mRNA_E-fasciculatus_F_contig14820.3440.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14820.3440.1
Unique NamemRNA_E-fasciculatus_F_contig14820.3440.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14820.3440.1 vs. uniprot
Match: D7G3Y0_ECTSI (Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y0_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.960e-35
Identity = 89/112 (79.46%), Postives = 94/112 (83.93%), Query Frame = 1 
Query:  202 MVVSSLPASYAFGLVAAGSGA-AAAVGGRAGAANLAARCSSRLSALPTHSGGGGRSALGGFDRPRTLSAFGVLAAGEGQTTTAGRRISRRSKAGVLPLWGSSLSSSCSIYAN 534
            MVVSSLPASYAFGLVAAGSGA AAAVGGRAGAANLA  CSSRLSALPTH  G G+S+ GGFDR R LSAFG+ AAGEG+T TAGRRISRRSKAG LP W SS SSS + Y N
Sbjct:    1 MVVSSLPASYAFGLVAAGSGAVAAAVGGRAGAANLARCCSSRLSALPTH--GVGQSSPGGFDRSRRLSAFGIFAAGEGRTITAGRRISRRSKAGPLPSWTSSPSSSSAFYPN 110
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14820.3440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Y0_ECTSI1.960e-3579.46Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14820contigE-fasciculatus_F_contig14820:2242..3210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue2.8e-32
Seed eggNOG ortholog2880.D7G3Y0
Preferred nameMSK1
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000049,GO:0000166,GO:0000959,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006403,GO:0006412,GO:0006418,GO:0006430,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0015931,GO:0016031,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0022414,GO:0030554,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035670,GO:0035927,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050657,GO:0050658,GO:0051031,GO:0051179,GO:0051234,GO:0051236,GO:0055085,GO:0061458,GO:0070127,GO:0070154,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0099402,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990542
EggNOG free text desc.lysyl-tRNA aminoacylation
EggNOG OGsCOG1190@1,KOG1885@2759
EC6.1.1.6
COG Functional cat.J
BiGG ReactioniMM904.YNL073W,iND750.YNL073W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categorysignal anchor
Exons2
Model size678
Cds size675
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927964.440729-CDS-E-fasciculatus_F_contig14820:2241..22851622927964.440729-CDS-E-fasciculatus_F_contig14820:2241..2285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14820 2242..2285 +
1695995769.9703655-CDS-E-fasciculatus_F_contig14820:2241..22851695995769.9703655-CDS-E-fasciculatus_F_contig14820:2241..2285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14820 2242..2285 +
1622927964.4619122-CDS-E-fasciculatus_F_contig14820:2578..32091622927964.4619122-CDS-E-fasciculatus_F_contig14820:2578..3209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14820 2579..3209 +
1695995769.9819915-CDS-E-fasciculatus_F_contig14820:2578..32091695995769.9819915-CDS-E-fasciculatus_F_contig14820:2578..3209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14820 2579..3209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14820.3440.1prot_E-fasciculatus_F_contig14820.3440.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14820 2242..3209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14820.3440.1

>prot_E-fasciculatus_F_contig14820.3440.1 ID=prot_E-fasciculatus_F_contig14820.3440.1|Name=mRNA_E-fasciculatus_F_contig14820.3440.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=225bp
PHCCCCRWALARTLREMHSHTQCHLTPLQLQHRRDTAANGTATSTPATIV
SRSTSGRGGILRLGAAAMVVSSLPASYAFGLVAAGSGAAAAVGGRAGAAN
LAARCSSRLSALPTHSGGGGRSALGGFDRPRTLSAFGVLAAGEGQTTTAG
RRISRRSKAGVLPLWGSSLSSSCSIYANGGRSQGGGGGRARRRGLCSASS
DVAAASEGGGGAAVPTAVAEKKPAQ
back to top

mRNA from alignment at E-fasciculatus_F_contig14820:2242..3210+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14820.3440.1 ID=mRNA_E-fasciculatus_F_contig14820.3440.1|Name=mRNA_E-fasciculatus_F_contig14820.3440.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=969bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14820:2242..3210+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACACTGCTGCTGCTGTCGCTGGGCGTTGGCGCGAACCTTGAGGTACGT
TATCCAACAGAGATGGCAAGGCGATGGCGCGGCTCGGAAGTAAGGACTGG
CTAGGGTTGGGTAGGTTTCTGGCTTTCCAGATGATTCGGATTGTGGACGC
GTGGCGGTTGCTAACAAGGGATGTGCGGACAACATGACACTTTGCTCTTC
TGCTGCTTGTAGGACCGGTGGCGTGCTCATGTGTCCGACTCCGCGATGTC
AACTCTGCGTCGCATCTATATCCCCTTGCCATCCACCCCTGTGCTCTTCT
TCGCCTCTCCGGTGCGTGTGTGTGTGTGTGTGTGCAGGGAGATGCACTCT
CACACCCAGTGCCACCTCACGCCGCTGCAACTGCAACATAGACGTGACAC
CGCAGCGAACGGTACTGCTACATCAACACCAGCTACAATCGTTTCTCGCA
GCACAAGTGGGAGGGGAGGCATCCTTCGCCTGGGAGCAGCTGCCATGGTC
GTGTCGTCTCTACCCGCCTCCTACGCCTTCGGCCTAGTAGCGGCCGGCAG
CGGCGCAGCGGCAGCGGTAGGCGGGCGCGCGGGGGCCGCTAACCTCGCAG
CGCGCTGCTCCTCCAGGCTATCGGCGCTGCCAACACACAGCGGCGGCGGC
GGCCGATCAGCGCTTGGCGGCTTCGACCGCCCGCGGACACTGAGTGCCTT
CGGCGTCCTCGCTGCGGGTGAAGGGCAGACGACGACTGCCGGCCGCCGCA
TCAGCAGGAGGAGCAAGGCTGGTGTCCTCCCTTTGTGGGGGAGCTCACTG
AGCAGCAGCTGTTCCATCTACGCTAACGGCGGGAGATCCCAGGGCGGCGG
TGGTGGCCGGGCACGCCGGCGTGGATTGTGCTCGGCATCGAGCGACGTAG
CAGCGGCAAGCGAAGGCGGCGGTGGTGCCGCCGTTCCGACTGCGGTCGCC
GAGAAGAAGCCTGCCCAAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14820:2242..3210+

>mRNA_E-fasciculatus_F_contig14820.3440.1 ID=mRNA_E-fasciculatus_F_contig14820.3440.1|Name=mRNA_E-fasciculatus_F_contig14820.3440.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1350bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14820:2242..3210+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACACTGCTGCTGCTGTCGCTGGGCGTTGGCGCGAACCTTGAGCCACAC
TGCTGCTGCTGTCGCTGGGCGTTGGCGCGAACCTTGAGGGAGATGCACTC
TCACACCCAGTGCCACCTCACGCCGCTGCAACTGCAACATAGACGTGACA
CCGCAGCGAACGGTACTGCTACATCAACACCAGCTACAATCGTTTCTCGC
AGCACAAGTGGGAGGGGAGGCATCCTTCGCCTGGGAGCAGCTGCCATGGT
CGTGTCGTCTCTACCCGCCTCCTACGCCTTCGGCCTAGTAGCGGCCGGCA
GCGGCGCAGCGGCAGCGGTAGGCGGGCGCGCGGGGGCCGCTAACCTCGCA
GCGCGCTGCTCCTCCAGGCTATCGGCGCTGCCAACACACAGCGGCGGCGG
CGGCCGATCAGCGCTTGGCGGCTTCGACCGCCCGCGGACACTGAGTGCCT
TCGGCGTCCTCGCTGCGGGTGAAGGGCAGACGACGACTGCCGGCCGCCGC
ATCAGCAGGAGGAGCAAGGCTGGTGTCCTCCCTTTGTGGGGGAGCTCACT
GAGCAGCAGCTGTTCCATCTACGCTAACGGCGGGAGATCCCAGGGCGGCG
GTGGTGGCCGGGCACGCCGGCGTGGATTGTGCTCGGCATCGAGCGACGTA
GCAGCGGCAAGCGAAGGCGGCGGTGGTGCCGCCGTTCCGACTGCGGTCGC
CGAGAAGAAGCCTGCCCAAGGAGATGCACTCTCACACCCAGTGCCACCTC
ACGCCGCTGCAACTGCAACATAGACGTGACACCGCAGCGAACGGTACTGC
TACATCAACACCAGCTACAATCGTTTCTCGCAGCACAAGTGGGAGGGGAG
GCATCCTTCGCCTGGGAGCAGCTGCCATGGTCGTGTCGTCTCTACCCGCC
TCCTACGCCTTCGGCCTAGTAGCGGCCGGCAGCGGCGCAGCGGCAGCGGT
AGGCGGGCGCGCGGGGGCCGCTAACCTCGCAGCGCGCTGCTCCTCCAGGC
TATCGGCGCTGCCAACACACAGCGGCGGCGGCGGCCGATCAGCGCTTGGC
GGCTTCGACCGCCCGCGGACACTGAGTGCCTTCGGCGTCCTCGCTGCGGG
TGAAGGGCAGACGACGACTGCCGGCCGCCGCATCAGCAGGAGGAGCAAGG
CTGGTGTCCTCCCTTTGTGGGGGAGCTCACTGAGCAGCAGCTGTTCCATC
TACGCTAACGGCGGGAGATCCCAGGGCGGCGGTGGTGGCCGGGCACGCCG
GCGTGGATTGTGCTCGGCATCGAGCGACGTAGCAGCGGCAAGCGAAGGCG
GCGGTGGTGCCGCCGTTCCGACTGCGGTCGCCGAGAAGAAGCCTGCCCAA
back to top