mRNA_E-fasciculatus_F_contig14821.3441.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE) HSP 1 Score: 413 bits (1062), Expect = 8.910e-127 Identity = 315/393 (80.15%), Postives = 321/393 (81.68%), Query Frame = 2
Query: 17 MEEPPSSSRPAALARGANNDDSSRNNVNNVNNVKGHESSADDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVPDSPQAGDPNGHPLDEGGCFICKKNDKQDLILLCDGCEGEYHTFCVDPPLLKIPDDEWFCDHCKAAGKAGPKESKYTGVYWSGTTRIGGVRTVVWTAKIRRRSGRREAIIGSYHSEKEAAGAYDAEAKRVFGDTHPVLNFPNGSWEDEPXXXXXXXXXXXXXXXXXXXXXXXQPVTQXXXXXXXXXXXXXXXXXXXXXXXQSRPVEQPAKQXXXXXXXXXXXXXXXXPP-IETPTPARKEAAVPIKTSQAVPQLRPPVTSGHYPDAGEGPEGSDAWVDISDVGGQGTS 1192
ME+PPSSSRPAALARGAN+DDS R NNVKGHE S D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PAVPDS QAGDPNGHPLD+GGCF+CKKNDKQDLILLCDGCEGEYHTFCVDPPL KIPDDEWFC HCKA GKAGPKESKYTGVYWSGTTRIGGVRTVVWTAKIRRRSGRREAIIGSYHSEKEAAGAYDAEAKRVFGDTHPVLNFPNGSWEDEP XXXXX QP Q XXXXXXXXXXXXXX VEQPAKQXXXXXXX PP +ET A PIKTSQAVP LRPPV SGHYP AG+GPEGSDAWVDISDVGGQGTS
Sbjct: 1 MEKPPSSSRPAALARGANSDDSIR------NNVKGHERSTD--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPAVPDSLQAGDPNGHPLDQGGCFVCKKNDKQDLILLCDGCEGEYHTFCVDPPLRKIPDDEWFCAHCKATGKAGPKESKYTGVYWSGTTRIGGVRTVVWTAKIRRRSGRREAIIGSYHSEKEAAGAYDAEAKRVFGDTHPVLNFPNGSWEDEPDEXXXXXQPQKAEEKKPQQLKQSQPGLQQPKQPRPVAXXXXXXXXXXXXXXXXXXVEQPAKQXXXXXXXAERPVAVAPPPPVETRXXXXXXXAAPIKTSQAVPPLRPPVISGHYPGAGQGPEGSDAWVDISDVGGQGTS 385
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Match: D7FHY8_ECTSI (Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY8_ECTSI) HSP 1 Score: 369 bits (947), Expect = 3.130e-111 Identity = 239/275 (86.91%), Postives = 245/275 (89.09%), Query Frame = 2
Query: 368 PLDEGGCFICKKNDKQDLILLCDGCEGEYHTFCVDPPLLKIPDDEWFCDHCKAAGKAGPKESKYTGVYWSGTTRIGGVRTVVWTAKIRRRSGRREAIIGSYHSEKEAAGAYDAEAKRVFGDTHPVLNFPNGSWEDEPXXXXXXXXXXXXXXXXXXXXXXXQPVTQXXXXXXXXXXXXXXXXXXXXXXXQSRPVEQPAKQXXXXXXXXXXXXXXXXPPIETPTPARKEAAVPIKTSQAVPQLRPPVTSGHYPDAGEGPEGSDAWVDISDVGGQGTS 1192
P +GGCF+CKKNDKQDLILLCDGCEGEYHTFCVDPPL KIPDDEWFC+HCKAAGKAGPKESKYTGVYWSGTTRIGGVRT VWTAKIRRRSGRREAIIGSYHSEKEAAGAYDAEAKRVFGDTHP LNFPNGSWEDEPXXXXXXXXXXXXXXXXXXXXXXXQPVTQXXXXXXXXXXXXXXXXXXXXXXX VEQPAKQ XXXX P+ET +RKE AV IKTSQAVP LRPPV SGHYP AG+GPEGSDAWVDISDVGGQGTS
Sbjct: 366 PAAKGGCFVCKKNDKQDLILLCDGCEGEYHTFCVDPPLRKIPDDEWFCEHCKAAGKAGPKESKYTGVYWSGTTRIGGVRTAVWTAKIRRRSGRREAIIGSYHSEKEAAGAYDAEAKRVFGDTHPALNFPNGSWEDEPXXXXXXXXXXXXXXXXXXXXXXXQPVTQXXXXXXXXXXXXXXXXXXXXXXXXXXXVEQPAKQQPAKQQRAEPXXXX---PVETRPLSRKEPAVRIKTSQAVPLLRPPVLSGHYPGAGQGPEGSDAWVDISDVGGQGTS 637
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Match: A0A836C2F0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C2F0_9CHLO) HSP 1 Score: 83.2 bits (204), Expect = 2.880e-13 Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 2
Query: 383 GCFICKKNDKQDLILLCDGCEGEYHTFCVDPPLLKIPDDEWFCDHCKAAGKAGPK 547
GC +C ++ + LLCDGCEGEYH +CV+PPLL++PD +WFC C A G A PK
Sbjct: 1572 GCRVCWLDEDKKRTLLCDGCEGEYHCYCVEPPLLEVPDGQWFCPSCTARGMALPK 1626
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Match: A0A7S3DMT8_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DMT8_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 3.640e-13 Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2
Query: 368 PLDEG-----GCFICKKNDKQDLILLCDGCEGEYHTFCVDPPLLKIPDDEWFCDHCK 523
P+DE GC +C ++K D +LLC+ C GEYHTFC++PPL +P++EWFCD CK
Sbjct: 57 PVDENTGPPSGCRVCGMDNKHDKLLLCESCNGEYHTFCLNPPLKSVPENEWFCDRCK 113
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Match: UPI00156103DC (PHD and RING finger domain-containing protein 1 isoform X1 n=5 Tax=Pan paniscus TaxID=9597 RepID=UPI00156103DC) HSP 1 Score: 81.3 bits (199), Expect = 4.790e-13 Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 2
Query: 386 CFICKKNDKQDLILLCDGCEGEYHTFCVDPPLLKIPDDEWFCDHCKAAG-----KAGPKESKYTGVYWSGTTRIGGVRTVVWTAKIRRRSGRREAIIGSYHSEKEAA 691
C +C ++D++D +LLCDGC+ YH C+DPPL ++P DEWFC C A G AGP + + + V T+++R R+GR AI + SE+ A
Sbjct: 185 CEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVVLAADAGPVSEEEVSLLLADV--------VPTTSRLRPRAGRTRAIARTRQSERVRA 283
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Match: A0A2J8IJV7_PANTR (Uncharacterized protein (Fragment) n=6 Tax=Pan troglodytes TaxID=9598 RepID=A0A2J8IJV7_PANTR) HSP 1 Score: 79.7 bits (195), Expect = 6.090e-13 Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 2
Query: 386 CFICKKNDKQDLILLCDGCEGEYHTFCVDPPLLKIPDDEWFCDHCKAAG-----KAGPKESKYTGVYWSGTTRIGGVRTVVWTAKIRRRSGRREAIIGSYHSEKEAA 691
C +C ++D++D +LLCDGC+ YH C+DPPL ++P DEWFC C A G AGP + + + V T+++R R+GR I + SE+ A
Sbjct: 154 CEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVVLAADAGPVSEEEVSLLLADV--------VPTTSRLRPRAGRTRVIARTRQSERVRA 252
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Match: A0A8C6CT70_MOSMO (PHD and ring finger domains 1 n=1 Tax=Moschus moschiferus TaxID=68415 RepID=A0A8C6CT70_MOSMO) HSP 1 Score: 82.0 bits (201), Expect = 6.250e-13 Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query: 386 CFICKKNDKQDLILLCDGCEGEYHTFCVDPPLLKIPDDEWFCDHCKAAGKAGPKESKYTGVYWSGTTRIGGVRTVVWTAKIRRRSGRREAIIGSYHSEKEAA 691
C +C ++D++D +LLCDGC+ YH C+DPPL ++P DEWFC C A G A + TG + V T+++R R+GR AI + SE+ A
Sbjct: 183 CEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGAASVAD---TGPVSEEEVSLLLADVVPTTSRLRPRAGRTRAIARTRQSERVRA 281
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Match: A0A7S2K8C7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8C7_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 7.540e-13 Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 2
Query: 377 EGGCFICKKNDKQDLILLCDGCEGEYHTFCVDPPLLKIPDDEWFCDHC 520
E GC IC K++ +LLC+ C GEYHT+C++PPLL+IPD++W+CD C
Sbjct: 95 EEGCKICGKDNDHSHMLLCEHCNGEYHTYCLNPPLLEIPDNDWYCDEC 142
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Match: A0A2K6SIV9_SAIBB (PHD and ring finger domains 1 n=31 Tax=Platyrrhini TaxID=9479 RepID=A0A2K6SIV9_SAIBB) HSP 1 Score: 81.6 bits (200), Expect = 8.390e-13 Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 2
Query: 386 CFICKKNDKQDLILLCDGCEGEYHTFCVDPPLLKIPDDEWFCDHCKAAG----KAGPKESKYTGVYWSGTTRIGGVRTVVWTAKIRRRSGRREAIIGSYHSEKEAA 691
C +C ++D++D +LLCDGC+ YH C+DPPL ++P DEWFC C A G AGP + + + V T+++R R+GR AI + SE+ A
Sbjct: 239 CEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVLAADAGPVSEEEVSLLLADV--------VPTTSRLRPRAGRTRAIARTRQSERVRA 336
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Match: A0A7S1J8J5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J8J5_9EUGL) HSP 1 Score: 81.3 bits (199), Expect = 8.740e-13 Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2
Query: 374 DEGGCFICKKNDKQDLILLCDGCEGEYHTFCVDPPLLKIPD-DEWFCDHCKAAGK 535
+E GC C N +QD++L+CDGCE EYHTFC+DPPL +IP+ DEWFC C + +
Sbjct: 72 EETGCAACGSNGEQDVLLVCDGCEAEYHTFCLDPPLERIPEADEWFCPVCASGDR 126 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14821.3441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14821.3441.1 >prot_E-fasciculatus_F_contig14821.3441.1 ID=prot_E-fasciculatus_F_contig14821.3441.1|Name=mRNA_E-fasciculatus_F_contig14821.3441.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=410bp MEEPPSSSRPAALARGANNDDSSRNNVNNVNNVKGHESSADDSSSDSGSDback to top mRNA from alignment at E-fasciculatus_F_contig14821:2..2483+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14821.3441.1 ID=mRNA_E-fasciculatus_F_contig14821.3441.1|Name=mRNA_E-fasciculatus_F_contig14821.3441.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2482bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14821:2..2483+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14821:2..2483+ >mRNA_E-fasciculatus_F_contig14821.3441.1 ID=mRNA_E-fasciculatus_F_contig14821.3441.1|Name=mRNA_E-fasciculatus_F_contig14821.3441.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2460bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14821:2..2483+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |