mRNA_E-fasciculatus_F_contig14804.3431.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14804.3431.1
Unique NamemRNA_E-fasciculatus_F_contig14804.3431.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14804.3431.1 vs. uniprot
Match: A0A6H5L8A9_9PHAE (HTTM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8A9_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.300e-31
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 1
Query:   10 SRQVLRLVLDPDMLLQFAKKTAEINAAAGHGQQQRGKPPRPTPSHVDAWKSINGRPFTRWIDPSVDV 210
            ++QVLRLVLDPDMLLQFAKKTAEINAAA HGQQQ+GKP  P  SHVDAWKSINGRPFTRWIDPSVDV
Sbjct:  586 AQQVLRLVLDPDMLLQFAKKTAEINAAAEHGQQQKGKPQLPAASHVDAWKSINGRPFTRWIDPSVDV 652          
BLAST of mRNA_E-fasciculatus_F_contig14804.3431.1 vs. uniprot
Match: A0A8J9VA64_BRALA (GGCX protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9VA64_BRALA)

HSP 1 Score: 56.6 bits (135), Expect = 1.160e-7
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 RVPSRQVLRLVLDPDMLLQFAKKTAEINAAAGHGQQQRGKPPRPTPSHVDAWKSINGRPFTRWIDPSVDV 210
            ++ +RQ+ R++ DP+++LQ+A+     +   GH Q        P    +D W+S+N RPF RW+DPSVD+
Sbjct:  432 QINARQMKRMLTDPELILQYAQ-----HLGRGHLQTTGS----PASVRLDMWRSLNNRPFQRWVDPSVDL 492          
BLAST of mRNA_E-fasciculatus_F_contig14804.3431.1 vs. uniprot
Match: A0A6P4YJU5_BRABE (vitamin K-dependent gamma-carboxylase-like isoform X1 n=2 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YJU5_BRABE)

HSP 1 Score: 56.6 bits (135), Expect = 1.160e-7
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   10 SRQVLRLVLDPDMLLQFAKKTAEINAAAGHGQQQRGKPPRPTPSHVDAWKSINGRPFTRWIDPSVDV 210
            +RQ+ R++ DP+M+LQ+A+           G++       P    +D W+S+N RPF RW+DPSVD+
Sbjct:  463 ARQMKRMITDPEMILQYAQYL---------GREHMQTTGSPASVRLDMWRSLNNRPFQRWVDPSVDL 520          
BLAST of mRNA_E-fasciculatus_F_contig14804.3431.1 vs. uniprot
Match: C3YG73_BRAFL (HTTM domain-containing protein n=3 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YG73_BRAFL)

HSP 1 Score: 56.2 bits (134), Expect = 1.590e-7
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 RVPSRQVLRLVLDPDMLLQFAKKTAEINAAAGHGQQQRGKPPRPTPSHVDAWKSINGRPFTRWIDPSVDV 210
            ++ +RQ+ R++ DP+++LQ+A+           G++       P    +D W+S+N RPF RW+DPSVD+
Sbjct:  428 QINARQMKRMITDPELILQYAQHL---------GREHLETTGSPASVRLDMWRSLNNRPFQRWVDPSVDL 488          
BLAST of mRNA_E-fasciculatus_F_contig14804.3431.1 vs. uniprot
Match: A0A7S0H7A6_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H7A6_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 1.040e-6
Identity = 29/73 (39.73%), Postives = 37/73 (50.68%), Query Frame = 1
Query:    1 RVPSRQVLRLVLDPDMLLQFAKKTA---EINAAAGHGQQQRGKPPRPTPSHVDAWKSINGRPFTRWIDPSVDV 210
            R+  RQ+ R   DPD  LQ A+       +  A  HGQ            + D WKS+NGRPF RWIDP+ D+
Sbjct:  497 RIKPRQLRRCFKDPDCHLQLAQWPGIPEMVRGALRHGQ-----------IYFDVWKSLNGRPFQRWIDPTFDL 558          
BLAST of mRNA_E-fasciculatus_F_contig14804.3431.1 vs. uniprot
Match: A0A1S3JV01_LINUN (Vitamin K-dependent gamma-carboxylase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JV01_LINUN)

HSP 1 Score: 53.1 bits (126), Expect = 1.950e-6
Identity = 27/74 (36.49%), Postives = 39/74 (52.70%), Query Frame = 1
Query:    1 RVPSRQVLRLVLDPDMLLQFAKKTAEINAAAGHGQQQRGKPPRPTPS----HVDAWKSINGRPFTRWIDPSVDV 210
            R+  RQV  ++ D +++LQ             H +Q+ GK     P     H+D W+S+NGRPF RWIDP  D+
Sbjct:  475 RLTDRQVKMMLTDAELILQLVD----------HIKQRPGKDTNLKPGTFGVHIDMWRSLNGRPFQRWIDPETDL 538          
BLAST of mRNA_E-fasciculatus_F_contig14804.3431.1 vs. uniprot
Match: UPI0014259B78 (vitamin K-dependent gamma-carboxylase-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259B78)

HSP 1 Score: 50.4 bits (119), Expect = 1.740e-5
Identity = 24/64 (37.50%), Postives = 32/64 (50.00%), Query Frame = 1
Query:   13 RQVLRLVLDPDMLLQFAKKTAEINAAAGHGQQQRGKPPRPTPSHVDAWKSINGRPFTRWIDPSV 204
            RQ  R++ D D++LQF               +  G P  P     + WKS+NGRPF RW+DP V
Sbjct:  448 RQAKRMITDLDLVLQFVNHWTT---------KSPGSPEAPVSIKAELWKSLNGRPFQRWVDPEV 502          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14804.3431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L8A9_9PHAE1.300e-3188.06HTTM domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A8J9VA64_BRALA1.160e-737.14GGCX protein n=1 Tax=Branchiostoma lanceolatum Tax... [more]
A0A6P4YJU5_BRABE1.160e-737.31vitamin K-dependent gamma-carboxylase-like isoform... [more]
C3YG73_BRAFL1.590e-734.29HTTM domain-containing protein n=3 Tax=Branchiosto... [more]
A0A7S0H7A6_9EUKA1.040e-639.73Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A1S3JV01_LINUN1.950e-636.49Vitamin K-dependent gamma-carboxylase n=1 Tax=Ling... [more]
UPI0014259B781.740e-537.50vitamin K-dependent gamma-carboxylase-like n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14804contigE-fasciculatus_F_contig14804:262..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927963.5350661-CDS-E-fasciculatus_F_contig14804:261..4711622927963.5350661-CDS-E-fasciculatus_F_contig14804:261..471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14804 262..471 +
1695995769.5061727-CDS-E-fasciculatus_F_contig14804:261..4711695995769.5061727-CDS-E-fasciculatus_F_contig14804:261..471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14804 262..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14804.3431.1prot_E-fasciculatus_F_contig14804.3431.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14804 262..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14804.3431.1

>prot_E-fasciculatus_F_contig14804.3431.1 ID=prot_E-fasciculatus_F_contig14804.3431.1|Name=mRNA_E-fasciculatus_F_contig14804.3431.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=70bp
RVPSRQVLRLVLDPDMLLQFAKKTAEINAAAGHGQQQRGKPPRPTPSHVD
AWKSINGRPFTRWIDPSVDV
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mRNA from alignment at E-fasciculatus_F_contig14804:262..471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14804.3431.1 ID=mRNA_E-fasciculatus_F_contig14804.3431.1|Name=mRNA_E-fasciculatus_F_contig14804.3431.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=210bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14804:262..471+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCGTACCATCGCGCCAGGTGCTCCGCTTGGTGCTCGACCCAGATATGCT CCTGCAGTTCGCCAAGAAGACGGCCGAGATCAACGCGGCAGCCGGCCATG GCCAACAGCAGAGAGGGAAACCCCCACGCCCCACCCCCTCTCACGTCGAT GCGTGGAAGTCGATCAACGGCAGGCCCTTCACGCGCTGGATCGACCCTTC GGTGGACGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14804:262..471+

>mRNA_E-fasciculatus_F_contig14804.3431.1 ID=mRNA_E-fasciculatus_F_contig14804.3431.1|Name=mRNA_E-fasciculatus_F_contig14804.3431.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=420bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14804:262..471+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCGTACCATCGCGCCAGGTGCTCCGCTTGGTGCTCGACCCAGATATGCT
CCTGCAGTTCGCCAAGAAGACGGCCGAGATCAACGCGGCAGCCGGCCATG
GCCAACAGCAGAGAGGGAAACCCCCACGCCCCACCCCCTCTCACGTCGAT
GCGTGGAAGTCGATCAACGGCAGGCCCTTCACGCGCTGGATCGACCCTTC
GGTGGACGTGCGCGTACCATCGCGCCAGGTGCTCCGCTTGGTGCTCGACC
CAGATATGCTCCTGCAGTTCGCCAAGAAGACGGCCGAGATCAACGCGGCA
GCCGGCCATGGCCAACAGCAGAGAGGGAAACCCCCACGCCCCACCCCCTC
TCACGTCGATGCGTGGAAGTCGATCAACGGCAGGCCCTTCACGCGCTGGA
TCGACCCTTCGGTGGACGTG
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