mRNA_E-fasciculatus_F_contig14819.3438.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14819.3438.1
Unique NamemRNA_E-fasciculatus_F_contig14819.3438.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Match: D8LHX5_ECTSI (Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX5_ECTSI)

HSP 1 Score: 443 bits (1139), Expect = 5.150e-153
Identity = 239/278 (85.97%), Postives = 245/278 (88.13%), Query Frame = 1 
Query:    1 LHSATFLGAPPSPAASLSTPRLAKRHRFPRTSIRSTLASSCPXXXXXXXXXXXGSKSWQQQQ--CEASTRAEAIDSVWRSALTAGGGAAVGARALLASPQPASGESEAAGAVEGGEAVASTPRVSSAMEGLERIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPNSIKGCVMLNGAGRFRDREQEALLELQK 828
            +HS   LG+  +P  +L T        FPRTSIRST ASSCP           GSKSWQQQQ  CEASTRAEAIDSVWRSALTAGGGAAVGARALLASPQPASGE+ AAGAVEGGEA A TPRVSSAMEGLERIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPNSIKGCVMLNGAGRFRDREQEALLE+QK
Sbjct:    6 VHSLLLLGSLLTPFEALLT----STGGFPRTSIRSTWASSCPPRTWAASPEDVGSKSWQQQQRQCEASTRAEAIDSVWRSALTAGGGAAVGARALLASPQPASGEAIAAGAVEGGEAAA-TPRVSSAMEGLERIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPNSIKGCVMLNGAGRFRDREQEALLEVQK 278
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Match: A0A6U1NRJ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NRJ5_9STRA)

HSP 1 Score: 179 bits (455), Expect = 3.440e-50
Identity = 87/143 (60.84%), Postives = 106/143 (74.13%), Query Frame = 1 
Query:  394 IPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGAD-----------AVVAGNSLGGFTALAAASHAPNSIKGCVMLNGAGRF 789
            + W+ EGY  WE++GHKI+YV  GD S P LVLIHGFGAS +HWRYNIP L  Q YRV A+DLLGFGLSDKPI++Y+ E WRDQ+ AF+ EVVG             AVVAGNSLGG+TALA ++  P+ +KGC++LN AGRF
Sbjct:  107 LAWKPEGYSFWEFEGHKIHYVASGDSSLPPLVLIHGFGASHFHWRYNIPEL-SQKYRVYAVDLLGFGLSDKPILDYTGELWRDQIAAFIREVVGVGMSEEGEGGVERAVVAGNSLGGYTALATSAVYPSLVKGCILLNAAGRF 248
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Match: A0A7S2A9K4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9K4_TRICV)

HSP 1 Score: 170 bits (431), Expect = 4.280e-49
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 1 
Query:  391 RIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGAD--AVVAGNSLGGFTALAAASHAPNS---------IKGCVMLNGAGRFR 792
            R+PW  +GY +W + G+ INY++ GD +KPAL+LIHGFGAS YH+RYN+PAL +  Y V A DLLGFGL+DKP+ EY+AE W+DQ   F+ +V+G D    VAGNSLGGFTAL AAS A +S         +KGCV+LN AGRFR
Sbjct:   63 RLPWVPDGYATWNWRGNDINYLEMGDPTKPALLLIHGFGASAYHFRYNVPALARD-YHVYAFDLLGFGLTDKPVQEYAAEVWKDQALDFMRDVIGPDRSVTVAGNSLGGFTALYAASEATSSLRADETVPDVKGCVLLNAAGRFR 206
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Match: A0A7S1ZKC8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKC8_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.160e-48
Identity = 84/139 (60.43%), Postives = 102/139 (73.38%), Query Frame = 1 
Query:  391 RIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPNS----IKGCVMLNGAGRFRD 795
            +IPW   GY +W+++ H INYV+ GDKSKPA++LIHGFGAS YH+RYNIP L +  Y V A D+LGFGLS KPI +YSAE WRDQ   F+ EV+G    V GNSLGGFTAL AAS +  S    I GCV+LN AGRF++
Sbjct:   58 KIPWLASGYNTWKWNDHSINYVEMGDKSKPAILLIHGFGASAYHYRYNIPDLARD-YHVYAFDMLGFGLSSKPITDYSAEVWRDQTVDFIEEVIGKTTTVVGNSLGGFTALYAASSSAQSEKSLINGCVLLNAAGRFKN 195
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Match: A0A7S2HYE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYE7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.090e-48
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 1 
Query:  391 RIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAP----NSIKGCVMLNGAGRFRD 795
            RIPW  EGY +W++  H INYV+ GDK+KPAL+LIHGFGAS YH+RYNIP L +  Y V A D+LGFG S KP+++Y    WRDQ   F+ EV+G    V GNSLGGFTAL AAS +     + I GC++LN AGRF+D
Sbjct:   64 RIPWIAEGYNNWKWGDHNINYVEMGDKTKPALLLIHGFGASAYHYRYNIPVLARD-YHVYAFDMLGFGQSSKPLLDYEPNVWRDQTLDFIEEVIGKTTTVVGNSLGGFTALYAASSSAAKTKSLINGCILLNAAGRFKD 201
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Match: A0A6J1J7Q7_CUCMA (pheophytinase, chloroplastic-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1J7Q7_CUCMA)

HSP 1 Score: 171 bits (434), Expect = 1.390e-47
Identity = 88/158 (55.70%), Postives = 112/158 (70.89%), Query Frame = 1 
Query:  322 GAVEGGEAVASTPRVSSAMEGLERIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPNSIKGCVMLNGAGRFRD 795
            G V  G +V  +  V    +G+ER+P++ EGY  W + GHKI+YV +G+   P +VLIHGFGASV+HWRYNIP L K+ Y+V ALDLLGFG SDK IIEY A  WRDQV  F+ E+V   AV+ GNSLGGFTAL +A+  P  ++G V+LN AG+F D
Sbjct:   49 GIVASGVSVMGSSVVMQPAQGIERLPFKPEGYNFWTWRGHKIHYVVQGEG--PPIVLIHGFGASVFHWRYNIPELAKK-YKVYALDLLGFGWSDKAIIEYDAMVWRDQVVDFMKEIVKQPAVLVGNSLGGFTALVSAAGLPEQVRGVVLLNSAGQFGD 203
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Match: A0A0A0KWQ9_CUCSA (AB hydrolase-1 domain-containing protein n=8 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0KWQ9_CUCSA)

HSP 1 Score: 171 bits (433), Expect = 2.000e-47
Identity = 88/158 (55.70%), Postives = 111/158 (70.25%), Query Frame = 1 
Query:  322 GAVEGGEAVASTPRVSSAMEGLERIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPNSIKGCVMLNGAGRFRD 795
            G V  G +V  +  V    +G+ER+P++ EGY  W + GHKI+YV +G+   P +VLIHGFGASV+HWRYNIP L K+ Y+V ALDLLGFG SDK +IEY A  WRDQV  F  EVV   AV+ GNSLGGFTAL +A+  P  ++G V+LN AG+F D
Sbjct:   51 GIVASGVSVMGSSAVIQPAQGMERLPFKPEGYNFWTWRGHKIHYVVQGEG--PPIVLIHGFGASVFHWRYNIPELAKK-YKVYALDLLGFGWSDKALIEYDAMVWRDQVVDFTKEVVKQPAVLVGNSLGGFTALVSAAGLPEQVRGVVLLNSAGQFGD 205
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Match: A0A6J1C5T8_MOMCH (pheophytinase, chloroplastic isoform X1 n=2 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1C5T8_MOMCH)

HSP 1 Score: 169 bits (428), Expect = 1.130e-46
Identity = 89/158 (56.33%), Postives = 110/158 (69.62%), Query Frame = 1 
Query:  322 GAVEGGEAVASTPRVSSAMEGLERIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPNSIKGCVMLNGAGRFRD 795
            G V  G +V  +  V    EG+ER+P++ EGY  W + GHKI+YV +G+   PA+VLIHGFGASV+HWRYNIP L K  ++V ALDLLGFG SDK IIEY A  WRDQV  F+ E+V   AV+ GNSLGGFTAL +A   P  + G V+LN AG+F D
Sbjct:   49 GIVASGVSVMGSSAVIQPAEGMERLPFKPEGYNFWTWRGHKIHYVVQGEG--PAIVLIHGFGASVFHWRYNIPELAKT-HKVYALDLLGFGWSDKAIIEYDAMVWRDQVVDFMKEIVKQPAVLVGNSLGGFTALVSAVGLPEQVCGVVLLNSAGQFGD 203
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Match: A0A5C7HRI5_9ROSI (AB hydrolase-1 domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HRI5_9ROSI)

HSP 1 Score: 169 bits (427), Expect = 1.510e-46
Identity = 85/162 (52.47%), Postives = 111/162 (68.52%), Query Frame = 1 
Query:  322 GAVEGGEAVASTPRVSSAMEGLERIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPNSIKGCVMLNGAGRFRDREQE 807
            G V  G +V  +  V+   +GLER+P++ EGY  W + GHKI+YV +G+   P +VLIHGFGAS +HWRYNIP L K  Y+V A+DLLGFG S+K +IEY A  WRDQV  F+ E+V   AV+ GNSLGGFTAL AA+  P  + G  +LN AG+F D  ++
Sbjct:   47 GIVASGASVIGSSLVTEPAQGLERLPFKPEGYNFWTWQGHKIHYVVQGEG--PPVVLIHGFGASAFHWRYNIPELAKS-YKVYAIDLLGFGWSEKALIEYDAMVWRDQVVDFLKEIVKEPAVLVGNSLGGFTALVAAAELPEQVAGLALLNSAGQFGDANKK 205
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Match: A0A7I8KJ44_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KJ44_SPIIN)

HSP 1 Score: 165 bits (418), Expect = 1.750e-46
Identity = 80/142 (56.34%), Postives = 106/142 (74.65%), Query Frame = 1 
Query:  385 LERIPWREEGYLSWEYDGHKINYVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPNSIKGCVMLNGAGRFRDREQEA 810
            +ER+P++ EGY  W + G KI+YV++G  S P +VLIHGFGAS +HWRYN+P L KQ Y+V ALDL+GFG S+K IIEY A  WRDQV  F+ +VV   AV+ GNSLGGFTAL AAS   ++++G ++LN AG+F ++ Q A
Sbjct:   44 MERLPFKPEGYNFWTWRGRKIHYVEQG--SGPPVVLIHGFGASAFHWRYNVPELAKQ-YKVYALDLIGFGWSEKAIIEYDATVWRDQVADFLKQVVKEPAVLVGNSLGGFTALMAASELSDAVRGVILLNSAGQFENQSQRA 182
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14819.3438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX5_ECTSI5.150e-15385.97Predicted hydrolases or acyltransferases (Alpha/be... [more]
A0A6U1NRJ5_9STRA3.440e-5060.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2A9K4_TRICV4.280e-4957.93Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1ZKC8_9STRA1.160e-4860.43Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2HYE7_9STRA9.090e-4857.55Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A6J1J7Q7_CUCMA1.390e-4755.70pheophytinase, chloroplastic-like n=3 Tax=Cucurbit... [more]
A0A0A0KWQ9_CUCSA2.000e-4755.70AB hydrolase-1 domain-containing protein n=8 Tax=C... [more]
A0A6J1C5T8_MOMCH1.130e-4656.33pheophytinase, chloroplastic isoform X1 n=2 Tax=Mo... [more]
A0A5C7HRI5_9ROSI1.510e-4652.47AB hydrolase-1 domain-containing protein n=1 Tax=A... [more]
A0A7I8KJ44_SPIIN1.750e-4656.34Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14819contigE-fasciculatus_F_contig14819:286..3034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score449.1
Seed ortholog evalue1.5e-123
Seed eggNOG ortholog2880.D8LHX5
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEpoxide hydrolase-like
Ec32 orthologEc-18_000850.1
Exons4
Model size828
Cds size828
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14819.3438.1prot_E-fasciculatus_F_contig14819.3438.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14819 286..3034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927964.072992-CDS-E-fasciculatus_F_contig14819:285..7621622927964.072992-CDS-E-fasciculatus_F_contig14819:285..762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14819 286..762 +
1695995769.7450213-CDS-E-fasciculatus_F_contig14819:285..7621695995769.7450213-CDS-E-fasciculatus_F_contig14819:285..762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14819 286..762 +
1622927964.0942924-CDS-E-fasciculatus_F_contig14819:1682..18501622927964.0942924-CDS-E-fasciculatus_F_contig14819:1682..1850Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14819 1683..1850 +
1695995769.7601748-CDS-E-fasciculatus_F_contig14819:1682..18501695995769.7601748-CDS-E-fasciculatus_F_contig14819:1682..1850Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14819 1683..1850 +
1622927964.1094594-CDS-E-fasciculatus_F_contig14819:2611..27221622927964.1094594-CDS-E-fasciculatus_F_contig14819:2611..2722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14819 2612..2722 +
1695995769.7735457-CDS-E-fasciculatus_F_contig14819:2611..27221695995769.7735457-CDS-E-fasciculatus_F_contig14819:2611..2722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14819 2612..2722 +
1622927964.1243522-CDS-E-fasciculatus_F_contig14819:2962..30341622927964.1243522-CDS-E-fasciculatus_F_contig14819:2962..3034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14819 2963..3034 +
1695995769.786108-CDS-E-fasciculatus_F_contig14819:2962..30341695995769.786108-CDS-E-fasciculatus_F_contig14819:2962..3034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14819 2963..3034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14819.3438.1

>prot_E-fasciculatus_F_contig14819.3438.1 ID=prot_E-fasciculatus_F_contig14819.3438.1|Name=mRNA_E-fasciculatus_F_contig14819.3438.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=276bp
LHSATFLGAPPSPAASLSTPRLAKRHRFPRTSIRSTLASSCPPPTSAASP
EDDGSKSWQQQQCEASTRAEAIDSVWRSALTAGGGAAVGARALLASPQPA
SGESEAAGAVEGGEAVASTPRVSSAMEGLERIPWREEGYLSWEYDGHKIN
YVDEGDKSKPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLS
DKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPNS
IKGCVMLNGAGRFRDREQEALLELQK
back to top

mRNA from alignment at E-fasciculatus_F_contig14819:286..3034+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14819.3438.1 ID=mRNA_E-fasciculatus_F_contig14819.3438.1|Name=mRNA_E-fasciculatus_F_contig14819.3438.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2749bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14819:286..3034+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCACTCTGCAACATTCTTAGGCGCCCCTCCCTCTCCCGCCGCGTCTCT
GTCGACCCCGCGACTCGCGAAACGGCACAGGTTCCCCCGCACTTCCATCC
GCTCGACGTTGGCATCGTCATGCCCGCCCCCGACTTCCGCCGCCTCTCCC
GAGGATGACGGCAGCAAGTCGTGGCAGCAGCAGCAGTGCGAAGCGTCCAC
TCGAGCGGAGGCGATCGATTCCGTCTGGAGGTCGGCCCTCACGGCAGGGG
GCGGGGCGGCCGTGGGGGCACGAGCGTTGCTGGCTTCTCCGCAGCCGGCC
TCCGGCGAATCGGAAGCGGCAGGTGCGGTCGAGGGAGGGGAGGCGGTGGC
GTCGACGCCGCGGGTTTCCTCGGCGATGGAAGGCTTGGAGCGCATCCCCT
GGCGGGAGGAAGGGTACCTCTCGTGGGAGTACGACGGGCACAAGATCAAC
TACGTTGACGAGGGGGACAAGAGTAAGGTAGGCAGCCAAGGGGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGTAAGGTAGGCAGCCAAGGGGAGAGA
GAGAGAGAGAAGAGAGAAGAGAGAGAGAAGGCAGACAGACAGACAGACTA
GAGAGAGAGGGGGAGAGAAAGAAAGAGAGAGAGAGAAAGAAGAGAGGGGG
AGAGGGAGAGAGACACACACACACACAGAGAGAGCGAGAGAGAGAGAGAG
AGACCGAGGGGGGGACAAAGGGAGAGACACAGAGAGAGAAAAATGCTTGT
GCGGAGGGGTAACGGTGTCGTCGTAGCGAAGCAAGCACCCTCTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTGGTACCCGATCTTGCCGGTCGTGA
AAATACAATATACGCCAATGACTAGTACCGTGTGCACCAGGTAATGACAA
GGAGCCATTTTTTTTTGCAATGAGTTGTAAGGAGCCACTTTGGGATTTGA
CGGCCACGACCGTTGTTCTTGCGTCGGTTTTGGTGTTTTGTGGACCGACC
GGTGGTTGTTGGCTTCGACCAGCTCCTCGCTTCGCCCCCTAGCCTTCATC
ACCAGCTGAACCTAACACTACACTGCGCTCTCGGCATAGGTAGTGCCTTG
CTCGTGTAGGCCGCGTTACCCGGAAAACTCCTCCCTGTTTCGCATACCAC
GGACCCCCCTACCCCCCGGCAGGCCCCGTTGACCCTCCTTGCCCCATCTA
CGACCACTGTGGACGCACGGAAAACGCTCCGCCCTTCCCATTGACCGTGT
CCGCACACGGCCTTGTTGATAGCCATGGAGGCGCCGCCAAATACATAGTC
CGGAGCCCCCCCCCCCCCCCCCGACGAGTCACTGCCAAACCCTGTCGCTC
TCATTGCTCACGAGCCATGCACTCATCATCGTTACGCTCGTTGGCAGCCG
GCCTTGGTGCTGATCCATGGGTTCGGCGCAAGCGTGTATCACTGGCGATA
CAACATCCCCGCCCTCGTCAAGCAAGGGTACCGCGTCCTGGCGCTTGACC
TGCTCGGCTTCGGCTTGAGCGACAAGCCCATCATCGAGTACTCCGCGGAA
ACGTGGCGCGATCAGGTATGACCCATGGCTTCTTTGCCGAGTGCAATGAG
GTTTGATCATGACTAATACATCGATTTTTTTATGAATGGCCTATGTTGGA
AAGGTGCAGCTCAGGTAGTGTGTTACGCCATTGCACCATTGAAACGGGTT
ATCACGAAATGGACGAAACTAGAGGGCGCTTTACACGGCCACTGTTTTCT
ATTTCCCCGACAGGTTGCGCGATGAACCAAGCTATTCTAGGCAATCTCGT
ATGTGCATACTACCGTTGTTCGTGAACATGTCGAAAAATTAAAGCCCGCG
ATATTTACTTCAGCAGTAGTAGTCCCAGTACAAGACCATATGAAGGAGGT
CTGCCGCCCTGGACCAAAGGCCGATGGAATTGCGTGACACGTGTGTTTAC
CCTAGTTGTATTTCATCTGTTTCTGCTATTCTTATTTGTGTACATGTAGA
TGGCCTCCTTTCCAAAGGGCCGTTTTATGGAGCAGATATTTTTTGCTTCC
AAATTTCCAATTTCCAAATCCGTAGAACGTTGAACCTCGATTTGCGGCCG
AGGGAAAACAGTGGAAGCTTTGGAAGTTTGGAAACTGCTGCCACCGAAAA
ATTTGGAACGAGTTCATTCCAAAAATGTGGAAATCTGGAAAGTGGGAATA
TGGAAAATTGAAAATTTTGGAAATTTGGAGGCAAAATCGCTGTGCGTAAA
ACGGCGCCAAGAGACAACCCGTGATTCAACGTTTCTCAAGGACTATTTTT
TTGCGGTGGACCCCTTGCTTTGCCAGGTTTGCGCGTTTGTGACGGAGGTA
GTGGGGGCGGACGCGGTGGTGGCGGGGAACTCCCTTGGGGGCTTTACGGC
CTTGGCCGCTGCCTCGCACGCTCCGAACAGCATTAAGGTGGGCCGTTTGG
CGCTTGCTCCAATAGTGGAGTTGCCTTTGGTGATTCATGGCTGATGTTGG
CGGAATGGTGTTGGCTGTTGTTGTTGTCGTTGATGTCACGTGTTGTGTTG
CTACTGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
TCGTCGACGATGCTGGTGCGTGAGCATCGATCCCACAATGTATCTCCCCT
CCCACCCTGGATCCCCTCCAACCACAGGGCTGTGTGATGCTCAACGGCGC
AGGGAGATTCCGCGACCGAGAACAGGAAGCCCTCCTCGAACTCCAGAAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14819:286..3034+

>mRNA_E-fasciculatus_F_contig14819.3438.1 ID=mRNA_E-fasciculatus_F_contig14819.3438.1|Name=mRNA_E-fasciculatus_F_contig14819.3438.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1656bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14819:286..3034+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCACTCTGCAACATTCTTAGGCGCCCCTCCCTCTCCCGCCGCGTCTCT
GTCGACCCCGCGACTCGCGAAACGGCACAGGTTCCCCCGCACTTCCATCC
GCTCGACGTTGGCATCGTCATGCCCGCCCCCGACTTCCGCCGCCTCTCCC
GAGGATGACGGCAGCAAGTCGTGGCAGCAGCAGCAGTGCGAAGCGTCCAC
TCGAGCGGAGGCGATCGATTCCGTCTGGAGGTCGGCCCTCACGGCAGGGG
GCGGGGCGGCCGTGGGGGCACGAGCGTTGCTGGCTTCTCCGCAGCCGGCC
TCCGGCGAATCGGAAGCGGCAGGTGCGGTCGAGGGAGGGGAGGCGGTGGC
GTCGACGCCGCGGGTTTCCTCGGCGATGGAAGGCTTGGAGCGCATCCCCT
GGCGGGAGGAAGGGTACCTCTCGTGGGAGTACGACGGGCACAAGATCAAC
TACGTTGACGAGGGGGACAAGAGTAAGCTGCACTCTGCAACATTCTTAGG
CGCCCCTCCCTCTCCCGCCGCGTCTCTGTCGACCCCGCGACTCGCGAAAC
GGCACAGGTTCCCCCGCACTTCCATCCGCTCGACGTTGGCATCGTCATGC
CCGCCCCCGACTTCCGCCGCCTCTCCCGAGGATGACGGCAGCAAGTCGTG
GCAGCAGCAGCAGTGCGAAGCGTCCACTCGAGCGGAGGCGATCGATTCCG
TCTGGAGGTCGGCCCTCACGGCAGGGGGCGGGGCGGCCGTGGGGGCACGA
GCGTTGCTGGCTTCTCCGCAGCCGGCCTCCGGCGAATCGGAAGCGGCAGG
TGCGGTCGAGGGAGGGGAGGCGGTGGCGTCGACGCCGCGGGTTTCCTCGG
CGATGGAAGGCTTGGAGCGCATCCCCTGGCGGGAGGAAGGGTACCTCTCG
TGGGAGTACGACGGGCACAAGATCAACTACGTTGACGAGGGGGACAAGAG
TAAGCCGGCCTTGGTGCTGATCCATGGGTTCGGCGCAAGCGTGTATCACT
GGCGATACAACATCCCCGCCCTCGTCAAGCAAGGGTACCGCGTCCTGGCG
CTTGACCTGCTCGGCTTCGGCTTGAGCGACAAGCCCATCATCGAGTACTC
CGCGGAAACGTGGCGCGATCAGCCGGCCTTGGTGCTGATCCATGGGTTCG
GCGCAAGCGTGTATCACTGGCGATACAACATCCCCGCCCTCGTCAAGCAA
GGGTACCGCGTCCTGGCGCTTGACCTGCTCGGCTTCGGCTTGAGCGACAA
GCCCATCATCGAGTACTCCGCGGAAACGTGGCGCGATCAGGTTTGCGCGT
TTGTGACGGAGGTAGTGGGGGCGGACGCGGTGGTGGCGGGGAACTCCCTT
GGGGGCTTTACGGCCTTGGCCGCTGCCTCGCACGCTCCGAACAGCATTAA
GGTTTGCGCGTTTGTGACGGAGGTAGTGGGGGCGGACGCGGTGGTGGCGG
GGAACTCCCTTGGGGGCTTTACGGCCTTGGCCGCTGCCTCGCACGCTCCG
AACAGCATTAAGGGCTGTGTGATGCTCAACGGCGCAGGGAGATTCCGCGA
CCGAGAACAGGAAGCCCTCCTCGAACTCCAGAAGGGCTGTGTGATGCTCA
ACGGCGCAGGGAGATTCCGCGACCGAGAACAGGAAGCCCTCCTCGAACTC
CAGAAG
back to top