACGGAATCGCCGCTGTTCCGGCTGTCA
GAGAGAGTGAAGGGGGCGGCTAGGGCGTCAGGAGAGCGCAGGATGCTCAA
GAAAGCTGCTAGCGGCTGCAGCCTCTCCCCTCGCCCGGGAGACTACGCCA
ACAGGCACAACAGCTTCTCTGTAAGTTTGAAACTCGAGACATCGATTGAG
CGATCTATTAACGTGGAGAGACACACATGACACCTGTGTCGTTTGGATTT
GGCAAGAGGCGTAGTTGTGGATTAGATGGTTGTTGGCGCGTCGCCATGGT
CGTTTCTTCATCACCAAAATGGTCTACGTTTTTTCTACTGCAAATCAACT
GGGCTAGGGCTAATGACACGCTGGTTATGGGCTTTTTGCAGAACGGCAGA
CCTCCCGTAGGCCTAAGTCGATAGGGAAGGTCTTGCAAGTTGATGTTTGG
CATGCTTCCTCGGGCATACTTCTACGCTCCACACTGCGTTTGCGTTGGTT
TGCAGACCAACAAAGAACCACGCAAGATAGATCACATCACCTTTAGTGTG
GCATTACACCAGCAAACAGCAACACCAGCAGGACACCCCTAGCCCGGGCG
TTTCCTGCGACACGGGCTGTTTCGTTTCAACCGACGAGCAAATTTGAATC
CCCATGACCCCCAGGAAACAAAACAAGAGGGAGGAATGCCCTTGCGATCT
CAGCAGCAACATCAGCAGGGCTCAAGACCGACCGGGATGGGACCGGGCTC
GTCACGGGGAGTAGGAAGAGGGCAGCTAAACGCAGATTCAAGTAGAGCCG
AGACCCCCAGGGGCGGAGATGCCCAGGGTGCCCAAAAGCATACCGGAGGC
GGTGTTCCGGCGGGGATAGGGGAAGAAGCTACCTCAAGGTCATGTGTGAC
AGCACACTGGGTTCATCCTTTGCAGAACTGAAGTTTTGGCTGTCAGACGA
TTCTAAAAGTGGTAATCAGTTTACCGTAGGTTGCATAAGACATCGCACTC
CCTGACCCAATTTTCAAAGCTCGATCGATTACTGCACGACGAACAGGATG
CCGAAATTGAAGTATAGCATACGTTTTCGGAGAGCTATCTATCTCTCTCT
CCACGAGACAGACGGTTCCAACTCCGCCATTTTCGGCACCGTCACTGCTT
TTCCTGCCCAGATATCAATCTTCGAAAATCGGTCCAGGGGGTGTGATATC
TTATGCAGCCTGCGGTACGCGTGCGTCTCCCGTCCGCAAGCTCCCGTGTA
GTCCTAACCCCTGTCTCTATTCTTAGCCCAGTTGAGTTTTGACACAATCC
ATGGCGGCAATTGAAGAACCCACCGTTCATGAACCCAATCTCGCTGACAC
CTGTGCACCGACACATTTTGCCGCTGCTCGTTCGGTTAAGGTTCTTGAAG
GCGAAACTGGCGGCATGCCAAGCACAGCTGGAGGAGGTGCTGCAGGCGCA
TCAGTCTAGCCAGCAGGAGACTGCGGAACTAAGGAGACAGGTAGACTTCT
GTTGCTGCTGCTGCTGCTGCTGTATAGGTTGTTGCTGTCGTTGTTTTCTG
CTGATATCAGATGATAGGTGTCGGTGCTGATGGTGGTGGTATGATACACC
GATGCATAACTTCGACGATGACGGTTCTTTGTGCCGCTCTGATCAGTGTG
CGTCGGATCAAGAACAGACAAGGCGGGCGGCCCGTCAACTACAGCAGCTG
CAGCAAACTAAGTCAAAGGAGAGCAAAGCGAAGGTATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14825:129..2417+

>mRNA_E-fasciculatus_F_contig14825.3442.1 ID=mRNA_E-fasciculatus_F_contig14825.3442.1|Name=mRNA_E-fasciculatus_F_contig14825.3442.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2274bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14825:129..2417+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGACACAGCTGCGCCTCAATGCAGAGCTAGATGCCGGCGCTCGTGCAGC
CATATCCGACATGGAGACCTACTTATGCGCCCCCGCTGCTCGCCTGCCGA
ACACCAAGAGGCCTAGTGGTGGCAATGTCAGCGGTGACGTCAACGATAAC
TTTACATGTCATACCGATGGTCGTCCTGGCGGTCTTACTGTGAATAGTGG
CGCCAGCAGCACTGCAGTGCGGGTCGCCAATGGGCCCAACACCAACCGAA
CCAACGGCAACACAAGAGGGACACCGTTTAGGGCCGACAGCAAGAGAACA
TCGCCCACCCAGCCTGGTGTAAAGGTTGTCCCTCACTCGATGATGTCGGG
AGTTGAGGGAGGAAACGGAATAAATTTAGCAACATCGCAACCTGGTACTG
CGGCACGCTCTCCGAATGCAGTTTCGAGAACCCGCGGCGGTGGGGTGTGG
GACACCGATATCAACGATACCAACAACTTCAGTTTCAACATCGACCACGA
CGATGATAGCGTTCAGCATGGAGGGAGGCAAGAACACGGGGTCGTCGCAG
CGGCCAGAGGTGGCGCTGCGACGACGGAATCGCCGCTGTTCCGGCTGTCA
GAGAGAGTGAAGGGGGCGGCTAGGGCGTCAGGAGAGCGCAGGATGCTCAA
GAAAGCTGCTAGCGGCTGCAGCCTCTCCCCTCGCCCGGGAGACTACGCCA
ACAGGCACAACAGCTTCTCTGCGACACAGCTGCGCCTCAATGCAGAGCTA
GATGCCGGCGCTCGTGCAGCCATATCCGACATGGAGACCTACTTATGCGC
CCCCGCTGCTCGCCTGCCGAACACCAAGAGGCCTAGTGGTGGCAATGTCA
GCGGTGACGTCAACGATAACTTTACATGTCATACCGATGGTCGTCCTGGC
GGTCTTACTGTGAATAGTGGCGCCAGCAGCACTGCAGTGCGGGTCGCCAA
TGGGCCCAACACCAACCGAACCAACGGCAACACAAGAGGGACACCGTTTA
GGGCCGACAGCAAGAGAACATCGCCCACCCAGCCTGGTGTAAAGGTTGTC
CCTCACTCGATGATGTCGGGAGTTGAGGGAGGAAACGGAATAAATTTAGC
AACATCGCAACCTGGTACTGCGGCACGCTCTCCGAATGCAGTTTCGAGAA
CCCGCGGCGGTGGGGTGTGGGACACCGATATCAACGATACCAACAACTTC
AGTTTCAACATCGACCACGACGATGATAGCGTTCAGCATGGAGGGAGGCA
AGAACACGGGGTCGTCGCAGCGGCCAGAGGTGGCGCTGCGACGACGGAAT
CGCCGCTGTTCCGGCTGTCAGAGAGAGTGAAGGGGGCGGCTAGGGCGTCA
GGAGAGCGCAGGATGCTCAAGAAAGCTGCTAGCGGCTGCAGCCTCTCCCC
TCGCCCGGGAGACTACGCCAACAGGCACAACAGCTTCTCTGAAACAAAAC
AAGAGGGAGGAATGCCCTTGCGATCTCAGCAGCAACATCAGCAGGGCTCA
AGACCGACCGGGATGGGACCGGGCTCGTCACGGGGAGTAGGAAGAGGGCA
GCTAAACGCAGATTCAAGTAGAGCCGAGACCCCCAGGGGCGGAGATGCCC
AGGGTGCCCAAAAGCATACCGGAGGCGGTGTTCCGGCGGGGATAGGGGAA
GAAGCTACCTCAAGGAAACAAAACAAGAGGGAGGAATGCCCTTGCGATCT
CAGCAGCAACATCAGCAGGGCTCAAGACCGACCGGGATGGGACCGGGCTC
GTCACGGGGAGTAGGAAGAGGGCAGCTAAACGCAGATTCAAGTAGAGCCG
AGACCCCCAGGGGCGGAGATGCCCAGGGTGCCCAAAAGCATACCGGAGGC
GGTGTTCCGGCGGGGATAGGGGAAGAAGCTACCTCAAGGTTCTTGAAGGC
GAAACTGGCGGCATGCCAAGCACAGCTGGAGGAGGTGCTGCAGGCGCATC
AGTCTAGCCAGCAGGAGACTGCGGAACTAAGGAGACAGGTTCTTGAAGGC
GAAACTGGCGGCATGCCAAGCACAGCTGGAGGAGGTGCTGCAGGCGCATC
AGTCTAGCCAGCAGGAGACTGCGGAACTAAGGAGACAGTGTGCGTCGGAT
CAAGAACAGACAAGGCGGGCGGCCCGTCAACTACAGCAGCTGCAGCAAAC
TAAGTCAAAGGAGAGCAAAGCGAAGGTATGATGTGCGTCGGATCAAGAAC
AGACAAGGCGGGCGGCCCGTCAACTACAGCAGCTGCAGCAAACTAAGTCA
AAGGAGAGCAAAGCGAAGGTATGA
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