mRNA_E-fasciculatus_F_contig148.3426.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig148.3426.1
Unique NamemRNA_E-fasciculatus_F_contig148.3426.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Match: D7G7G8_ECTSI (Similar to vacuolar protein sorting 24 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7G8_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 2.520e-116
Identity = 214/219 (97.72%), Postives = 216/219 (98.63%), Query Frame = 1 
Query:    1 MRRLLHRKVDPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAXXXXAEEEEKANAMKARLESL 657
            MRRLLHRKVDPEEQAKEWRR+INHE   VRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGL+LTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAXXXXAEEEEKANAMKARLESL
Sbjct:    1 MRRLLHRKVDPEEQAKEWRRSINHE---VRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLSLTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAXXXXAEEEEKANAMKARLESL 216
[Close]
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Match: A0A835ZDQ5_9STRA (Vacuolar protein-like protein sorting 24 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDQ5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.610e-47
Identity = 101/186 (54.30%), Postives = 135/186 (72.58%), Query Frame = 1 
Query:   19 RKVDPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE 576
            +KVDP+EQAKEW R +N E   +R +ERQI S++  E K+ +DIK +AKEG+RNE+A+R+LA+++V  R  K RM+EGK Q+HSVQMQL+NQ+AL+KVTG + KSTE+M  +G LV IPELQ  M  LA EMERAGL EE++ D +  T     D + D EV+KV+AEIT   + GA +AP   P+
Sbjct:    1 KKVDPQEQAKEWNRTMNRE---IRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTNED-EVDQEVEKVLAEITATTMAGAEEAPVGEPQ 182
[Close]
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Match: A0A8J2S9J1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J1_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.800e-35
Identity = 88/215 (40.93%), Postives = 141/215 (65.58%), Query Frame = 1 
Query:   13 LHRKVDPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAXXXXAEEEEKANAMKARLESL 657
            L +  DP+E+ K+WRR +  E    RA++R+I  LE+ E+K + + +   KEG ++  A +++A+E+V +R A+NRM   KAQ++SV MQLQ Q A+++  G +KKSTE+M  +  LVK+PELQ+ M ++  EMER+GL+EEVV D L   D + ++ + + +V+KV+ E+   + +G  DAP  +PE  AV      AE ++  + MKARL++L
Sbjct:    9 LQKAKDPQEEMKKWRRELRKEQ---RAMDREISKLEQMERKSRDECRKYGKEGRQD--ACKIVAREIVRTRAARNRMLMAKAQINSVNMQLQTQAAMVRAAGCMKKSTEVMRCMNKLVKLPELQKTMMEMQREMERSGLIEEVVGDALDELDGDDVEEETELQVNKVVEELAGDLFKGQTDAPETLPEQQAV----EPAEADDDLDTMKARLQAL 214
[Close]
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Match: A0A2R5GMG8_9STRA (Charged multivesicular body protein 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMG8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.270e-34
Identity = 88/183 (48.09%), Postives = 129/183 (70.49%), Query Frame = 1 
Query:   28 DPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALT-DAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVP 573
            DP E  KEW RN+  E    R L+RQ+  +ER E K+Q+DIK +AK+G     AIR LA  LV S+ AKNR++  KA ++SV +QL++Q A +++  V++ ST++MA++  LVK+PE+ +NM ++A EMERAGL+EE++ D +  T D EG+D +ADA VD++IAE+T G+L+ A  APT  P
Sbjct:   21 DPRELVKEWTRNLRREQ---RMLDRQLRQIEREELKMQRDIKMLAKKGEMA--AIRPLAHSLVQSKKAKNRINVTKAHMNSVNLQLRHQAAQMRMAQVMQSSTKVMAAMNSLVKMPEVAKNMQEMAMEMERAGLIEEIMDDAMESTFDDEGMDGEADAAVDQIIAELTTGLLDKAPAAPTTAP 198
[Close]
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Match: A0A507DEA3_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DEA3_9FUNG)

HSP 1 Score: 136 bits (343), Expect = 8.640e-33
Identity = 78/177 (44.07%), Postives = 124/177 (70.06%), Query Frame = 1 
Query:   10 LLHRKVDPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVL 540
            L+ +K+ PEEQ K+WR ++  +    R LER+I S++  E KV++DIK  AK G +   +   LAKE+V +R AK RM+  KAQ++S+ MQLQ Q+A+IKV G I+KS E+M  +  L+K+PE+ +NM ++  EM +AG++EE++ D + + D EG+D +++  VDKV+ E+T+G+L
Sbjct:    8 LVGKKLSPEEQVKKWRSDMRQQE---RELERRIRSIDSEEAKVKRDIKAAAKRGDKT--SCMTLAKEVVNARKAKERMYTSKAQMNSIIMQLQQQVAMIKVAGNIQKSAELMKLVNKLIKVPEMSKNMQEMQREMMKAGIIEEMMNDAIDMADDEGIDDESEEIVDKVLLELTDGLL 179
[Close]
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Match: A0A433PQA2_9FUNG (Vacuolar sorting protein VPS24 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PQA2_9FUNG)

HSP 1 Score: 136 bits (342), Expect = 1.390e-32
Identity = 91/215 (42.33%), Postives = 144/215 (66.98%), Query Frame = 1 
Query:   22 KVDPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLE--GAVDAPTAVPE-PAAVAAXXXXAEEEEKANAMKARLESL 657
            K  PEE  K+WR++I  +    RALERQ+  +E  E KV+K +K +AK G  ++KA   LAKELV S+  K R++  KAQL+S+ MQL NQ++ +K+ GV++KS+EIM  +  +V++PE+ + M +++ EM +AG+++E++ D +   D E L+A+AD EV+KV+ ++T+G+L   G V AP  VPE PA+        EEE + + M+ RL++L
Sbjct:   14 KKTPEELVKKWRQDIRAQE---RALERQLRGIEGEELKVKKSLKALAKRG--DKKACMTLAKELVRSKRHKERLYTSKAQLNSIVMQLNNQLSTLKIAGVLQKSSEIMKLVNQVVRLPEISQAMQEMSMEMMKAGIMDEMIQDTMESLDDEDLEAEADEEVNKVLFQVTDGLLGEVGQVGAPLEVPELPAS-----EEEEEEPELDIMQKRLQAL 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Match: UPI00145575B8 (charged multivesicular body protein 3-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145575B8)

HSP 1 Score: 135 bits (340), Expect = 2.440e-32
Identity = 92/214 (42.99%), Postives = 139/214 (64.95%), Query Frame = 1 
Query:   28 DPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE--PAAVAAXXXXAEEE--EKANAMKARLESL 657
            DP+EQ +EW RN+  E+   R L+RQI S+ER E KV++ IK  AK+G ++    ++LAKE+V SR AK R+H  KAQL+SV MQ++NQ+A+I+++G + KSTE+M  +  L K+ E+Q  M +++ EM +AG++EE++ D     + + L+  +  EV+K++ EIT   L    DAP AV +  PA   A     EEE  E  + M+ARLE+L
Sbjct:   11 DPKEQVQEWTRNLTKES---RKLDRQIRSIEREELKVKRSIKEAAKKGQKD--VCKILAKEIVNSRKAKTRIHTSKAQLNSVSMQMKNQLAVIRMSGALSKSTEVMKYMQQLCKVSEVQATMMEMSKEMMKAGIIEEMLEDTFESMEDDDLEEASSEEVEKILFEITANHLS---DAPKAVKDDLPAGATAVVSDEEEEVAEDISEMQARLEAL 216
[Close]
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Match: A0A1Y2CQ12_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CQ12_9FUNG)

HSP 1 Score: 134 bits (336), Expect = 3.260e-32
Identity = 82/189 (43.39%), Postives = 130/189 (68.78%), Query Frame = 1 
Query:   13 LHRKVDPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKA-IRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVL--EGAVDAPTAV 570
            + +++ PEEQ K+W+ +I  +    R L++QI  +E AE KV+KDIK  AK   RN+ A  RLLAKE+V SR A++R+H  KAQL+S+ MQLQ Q+A+ KV G +K+ST+IM  + +L+K+PE+   M +++ EM +AG++ E++ D +   D EG++ +AD EV+ ++ ++T+G+L   G V AP  V
Sbjct:    1 MFKRLTPEEQVKKWKASIRGQE---RELDKQIRGIETAEAKVKKDIKAAAK---RNDAASCRLLAKEIVRSRKARDRLHTSKAQLNSLSMQLQQQLAVAKVAGSLKQSTDIMKIVNNLIKLPEIHNTMQEMSKEMMKAGIIGEMMEDAIDTLDEEGIEEEADKEVENILFDLTDGLLGQAGQVGAPLEV 183
[Close]
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Match: A0A4P9YWD9_9FUNG (Snf7-domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YWD9_9FUNG)

HSP 1 Score: 134 bits (337), Expect = 6.500e-32
Identity = 95/222 (42.79%), Postives = 140/222 (63.06%), Query Frame = 1 
Query:    7 RLLHRKVDPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVL--EGAVDAP---TAVPEPAAVAAXXXXAEEEEKANAMKARLESL 657
            R + R   PEE  +EWR++I  +    R LERQI S+E  E KV++ IK  A  G ++  + R+LAKELV SR  K R+H  KA L S+ MQLQ Q+A++K++G +K+STE+M ++  LV++PEL   M  ++ EM +AG++ E++ D + + D E L+ +AD EV+KV+ E+T G L   GA+ A    TA P  AA A      E E +  +M+ARLE+L
Sbjct:    6 RFIFRTRKPEELVREWRQSIRAQE---RQLERQIRSIETEELKVKRTIKQAA--GRKDTASCRMLAKELVRSRRQKTRLHTNKAHLSSINMQLQQQLAMLKMSGTLKQSTEVMRAVNRLVRVPELSAQMQAMSMEMMKAGVISEMMEDTMDMLDDEELEDEADEEVEKVLFEVTNGKLGEAGAMPAEHIATATPAEAAAAVE----EGEPELESMQARLEAL 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Match: UPI000719DD2A (charged multivesicular body protein 3-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DD2A)

HSP 1 Score: 134 bits (336), Expect = 8.370e-32
Identity = 95/214 (44.39%), Postives = 139/214 (64.95%), Query Frame = 1 
Query:   28 DPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGL-ALTDAEGLDAQADAEVDKVIAEITEGVLEGA---VDAPTAVPEPAAVAAXXXXAEEEEKANAMKARLESL 657
            DP+EQ  EW RN+  E    R L+RQI  ++R E+K ++ +K  AK+G ++   I  LAKELV SR A NR++  KAQ++SV M +++Q+A+IK++G I+KSTE+M S+  LVK+PE+   M  ++ EM +AG++EE++ D + +L D E L+ +A  EVDK++ E+T G L  A   V     V EP A AA    AE E+    MKARLE+L
Sbjct:   11 DPKEQVDEWTRNLRKEG---RQLDRQIRGIQREEQKAKRSLKEAAKKGDKDVCVI--LAKELVRSRKAVNRIYASKAQINSVVMSMKSQLAIIKISGTIEKSTEVMNSMQALVKLPEINATMQAMSKEMMKAGIIEEMLEDTMESLDDQEELEEEAQEEVDKILFELTAGALGNAPAKVTDSLPVLEPQAAAAE---AEGEDDVEDMKARLEAL 216
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig148.3426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7G8_ECTSI2.520e-11697.72Similar to vacuolar protein sorting 24 homolog n=2... [more]
A0A835ZDQ5_9STRA6.610e-4754.30Vacuolar protein-like protein sorting 24 (Fragment... [more]
A0A8J2S9J1_9STRA1.800e-3540.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2R5GMG8_9STRA2.270e-3448.09Charged multivesicular body protein 3 n=1 Tax=Hond... [more]
A0A507DEA3_9FUNG8.640e-3344.07Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A433PQA2_9FUNG1.390e-3242.33Vacuolar sorting protein VPS24 n=1 Tax=Endogone sp... [more]
UPI00145575B82.440e-3242.99charged multivesicular body protein 3-like n=1 Tax... [more]
A0A1Y2CQ12_9FUNG3.260e-3243.39Uncharacterized protein (Fragment) n=1 Tax=Rhizocl... [more]
A0A4P9YWD9_9FUNG6.500e-3242.79Snf7-domain-containing protein n=1 Tax=Syncephalis... [more]
UPI000719DD2A8.370e-3244.39charged multivesicular body protein 3-like n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig148contigE-fasciculatus_F_contig148:15193..21486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.2
Seed ortholog evalue2.6e-99
Seed eggNOG ortholog2880.D7G7G8
Preferred nameCHMP3
KEGG koko:K12193
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
GOsGO:0000815,GO:0000920,GO:0002020,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006900,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0008333,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019538,GO:0019899,GO:0019941,GO:0022411,GO:0022607,GO:0030163,GO:0030496,GO:0031090,GO:0031210,GO:0031410,GO:0031982,GO:0032386,GO:0032465,GO:0032467,GO:0032509,GO:0032510,GO:0032511,GO:0032535,GO:0032879,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0034622,GO:0035091,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040013,GO:0040017,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043328,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0045787,GO:0046605,GO:0046618,GO:0046755,GO:0046907,GO:0046983,GO:0048284,GO:0048518,GO:0048519,GO:0048522,GO:0048524,GO:0048525,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0050997,GO:0051036,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051258,GO:0051259,GO:0051291,GO:0051301,GO:0051302,GO:0051493,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051781,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0061763,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070405,GO:0070507,GO:0070676,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090066,GO:0090068,GO:0090174,GO:0097352,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1901981,GO:1902186,GO:1902187,GO:1902188,GO:1902936,GO:1903649,GO:1903900,GO:1903901,GO:1903902,GO:1904669,GO:1990381,GO:2000641
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3229@2759
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSnf7 family
Ec32 orthologEc-02_000210.1
Exons6
Model size2832
Cds size660
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927962.647142-UTR-E-fasciculatus_F_contig148:15192..173641622927962.647142-UTR-E-fasciculatus_F_contig148:15192..17364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig148 15193..17364 -
1695995769.093792-UTR-E-fasciculatus_F_contig148:15192..173641695995769.093792-UTR-E-fasciculatus_F_contig148:15192..17364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig148 15193..17364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927962.6648998-CDS-E-fasciculatus_F_contig148:17364..175561622927962.6648998-CDS-E-fasciculatus_F_contig148:17364..17556Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 17365..17556 -
1695995769.107607-CDS-E-fasciculatus_F_contig148:17364..175561695995769.107607-CDS-E-fasciculatus_F_contig148:17364..17556Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 17365..17556 -
1622927962.683358-CDS-E-fasciculatus_F_contig148:17954..180631622927962.683358-CDS-E-fasciculatus_F_contig148:17954..18063Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 17955..18063 -
1695995769.1187494-CDS-E-fasciculatus_F_contig148:17954..180631695995769.1187494-CDS-E-fasciculatus_F_contig148:17954..18063Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 17955..18063 -
1622927962.72295-CDS-E-fasciculatus_F_contig148:18839..189001622927962.72295-CDS-E-fasciculatus_F_contig148:18839..18900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 18840..18900 -
1695995769.1296306-CDS-E-fasciculatus_F_contig148:18839..189001695995769.1296306-CDS-E-fasciculatus_F_contig148:18839..18900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 18840..18900 -
1622927962.7371473-CDS-E-fasciculatus_F_contig148:19215..193181622927962.7371473-CDS-E-fasciculatus_F_contig148:19215..19318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 19216..19318 -
1695995769.1392314-CDS-E-fasciculatus_F_contig148:19215..193181695995769.1392314-CDS-E-fasciculatus_F_contig148:19215..19318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 19216..19318 -
1622927962.7617955-CDS-E-fasciculatus_F_contig148:19909..200201622927962.7617955-CDS-E-fasciculatus_F_contig148:19909..20020Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 19910..20020 -
1695995769.1483595-CDS-E-fasciculatus_F_contig148:19909..200201695995769.1483595-CDS-E-fasciculatus_F_contig148:19909..20020Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 19910..20020 -
1622927962.7781186-CDS-E-fasciculatus_F_contig148:21402..214861622927962.7781186-CDS-E-fasciculatus_F_contig148:21402..21486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 21403..21486 -
1695995769.1574998-CDS-E-fasciculatus_F_contig148:21402..214861695995769.1574998-CDS-E-fasciculatus_F_contig148:21402..21486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig148 21403..21486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig148.3426.1prot_E-fasciculatus_F_contig148.3426.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig148 17365..21486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig148.3426.1

>prot_E-fasciculatus_F_contig148.3426.1 ID=prot_E-fasciculatus_F_contig148.3426.1|Name=mRNA_E-fasciculatus_F_contig148.3426.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=220bp
MRRLLHRKVDPEEQAKEWRRNINHEASWVRALERQIVSLERAEKKVQKDI
KTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIA
LIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVAD
GLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAPA
AAAEEEEKANAMKARLESL*
back to top

mRNA from alignment at E-fasciculatus_F_contig148:15193..21486-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig148.3426.1 ID=mRNA_E-fasciculatus_F_contig148.3426.1|Name=mRNA_E-fasciculatus_F_contig148.3426.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6294bp|location=Sequence derived from alignment at E-fasciculatus_F_contig148:15193..21486- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGCGACTGCTGCACCGGAAAGTCGACCCTGAAGAGCAGGCCAAGGA
ATGGAGGCGGAACATCAACCACGAGGCGAGTTGGGTCATGGTACTGGTGT
GGTTCTCAACACACATCATGTTCGTTCTGTGTCCGACCACGCAGTACGAA
TAGCGTTGAGGACAGAAAAGGCGGCGTAACTCTCGCGTTATGTAGTTGTG
CACGATGAACTACATGTATCTCTCGGAACGTTGCCATCGAAGGGCGGCAT
CATCGACGTGTTGTCTCTTGCAGCATATGTACATGATATGCATATCTCTG
CGGCTTGTCTATGCCCCTACCCGACTAAACAATATCGATTTTTTTCCATC
TCTCTCTCTCGGCCGTCACTGCGGCTGCTGTACTGCAGTAACTATTCTTT
TCGGCTCTTCCTTCCTGACTGACCCTTCCCAAGAGTCGGGTCCTGTACCA
CGTACATAAACCTGCTGCCTGCTGCACTGCTGGTACACAGCAACAGCAAC
AGGCAGTGCACGGTTCATGCCGGTCACGTATCCTACTGCTGTACACCTTC
CAACAAACCATGCGATTCGACCATTGGCAGATGCTACGTGTACACCGTTC
ACTGAGTGTCCTGCAGCTGGTGTGTCCTGTATTTTTTATGCTCTCTGGTG
TCGCCCTCCCAATCGGGTACAGTTGGACATTGGACATTGGACATCCGCAG
GGTTTGCTGGTACGTTGGCACATATTGGGGCATTGGGGGGCACGTTTACG
ACGACGACCCCACTTCTGTGCGTGTACATTATCCCGAAACACCCGATCTT
ATTGTTTTAGCTGATCTCTAGTTGATCGATGAACATTCCAATTGGAACAT
TCATGATTGCACACACGCTTTGCCGTTTTAAAACATGACCATGTCGATGT
ACACGTGGTTGTATTCAGCCATCAGTCACTCCTCCCGATAAGAATGCACC
ATATGGTGGGCATTCGTTGGACAAAACGCGCAGAATTGTAGTAAGAATTG
TAGGTCGCATTAGGAAGAGCTTACAATATCTTTTGCTTAGGGTTAGCGGC
GTCAAGAGCGAGTACGCATTATTACCTACGTTCTTTTCTGACAAGTGACA
GCAGCAGAGCTCAGCACAAATGGCGTAACTGCTGTCGCGACCAAATTGTC
TACCCGGTCTCGGAATACGATCGCCACACACACTATGAAGCTTACCCTAT
GCATATCTAGAACGTCACCAGTACACGCTGGTCTATGGCAACACTATCCA
CGCTGCACTGACCTCACATAAACCGGTGGCATGTGGGTTAGTGTCATGGA
ATAGAGTACACGGGACGCGAAAAGTGTTGAAGAATATTTGCTGTGTCAAC
CATGTTTATGGTTTGATTTCGTGGGCCGTTTTCTCTCCCCCCGCTCCGTG
GCAACTAACCGCTAGGGCATGGTAACATGAATACTCCCCGGCCGCGTTTG
CTGTGATGTGATGTAGGTGCGGGCGCTTGAGCGACAGATCGTTTCCCTGG
AGAGGGCCGAGAAGAAGGTGCAGAAGGACATCAAGACCATGGCCAAGGAA
GGCACCCGCAACGAAAAAGCCATTCGAGTGAGCATGACGATTTGATGGAA
CAGGACGTGCGAGTGCGAGGCGTTTTGTGTCTGGCGTCCTCTCGTGCTTG
CCTTTCGTCGTGCAGGAAGAGTTGCGAATATCTGTCTCGCGCTTTGCACC
GGTTTTCTCGCCATATGTAGTGTTGGAATTTTTAGCGGGGCGGACTTGTG
TACCCTGGCGCCCACAACATACATAGATGGGTCAAAACACAAAGCAGATA
GCGTTCCCGGCACCATGTCTCGCAACCTTGCCGAGTGACGAAATCCAGCG
TAGATGGGCAATTCAATAACCAAGAGCACGAAGGCACTTGAGTCTTTGGA
GCACAACGAAGGGCTTTTCGCCTGTGCCCAGGCTTGCAGGATTTGGAGAG
CGTTGTACTGGCAAGAAGGTTTGGAATATCATGATCTCTTTGAAGTTGCT
GTTGCTTTGTGACGTCGTTGTCTATCTGAGATGGCATGCCCTTTGGGCTA
TGATGACGGAAAAGGTATTTAGTGAACTGGTCATGTGTGTTGATCGGCTC
ATGATGAGTGTGTTCTGCTGTATCGTCCCTTCCTTTGGTTCTGTGGTGTA
TACGATTTGGTATTGCAGCTGCTTGCGAAGGAGTTGGTCATGTCGCGGAA
CGCCAAGAACCGCATGCACGAGGGAAAGGCACAGCTTCACTCCGTCCAGA
TGCAACTGCAAAACCAAATAGGTGAGAGCCGGGGCCGTGTCTGTTCGTGT
ATCCAGGGTAGTTTGGTCGCCGACATGACTTAAGGAGGGTATAGAGGTGC
TGCCACCGGTTCAGATGCAACCTCAGGGACACCACGCAACGCCTGAAGTT
CAATGCTTGGTTGGTACCACTGTACAGTAGTCTTGGTTCCCGCTCTTCAC
GTCGCCGCCTGGTACGTGCAAGCGGCTTCTTTGGTGCGGGGTTTGGCTTG
AATGGCTAGGCTCGCGCCTCAACCCAAGGATCTACTCTTCGCCTTGCTGT
TCTCATCGTATTTGCTTGTGTGCGCGTTTTATGCAGCTTTGATCAAGGTG
ACAGGCGTCATCAAGAAGAGCACGGAAATCATGGCTTCCATCGGAGAGTG
AGTGCAACCATTAATACAGTACCTAAACCAACCTGAGCTCGACGATGCCG
AACATGTTGTCCATTCGTGCACCATATGGTTTGTGTTTGTCGACGGCCTT
CAATCCGTCTACACCTTGTGAGCTTTGATAGTACCGTTGACAGACGATGT
ACCCATCGCTGTTGCAGACCTTGTCAAGTTAAGTTGGTTGGGTGTTGGTT
TTGTCCAAGTTTGGTCGATCGGTGGATACGCGACTTTGGTGTTGTGTTGC
GAAGCTCAGCTGCGTGAACGCTTCGAAGTGGGAAGACAGAATTTTGGCGC
ATCGCAAACTGGGTTGCTGGACACACCCCACAGCCAACAACATCTCCTAT
TCTACGTACACAACACGATGGTTTCTTGTGCTGTGCTGCCCATAACGCAC
AGCACAATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGG
GATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGAGCGTGCTGTG
GTGGTCTAGGTGATTATCATTATCCACAGCGTGACTGTAAAACCAACAAC
AACAAAACACGCCACTTCAAGTCCCTCCTGTTTTGCGCACCCGTGGGGCC
CTCGTGTCTTCTGTGCATTGACAGCGATCTGCAGGTGTTGTTGTGGGTTC
GGGTTACTATCCCTACGGTCCCTAGTTATTTCGTGCCGACGATGTTCTGA
CCCTGTTCTTATGTGCGCTCTTACCGTCTTGCTTTTTTTTTTCTTCTGCG
TTTTCTTCTTTTTTTTCTTTCAGTTTGGTGAAGATTCCTGAGCTACAGGA
GAACATGTTCCAGCTGGCAACGGAGATGGAGCGTGCGGGGTTGGTGGAGG
AGGTTGTCGCCGATGGACTTGCCCTTACAGACGTGAGGTCGCCTACTATA
TTGCTTTTGTGTGTCGTTAGTTTTGTCTTGTACTTGAGTATTACTTCTGA
ACGGAGACTAAATAGAACGGTTTTTGATGTGGGGATAACAACAAGTCTGA
TGTAGTCTTTTCCATAGGCTTGGCAAATGCCACATCTCCTGAGGGTGCTC
TACTTGTCGTCCCTGTTGAGCTGCTCGTCGCTTGTTTTTTCGTGTGTCCA
TGTTGACGCAGAGAAAAGTTGTATGTCTTCGACTCTCGAGAATGAAAAAC
ATTCACGAGCACGGACACATGGATGGGGCTTCGTCGAAATAGCGGCGCAA
ATTTCGAGGACAATACAGTCTGTGTCAATAACACATTGTCCGGGTTGTGC
CGCATTTCGGATTTGTTTTTCGGCAAACAGGCGGAGGGACTCGATGCCCA
GGCAGACGCGGAGGTGGACAAGGTTATCGCCGAGATTACCGAGGGGGTGC
TCGAAGGGGCGGTGGATGCGCCGACGGCGGTTCCCGAACCGGCAGCGGTT
GCGGCGCCTGCTGCTGCCGCTGAAGAGGAGGAGAAGGCGAACGCCATGAA
GGCTCGATTGGAGTCTCTGTGAAGCGGGAGCCGCAATGATGATGCTCTCT
TTGTGTGAATGTTCGGTCGGGGTGCGGTTTGGGACCTGTTCAAACGGTAC
CATATTTGTCGCGTACTAGTTTCACACTCAGGTTTATGGTCGCAATCGAA
ATTGGGGTGCGCACAATGTAAAAAAAAATCCCAAGAGGCTGAGTGGGACT
CTCTGTCTTCCGAATAAGAGAGGGGGGGCGTGGCGTGTAGAGAGGTGGGA
AGGCCACTTTGATGTTGCGTTGAACGTGCGAAACGCAGAACACTTGTAAC
GCTTCTGGTGCTCTGTTTTTTCCATGCGGTTGCAGTTTGTAGTCGAAGCG
GTAGTAGTCACGCCGCTCGCTACTGCTGCTGCCGTTACTGCGGTGGCCGT
TACAGCGAAAAGAGGTTGGTGTGGTGTCGGTTGTCCAAGCGTGTTTTAGG
GGGACGTCGTTGTGTGTGCACGTGCTAACACAGGCCAGCGTTTTGTCGAG
AAGGCACACCGGCTGCATACAATGCTGCAGCTATTGTAACCGTTGAGTGT
TCTTGCTCGGTCGGCGTTTAAGTAAGAAGACTTGTTGTGTTGTGACCTCA
AGGCAAGACGTACGTCCATACGGCAGAGGACGCGACCGGAGAGAACCCTC
AAGCTCGAAAGATGTGGTTGTTTGCACGTCGCCTGTGTTTGCCGAACTAG
CTTGTTCGGCCGTCCCTTTAGTCTTCCGGACCTACCTCCCGGGACCGCGG
TCGGTTTTCGACGATGTGGACGTGATGATAAACGACATGTCCGCGGCTGA
ATAAATCCTATGGCCGTGTACCAAGTACGAACCCCCTAATTTTCGACTGC
GGGGTGCGTGTAGGTCTCGAGTTTGGACTAGACAGTGGGACGGTGGAGGC
CTTCCCGCTATTTGTTCTAGGCGATGGAGAAGGTTGACTGCACTTGTCGC
GTAGATGAGTACGGTAATACCGGGGTTGGCTAGCGTTTACGGTACACTCT
ATCGGCCTAGAGAGCTGAGCCCCTGTACTATTGGCCTAGAGCTGAGCCGT
GCTTGCTGCAGATAGCATAGCAACAGCACGAGCGTGATAAGCTCATATAG
TTGCCTACGATATGTTGTACGTGCTGCCTCGCCTTCAGCCTTACACCATC
GTGTACACAACACACGGCATGCTTGTGCTTTCAAAACAAAGTCTTGCTAT
TTCACACGCGTGGACACCAATCCCCTCACAGACAGTGCAGAACGCTAGTA
GCACATGGCGCATGGCTGACGCACGGTTTGGTATGTTTTGTAGTTCATGT
TGTATGTACGTTCATTAAGGCTTGCGTTGTGGCAGTTTTTCGCTCTTTGC
GGGGGGGCTCGGTTTTCTTTGTTTTGTTCCGCCCTTTTTTTCGAGGAAGA
ATTTGTTGTTGGTCGCGTCTGCCGTGGAAGGAAGAGCTGCTTGATTGTCG
TTGGTGTTTCGGAAGCTGGTGGGACGGAACCGCTCCCGTTGCCTGTTTTG
TTCTACGCCGTCGTTCGCTTGAAATGAGAGTGCGATCAATTGTGACCACG
CACGTACGGAAGGAAATGAACGGGTTTGTCGCGTCTCGTGCTCGTTGTGT
GTGGCACCGGTCCAACTAAGATGACTCGGGGGCAACGGCTGGGCTGTCCT
TCCATCGCCGGTGCTACAGATTCCCGTGTTCTCTTGAATCATCTCGTGCG
CCGCACGACCTCGTAGGATGGCAGACGGATACTCTACCGAGACAGGTGAT
CACTGATGGAGCCAAACGTTAACATGCAGAAGGCACTAATCAAGCTCCAA
AGTTTCTGAGGGCGTCTACAGTATTGTAGTGCACGACGGCCGATGAAGTG
ATTTCTCGCGCGTCGGGGGTTCGGCACCAAAACGCGGGTGGTTCGGGTCT
TCCGACTGAGAGTGATCAGGACGGACGGAGACGTGTACGGTGCGGTGATA
CCTCAGAGGCTGAAACGGTCTCATAAAGGAACTACCGTAGTGGTCTCCAT
GGCGGTGTACTCCGATCAGCCCCATGTTTACATGTTCTGTTGCGTTTCTC
GTGCCAATGAAAGTTTCCGTCCTTGTCATTATTCTTAACGTTAGTCGTGT
GTACCCCCATCGCAGTAGTCAAGATGTTCCCATCGCGTGTAGGAGGAGAG
AGCGCTATCATCCTGACACGCACAAGGTTTTCTTGGAATGAACG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig148:15193..21486-

>mRNA_E-fasciculatus_F_contig148.3426.1 ID=mRNA_E-fasciculatus_F_contig148.3426.1|Name=mRNA_E-fasciculatus_F_contig148.3426.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-fasciculatus_F_contig148:15193..21486- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGCGACTGCTGCACCGGAAAGTCGACCCTGAAGAGCAGGCCAAGGA
ATGGAGGCGGAACATCAACCACGAGGCGAGTTGGATGCGGCGACTGCTGC
ACCGGAAAGTCGACCCTGAAGAGCAGGCCAAGGAATGGAGGCGGAACATC
AACCACGAGGCGAGTTGGGTGCGGGCGCTTGAGCGACAGATCGTTTCCCT
GGAGAGGGCCGAGAAGAAGGTGCAGAAGGACATCAAGACCATGGCCAAGG
AAGGCACCCGCAACGAAAAAGCCATTCGAGTGCGGGCGCTTGAGCGACAG
ATCGTTTCCCTGGAGAGGGCCGAGAAGAAGGTGCAGAAGGACATCAAGAC
CATGGCCAAGGAAGGCACCCGCAACGAAAAAGCCATTCGACTGCTTGCGA
AGGAGTTGGTCATGTCGCGGAACGCCAAGAACCGCATGCACGAGGGAAAG
GCACAGCTTCACTCCGTCCAGATGCAACTGCAAAACCAAATAGCTGCTTG
CGAAGGAGTTGGTCATGTCGCGGAACGCCAAGAACCGCATGCACGAGGGA
AAGGCACAGCTTCACTCCGTCCAGATGCAACTGCAAAACCAAATAGCTTT
GATCAAGGTGACAGGCGTCATCAAGAAGAGCACGGAAATCATGGCTTCCA
TCGGAGACTTTGATCAAGGTGACAGGCGTCATCAAGAAGAGCACGGAAAT
CATGGCTTCCATCGGAGATTTGGTGAAGATTCCTGAGCTACAGGAGAACA
TGTTCCAGCTGGCAACGGAGATGGAGCGTGCGGGGTTGGTGGAGGAGGTT
GTCGCCGATGGACTTGCCCTTACAGACTTTGGTGAAGATTCCTGAGCTAC
AGGAGAACATGTTCCAGCTGGCAACGGAGATGGAGCGTGCGGGGTTGGTG
GAGGAGGTTGTCGCCGATGGACTTGCCCTTACAGACGCGGAGGGACTCGA
TGCCCAGGCAGACGCGGAGGTGGACAAGGTTATCGCCGAGATTACCGAGG
GGGTGCTCGAAGGGGCGGTGGATGCGCCGACGGCGGTTCCCGAACCGGCA
GCGGTTGCGGCGCCTGCTGCTGCCGCTGAAGAGGAGGAGAAGGCGAACGC
CATGAAGGCTCGATTGGAGTCTCTGTGAGCGGAGGGACTCGATGCCCAGG
CAGACGCGGAGGTGGACAAGGTTATCGCCGAGATTACCGAGGGGGTGCTC
GAAGGGGCGGTGGATGCGCCGACGGCGGTTCCCGAACCGGCAGCGGTTGC
GGCGCCTGCTGCTGCCGCTGAAGAGGAGGAGAAGGCGAACGCCATGAAGG
CTCGATTGGAGTCTCTGTGA
back to top