mRNA_E-fasciculatus_F_contig14814.3437.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14814.3437.1 vs. uniprot
Match: D8LLR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR2_ECTSI) HSP 1 Score: 375 bits (964), Expect = 1.140e-116 Identity = 206/219 (94.06%), Postives = 208/219 (94.98%), Query Frame = 1
Query: 1 NCRSPDIGVASSDNSRNADLSRNGLPRSNSRRSGPMAGLLAPGPSSIDASGYGQTGXXXXXXXXXXVLSSPRRSQRVTRSHTGSGDPKWMARVGDGMRSKWYKLLGGETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMWGPDHVDTSESAIAEGVDA 657
N RSPDIG ASSD RN DL RNGLPR NSRRSGPMAGL+APGPSSID SGYGQTG XXXXXXXX VLSSPRRSQRVTRSHTGSGD KWMARVGDGMRSKWYKLLGGETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMWGPDHVDTS+SAIAEGVDA
Sbjct: 432 NSRSPDIG-ASSDIPRNPDLMRNGLPRPNSRRSGPMAGLMAPGPSSIDGSGYGQTGGXXXXXXXX-VLSSPRRSQRVTRSHTGSGDAKWMARVGDGMRSKWYKLLGGETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMWGPDHVDTSDSAIAEGVDA 648
BLAST of mRNA_E-fasciculatus_F_contig14814.3437.1 vs. uniprot
Match: A0A6H5JEL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL9_9PHAE) HSP 1 Score: 372 bits (955), Expect = 2.130e-115 Identity = 204/219 (93.15%), Postives = 209/219 (95.43%), Query Frame = 1
Query: 1 NCRSPDIGVASSDNSRNADLSRNGLPRSNSRRSGPMAGLLAPGPSSIDASGYGQTGXXXXXXXXXXVLSSPRRSQRVTRSHTGSGDPKWMARVGDGMRSKWYKLLGGETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMWGPDHVDTSESAIAEGVDA 657
N RSPDIG ASSD +R+ DL RNGLPRSNSRRSGPMAGL+APGPSSID SGYGQTG XXXXXXXX VLSSPRRS RVTRSHTGSGD KWMARVGDGMRSKWYKL+GGETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMWGPDHVDTS+SAIAEGVDA
Sbjct: 465 NSRSPDIG-ASSDIARDPDLMRNGLPRSNSRRSGPMAGLVAPGPSSIDGSGYGQTGGXXXXXXXX-VLSSPRRSLRVTRSHTGSGDAKWMARVGDGMRSKWYKLVGGETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMWGPDHVDTSDSAIAEGVDA 681
BLAST of mRNA_E-fasciculatus_F_contig14814.3437.1 vs. uniprot
Match: A0A7R9YG02_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG02_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 6.700e-18 Identity = 48/125 (38.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 229 VTRSHTGSGDPKWMARVGDGMRSKWYKLLGGETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMW 603
+T+S G + ++ V + +++ LLGG +R+R W++K TS + PK KY+ +I+ A+WE+EL + +FT L RPL VA KAL+ L+K++Q GPPHVL+E + P +E + + W
Sbjct: 394 LTQSKEEWGQDRRISYVTEQVQAGVLGLLGGNKERQR-WIIKATSLKAGAPKAKYIRRIIIAIWEEELHLPVLFTYLGLRPLRNHDTVAFKALVLLLKIIQNGPPHVLTEMASLIPNIEALCRHW 517
BLAST of mRNA_E-fasciculatus_F_contig14814.3437.1 vs. uniprot
Match: A0A7S1XKW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKW2_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 5.370e-17 Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 1
Query: 199 VLSSPRRSQRVTRSH-TGSGDPKW-----MARVGDGMRSKWYKLLGGETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMW 603
L+ RRS+ + S +G G W M+ V + +++ LLGG+ +R+R W +K TS PKPKY+ +IV A+WE+EL + +FT + RPL + VVA+K L+ L+KV+ GP VL+E + P +E + + W
Sbjct: 184 ALTQARRSRIDSASSASGGGARPWGEERRMSLVSESVQTGVLGLLGGDKERQR-WTIKATSIKPGPPKPKYIRRIVIAIWEEELPLPVLFTFIGLRPLQKKDVVAVKTLLLLLKVMHGGPQFVLTEMASLVPNIEALCKHW 323
BLAST of mRNA_E-fasciculatus_F_contig14814.3437.1 vs. uniprot
Match: W7TZ73_9STRA (Leucine-rich repeat-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ73_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.670e-15 Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 1
Query: 319 GETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMW 603
GET K+ WV+K TS+ + PK KYV K+V A+WE + + F +L RP+ +P+VA+KALIT +KVLQQGP + L+ CT + D+G+ W
Sbjct: 686 GETG-KKSWVVKATSKEAGQPKAKYVRKLVLAVWEGGMPASTFFLVLSQRPVFTNPIVALKALITTLKVLQQGPRNFLATCTPCMGVLADMGRRW 779
BLAST of mRNA_E-fasciculatus_F_contig14814.3437.1 vs. uniprot
Match: A0A7S1CG23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG23_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 5.190e-13 Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 283 DGMRSKWYKLLGGETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMW 603
+ ++ + ++LLGG + KR WV++ TS++ PKPKYV +++ WE V L RPL+ PVVA+KAL++++KVLQ GPP ++ P V+ + W
Sbjct: 213 ESVQGRVFQLLGGASN-KRRWVMRLTSRDPGVPKPKYVRRLILDAWESRSLATLVHNLP-SRPLTTHPVVALKALVSILKVLQLGPPEATAQAAELLPIVDAMAHAW 317
BLAST of mRNA_E-fasciculatus_F_contig14814.3437.1 vs. uniprot
Match: A0A388M252_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M252_CHABU) HSP 1 Score: 61.2 bits (147), Expect = 3.100e-7 Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1
Query: 298 KWYKLLGGETQRKRLWVLKTTSQNSTGPKPKYVGKIVAALWEKE-LTMDSVFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSECTTYAPTVEDIGQMWGPDHV---DTSESAIAEG 648
+WY+ KR+ + K T++ PK KY+ K+V A W+ ++F++L RP+ SP+VA+KALI + K++QQG P L C ++D+ W V +TS SA G
Sbjct: 440 EWYE--------KRVALAKATNKTEAPPKLKYLRKLVLASWKHNGAGAAAIFSMLSKRPVLLSPMVALKALIIIHKLMQQGSPDSLFACHGKISLLQDVAGTWSTSGVASGNTSASAATTG 552
BLAST of mRNA_E-fasciculatus_F_contig14814.3437.1 vs. uniprot
Match: A0A176VFP5_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VFP5_MARPO) HSP 1 Score: 55.8 bits (133), Expect = 1.930e-5 Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 337 RLWVLKTTSQNSTGPKPKYVGKIVAALWEKELTMDS-VFTLLLDRPLSESPVVAMKALITLMKVLQQGPPHVLSEC 561
R +LK TS+ PK KY+ K+V + W+ + + +F +L RPL SP VA+KAL T+ K++QQGP + C
Sbjct: 241 RTLILKATSKAEVPPKSKYLRKLVLSSWKHNGSGGAAIFNILGKRPLQSSPFVALKALATIHKLMQQGPADCRAAC 316 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14814.3437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14814.3437.1 >prot_E-fasciculatus_F_contig14814.3437.1 ID=prot_E-fasciculatus_F_contig14814.3437.1|Name=mRNA_E-fasciculatus_F_contig14814.3437.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=226bp NCRSPDIGVASSDNSRNADLSRNGLPRSNSRRSGPMAGLLAPGPSSIDASback to top mRNA from alignment at E-fasciculatus_F_contig14814:132..2366+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14814.3437.1 ID=mRNA_E-fasciculatus_F_contig14814.3437.1|Name=mRNA_E-fasciculatus_F_contig14814.3437.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2235bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14814:132..2366+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14814:132..2366+ >mRNA_E-fasciculatus_F_contig14814.3437.1 ID=mRNA_E-fasciculatus_F_contig14814.3437.1|Name=mRNA_E-fasciculatus_F_contig14814.3437.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14814:132..2366+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |