mRNA_E-fasciculatus_F_contig14797.3423.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14797.3423.1
Unique NamemRNA_E-fasciculatus_F_contig14797.3423.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14797.3423.1 vs. uniprot
Match: D8LL66_ECTSI (FYVE, RhoGEF and PH domain containing 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL66_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.580e-35
Identity = 71/104 (68.27%), Postives = 75/104 (72.12%), Query Frame = 2 
Query:  317 WARRGRCPNRRRLXXXXXXXXXXXRWTREMAPQSAWPVCPGRAALAGKGTSASIRTSCSGCRXXXXXXXTSS*RCTTGQAGYQPGLTPYSGTVGYLCTGFHARG 628
            WARRGRCPNRRRL             +REMAP+SAWPV P RAALAGKGTSASIRTSCSGCR        S  RCTTG+AGYQP  TP+SGTVGY  TGFHARG
Sbjct:  158 WARRGRCPNRRRLPLRQPLRPGRHPSSREMAPRSAWPVSPARAALAGKGTSASIRTSCSGCRALAAPGTISFWRCTTGRAGYQPWQTPFSGTVGYRSTGFHARG 261
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14797.3423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL66_ECTSI1.580e-3568.27FYVE, RhoGEF and PH domain containing 6 n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14797contigE-fasciculatus_F_contig14797:286..2686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-24_002760.1
Exons4
Model size630
Cds size630
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14797.3423.1prot_E-fasciculatus_F_contig14797.3423.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14797 286..2686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927962.1314664-CDS-E-fasciculatus_F_contig14797:285..5001622927962.1314664-CDS-E-fasciculatus_F_contig14797:285..500Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14797 286..500 +
1695995768.8119426-CDS-E-fasciculatus_F_contig14797:285..5001695995768.8119426-CDS-E-fasciculatus_F_contig14797:285..500Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14797 286..500 +
1622927962.1485407-CDS-E-fasciculatus_F_contig14797:926..10261622927962.1485407-CDS-E-fasciculatus_F_contig14797:926..1026Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14797 927..1026 +
1695995768.8237667-CDS-E-fasciculatus_F_contig14797:926..10261695995768.8237667-CDS-E-fasciculatus_F_contig14797:926..1026Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14797 927..1026 +
1622927962.1648374-CDS-E-fasciculatus_F_contig14797:2068..22901622927962.1648374-CDS-E-fasciculatus_F_contig14797:2068..2290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14797 2069..2290 +
1695995768.8372898-CDS-E-fasciculatus_F_contig14797:2068..22901695995768.8372898-CDS-E-fasciculatus_F_contig14797:2068..2290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14797 2069..2290 +
1622927962.1793575-CDS-E-fasciculatus_F_contig14797:2593..26861622927962.1793575-CDS-E-fasciculatus_F_contig14797:2593..2686Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14797 2594..2686 +
1695995768.8507335-CDS-E-fasciculatus_F_contig14797:2593..26861695995768.8507335-CDS-E-fasciculatus_F_contig14797:2593..2686Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14797 2594..2686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14797.3423.1

>prot_E-fasciculatus_F_contig14797.3423.1 ID=prot_E-fasciculatus_F_contig14797.3423.1|Name=mRNA_E-fasciculatus_F_contig14797.3423.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=210bp
KVIVHETLGRAQASRGDAPPSVPVGPSSPRPGSAAVAAAPTAGFGVGFGG
RGTWGEGDDAAAGGGGGGGGAAPTPSAEAAPRLLGSDVLNRARAPYCRLT
VASKQVGKTRPVPQSPPPAAASASALPPSPLDTGDGAAIGVAGVSGSSSV
GGQGHQCFDQNFLFRVSCACRTGDYVVLEVYDRAGGLSAGADPLLGHCRI
PLYRIPRKR*
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mRNA from alignment at E-fasciculatus_F_contig14797:286..2686+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14797.3423.1 ID=mRNA_E-fasciculatus_F_contig14797.3423.1|Name=mRNA_E-fasciculatus_F_contig14797.3423.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2401bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14797:286..2686+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTGATCGTGCACGAGACCTTGGGCAGAGCCCAGGCCTCCCGCGGGGA
CGCCCCGCCCTCGGTGCCGGTTGGGCCGTCGTCTCCCCGGCCGGGGTCAG
CGGCGGTGGCGGCGGCGCCGACGGCGGGTTTCGGTGTCGGTTTCGGAGGA
AGAGGGACGTGGGGGGAAGGGGATGATGCTGCTGCTGGCGGCGGCGGTGG
TGGTGGTGGAGCCGCGTGAGTGTGGGATGGGTGCAGGCTGTTGAGGGCGT
TGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCCGTGTTGTTGTTA
CGATTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGGTAGTGCCGTC
ACGCCTCCTCTGGTGTAAAGCCGATCAACGGAACACGATATCCATTGCCG
AAACGCTCACAAGCCGGCGCCAAAGCGGGTACAAGCGGGTACACTCTACA
ACACCTTTCAGCTTCCGGAATACGAGGAGTTGCCACGAGAAGCTCAGCGA
TGTACGTACATGCTCTTGTGCGGTTGAGTCGTCAGCCGCGTTATTATAGT
GATACAAGACACCATTTTTGGCAATTTGCATATTCTGTACCCCCCCCCCC
CCCCCCCCCCCACCCCGCCAACAAAATACGGTCTGCGACAGCCCCACTCC
CAGCGCGGAGGCAGCTCCCAGGCTGCTCGGCTCAGACGTGTTAAACCGCG
CAAGAGCTCCGTACTGCAGGCTGACGGTGGCGAGCAAGCAGGTGAAGGGA
AGGGAGCAAACAATTCGGCAAGCGGGTACAAGCATGTAGTCACCTAGGCA
GGTGAAGAAGCGCGAACAATTTTGCAGGCGGGGGTTATAGTCGCTTGCCA
ATGGCTATAATTTTTGCCCACAGATCATTATACTCGCAGAATGTCCTTCC
AAAAGCTACAGGAGAACGGAAGCACGTTGGGTTTTCGTCGACCAGTGGGA
GGGGTAACGTGGGGGTGGCCTGCCGGTCGAACAACGTCGAACCCACCGTT
CTTGTCTTGGCAGAATTACCCCCTAGCCATAAGTGCCGGGGGTAGCCATG
GTGGCGACCTCTGTGGTTTCTCTCGTCACCCACCGGGGTTGGGGTGGGTG
ATACACACGGGGCGTGTAGGGGGAAGGGGGTCGTCGTGTTTCTGGTGTTT
CGCCTCTCCCCGCGGCACTCGAGACCCCCCTTTCTCCTCGTTCTCGGCGA
ATGGTGCGTACATAGAAAACAGCACACGGTGCCCCCTTCGCAGACGCAGT
GCTCGCCTTTGTGGCCTTATCCGCCGAGCTCTCAACGCTCCCAGCTTCAC
CACTGTTGTACGCTCCTTTTGCAACGCGCACAATCGGCATCTCGGGGTTG
TTACATGTCGAGGTCGGCCACTCGTGGTAGGCGGCAAGACCCGAGCGCAT
CCCGAAATCCAGCTTGAGCTTTGATGTCCTTTTTACGACGTATATACGTT
CGTGAGGTGGGCAAGGCACGGCCGGCTTGAGCTTTTGACGTAATTTTCAT
GTTTCATGTTCTTGAAAGTGGTATGTACATGCGTACGTTCGTTAGGTGCG
CAAGCCACGGCCGGCTTGAGCTTTGACACCGTCATTATGTTTTTGTGTTT
TCTACCGTACACGTATATACGTTCGTTAGGTCGGCAAGACGCGAGCTTTG
ACACACACCATCACGTTCTCTACTTCCTCCGTCCATGCACACACGCTTGT
TGTTAGGTGGGCAACGACGCGGCCGCCTTGAGCTCTAACACCATCATGTC
TTCTACTTCCGTATGCACGCGTTTGTTTGTTAGGTGGGCAAGACGCGGCC
GGTGCCCCAATCGCCGCCGCCTGCCGCCGCCTCCGCCTCCGCTCTTCCGC
CGTCGCCGTTGGACACGGGAGATGGCGCCGCAATCGGCGTGGCCGGTGTG
TCCGGGTCGAGCAGCGTTGGCGGGCAAGGGCACCAGTGCTTCGATCAGAA
CTTCCTGTTCAGGGTGTCGTGCGCTTGCCGCACCGGGGACTACGTCGTCC
TAGAGGTAAGACCAAGAAGCAGCAGAAACGGCGCGCTTATTAGTGTGTGC
CAATCATTTTTGAACCGAACGCTACATTTTTCCATGCGTATGCTCAGCAG
CAGCAACAGAGTAGCAGACGAAACGGCACGTGTTTGTCGAAAAGTGTATT
ATTCCTATTCTTGACCGACCGGTACACTATATGCATGCGTATGCACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGAATC
AGCATGCACTTCGTGGTCGCAGTAGCTAACTTAACCTCCCCCCCTCTCTC
CTCGGCAGGTGTACGACAGGGCAGGCGGGCTATCAGCCGGGGCTGACCCC
CTACTCGGGCACTGTCGGATACCTCTGTACCGGATTCCACGCAAGAGGTG
A
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14797:286..2686+

>mRNA_E-fasciculatus_F_contig14797.3423.1 ID=mRNA_E-fasciculatus_F_contig14797.3423.1|Name=mRNA_E-fasciculatus_F_contig14797.3423.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1260bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14797:286..2686+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTGATCGTGCACGAGACCTTGGGCAGAGCCCAGGCCTCCCGCGGGGA
CGCCCCGCCCTCGGTGCCGGTTGGGCCGTCGTCTCCCCGGCCGGGGTCAG
CGGCGGTGGCGGCGGCGCCGACGGCGGGTTTCGGTGTCGGTTTCGGAGGA
AGAGGGACGTGGGGGGAAGGGGATGATGCTGCTGCTGGCGGCGGCGGTGG
TGGTGGTGGAGCCGCAAGGTGATCGTGCACGAGACCTTGGGCAGAGCCCA
GGCCTCCCGCGGGGACGCCCCGCCCTCGGTGCCGGTTGGGCCGTCGTCTC
CCCGGCCGGGGTCAGCGGCGGTGGCGGCGGCGCCGACGGCGGGTTTCGGT
GTCGGTTTCGGAGGAAGAGGGACGTGGGGGGAAGGGGATGATGCTGCTGC
TGGCGGCGGCGGTGGTGGTGGTGGAGCCGCCCCCACTCCCAGCGCGGAGG
CAGCTCCCAGGCTGCTCGGCTCAGACGTGTTAAACCGCGCAAGAGCTCCG
TACTGCAGGCTGACGGTGGCGAGCAAGCAGCCCCACTCCCAGCGCGGAGG
CAGCTCCCAGGCTGCTCGGCTCAGACGTGTTAAACCGCGCAAGAGCTCCG
TACTGCAGGCTGACGGTGGCGAGCAAGCAGGTGGGCAAGACGCGGCCGGT
GCCCCAATCGCCGCCGCCTGCCGCCGCCTCCGCCTCCGCTCTTCCGCCGT
CGCCGTTGGACACGGGAGATGGCGCCGCAATCGGCGTGGCCGGTGTGTCC
GGGTCGAGCAGCGTTGGCGGGCAAGGGCACCAGTGCTTCGATCAGAACTT
CCTGTTCAGGGTGTCGTGCGCTTGCCGCACCGGGGACTACGTCGTCCTAG
AGGTGGGCAAGACGCGGCCGGTGCCCCAATCGCCGCCGCCTGCCGCCGCC
TCCGCCTCCGCTCTTCCGCCGTCGCCGTTGGACACGGGAGATGGCGCCGC
AATCGGCGTGGCCGGTGTGTCCGGGTCGAGCAGCGTTGGCGGGCAAGGGC
ACCAGTGCTTCGATCAGAACTTCCTGTTCAGGGTGTCGTGCGCTTGCCGC
ACCGGGGACTACGTCGTCCTAGAGGTGTACGACAGGGCAGGCGGGCTATC
AGCCGGGGCTGACCCCCTACTCGGGCACTGTCGGATACCTCTGTACCGGA
TTCCACGCAAGAGGTGAGTGTACGACAGGGCAGGCGGGCTATCAGCCGGG
GCTGACCCCCTACTCGGGCACTGTCGGATACCTCTGTACCGGATTCCACG
CAAGAGGTGA
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